Guide to the Human Genome
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Name: TMEM25 Sequence: fasta or formatted (366aa) NCBI GI: 31377650
Description:

transmembrane protein 25 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {322aa} transmembrane protein 25 isoform 2
alt prot {218aa} transmembrane protein 25 isoform 3
alt prot {351aa} transmembrane protein 25 isoform 4
alt prot {306aa} transmembrane protein 25 isoform 5
alt prot {322aa} transmembrane protein 25 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         34           2
 C cysteine            1.1          4           1
 D aspartate           3.8         14           1
 E glutamate           4.4         16           1
 F phenylalanine       2.2          8           1
 G glycine             7.7         28           2
 H histidine           1.9          7           1
 I isoleucine          2.5          9           1
 K lysine              2.2          8           2
 L leucine            14.8         54           4
 M methionine          0.8          3           1
 N asparagine          5.5         20           2
 P proline             7.4         27           2
 Q glutamine           4.9         18           1
 R arginine            6.0         22           1
 S serine              8.5         31           2
 T threonine           6.0         22           1
 V valine              8.2         30           2
 W tryptophan          1.6          6           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 25 isoform 1 
TMEM25                0.936   transmembrane protein 25 isoform 4 
TMEM25                0.853   transmembrane protein 25 isoform 2 
TMEM25                0.853   transmembrane protein 25 isoform 2 
TMEM25                0.780   transmembrane protein 25 isoform 5 
TMEM25                0.486   transmembrane protein 25 isoform 3 
HMCN1                 0.031   hemicentin 1 
TTN                   0.024   titin isoform N2-A 
AGER                  0.023   advanced glycosylation end product-specific receptor...
SIGLEC1               0.023   sialoadhesin precursor 
LRIG1                 0.021   leucine-rich repeats and immunoglobulin-like domains...
NPHS1                 0.021   nephrin precursor 
KIRREL2               0.021   kin of IRRE-like 2 isoform c 
KIRREL2               0.021   kin of IRRE-like 2 isoform b 
KIRREL2               0.021   kin of IRRE-like 2 isoform a 
KIRREL                0.020   kin of IRRE like 
LOC147645             0.017   PREDICTED: hypothetical protein 
LOC147645             0.017   PREDICTED: hypothetical protein 
LOC147645             0.017   PREDICTED: hypothetical protein 
IGSF9B                0.017   immunoglobulin superfamily, member 9B 
HMCN2                 0.017   PREDICTED: hemicentin 2 
HMCN2                 0.017   PREDICTED: hemicentin 2 
HMCN2                 0.017   PREDICTED: hemicentin 2 
CEACAM5               0.014   carcinoembryonic antigen-related cell adhesion molec...
NTRK3                 0.014   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.014   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.014   neurotrophic tyrosine kinase, receptor, type 3 isofo...
CEACAM1               0.014   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.014   carcinoembryonic antigen-related cell adhesion molec...
FAM13C                0.013   hypothetical protein LOC220965 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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