Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AGER Sequence: fasta or formatted (404aa) NCBI GI: 10835203
Description:

advanced glycosylation end product-specific receptor isoform 1 precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [342aa] advanced glycosylation end product-specific receptor isoform 2 pr...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         31           2
 C cysteine            1.5          6           1
 D aspartate           1.7          7           1
 E glutamate           8.9         36           5
 F phenylalanine       1.2          5           1
 G glycine            12.1         49           3
 H histidine           1.5          6           1
 I isoleucine          4.0         16           2
 K lysine              3.7         15           2
 L leucine             9.2         37           2
 M methionine          1.0          4           1
 N asparagine          2.5         10           1
 P proline            10.4         42           2
 Q glutamine           4.7         19           1
 R arginine            5.7         23           2
 S serine              6.9         28           2
 T threonine           5.7         23           1
 V valine              8.4         34           2
 W tryptophan          2.2          9           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   advanced glycosylation end product-specific receptor... 
AGER                  0.630   advanced glycosylation end product-specific receptor...
ALCAM                 0.071   activated leukocyte cell adhesion molecule 
HMCN2                 0.066   PREDICTED: hemicentin 2 
HMCN2                 0.066   PREDICTED: hemicentin 2 
HMCN2                 0.066   PREDICTED: hemicentin 2 
ROBO3                 0.061   roundabout, axon guidance receptor, homolog 3 
PXDN                  0.060   peroxidasin 
ROBO1                 0.059   roundabout 1 isoform d 
ROBO1                 0.059   roundabout 1 isoform c 
LOC642132             0.059   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.059   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.056   roundabout 1 isoform b 
MCAM                  0.056   melanoma cell adhesion molecule 
ROBO1                 0.056   roundabout 1 isoform a 
LOC147645             0.055   PREDICTED: hypothetical protein 
LOC147645             0.055   PREDICTED: hypothetical protein 
LOC147645             0.055   PREDICTED: hypothetical protein 
LOC100292387          0.052   PREDICTED: similar to hemicentin 2 
LOC100289200          0.052   PREDICTED: hypothetical protein XP_002342997 
HMCN1                 0.050   hemicentin 1 
PTK7                  0.050   PTK7 protein tyrosine kinase 7 isoform c precursor [...
IGDCC3                0.050   putative neuronal cell adhesion molecule 
HSPG2                 0.049   heparan sulfate proteoglycan 2 
ROBO4                 0.046   roundabout homolog 4, magic roundabout 
ROBO2                 0.045   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.045   roundabout, axon guidance receptor, homolog 2 isofor...
BOC                   0.045   brother of CDO 
MDGA1                 0.044   MAM domain containing glycosylphosphatidylinositol a...
CADM4                 0.044   cell adhesion molecule 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press