Guide to the Human Genome
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Search of human proteins with 31077200

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12)
isoform b [Homo sapiens]
         (251 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...   524   e-149
gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...   524   e-149
gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isof...   513   e-146
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...   151   5e-37
gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]             75   4e-14
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     66   3e-11
gi|9558733 transformer-2 alpha [Homo sapiens]                          62   6e-10
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa...    60   2e-09
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    59   5e-09
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    54   1e-07
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               54   1e-07
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               54   1e-07
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               54   1e-07
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        54   1e-07
gi|55956788 nucleolin [Homo sapiens]                                   54   2e-07
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo...    53   3e-07
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor...    53   3e-07
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]      53   3e-07
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               52   4e-07
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               52   4e-07
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    52   6e-07
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    52   6e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    51   8e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    51   8e-07
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     51   8e-07
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         51   8e-07
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         51   1e-06
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       50   1e-06
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      50   1e-06
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  50   2e-06

>gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           b [Homo sapiens]
          Length = 251

 Score =  524 bits (1349), Expect = e-149
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
           MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
Sbjct: 1   MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60

Query: 61  ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
           ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
Sbjct: 61  ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120

Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
           VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180

Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
           YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240

Query: 241 IKGREKKERGK 251
           IKGREKKERGK
Sbjct: 241 IKGREKKERGK 251


>gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           b [Homo sapiens]
          Length = 251

 Score =  524 bits (1349), Expect = e-149
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
           MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
Sbjct: 1   MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60

Query: 61  ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
           ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
Sbjct: 61  ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120

Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
           VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180

Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
           YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240

Query: 241 IKGREKKERGK 251
           IKGREKKERGK
Sbjct: 241 IKGREKKERGK 251


>gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
           a [Homo sapiens]
          Length = 246

 Score =  513 bits (1322), Expect = e-146
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 6   MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 65
           MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL
Sbjct: 1   MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 60

Query: 66  QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 125
           QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH
Sbjct: 61  QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 120

Query: 126 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 185
           EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK
Sbjct: 121 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 180

Query: 186 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 245
           RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE
Sbjct: 181 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 240

Query: 246 KKERGK 251
           KKERGK
Sbjct: 241 KKERGK 246


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score =  151 bits (382), Expect = 5e-37
 Identities = 90/206 (43%), Positives = 120/206 (58%), Gaps = 9/206 (4%)

Query: 52  GDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVI 111
           GD   TLFVAR+N  T E KL+  F  YG I+R+ +V    +G  +GYAFIEY+ ER + 
Sbjct: 99  GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158

Query: 112 KAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESG---QLRFGGRDRPFR 168
            AY+ ADG  ID   + VD E  RT+KGW PRRLGGGLGG +  G    +R  GRD   R
Sbjct: 159 SAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR 218

Query: 169 ---KPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVW 225
              +P   P+   D  R+ +RERRERSR R++  + R R R  DR R  R +++E  R  
Sbjct: 219 YDERPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERRRS 277

Query: 226 PD--NDWERERDFRDDRIKGREKKER 249
            +   D +R+R  R  R + R ++ER
Sbjct: 278 RERSKDKDRDRKRRSSRSRERARRER 303



 Score = 32.7 bits (73), Expect = 0.31
 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 182 REGKRERRERSRS-RERHWDSRTRDRDHDRGREKRWQEREPTR 223
           R+  RERR   RS RER    R RDRD DR RE +  ER   R
Sbjct: 348 RDRDRERRRSHRSERERR---RDRDRDRDRDREHKRGERGSER 387



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 156 GQLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREK 214
           G+L   G D P  K  +    +   +R  +  RR+R R R+R  + +  +R  +RGR++
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDE 391



 Score = 31.6 bits (70), Expect = 0.68
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
           R   R  RER R R+R    R RDR+H RG     + R+  R
Sbjct: 355 RRSHRSERERRRDRDR---DRDRDREHKRGERGSERGRDEAR 393



 Score = 30.4 bits (67), Expect = 1.5
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 200 DSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREKKERGK 251
           + + RDRD +R R  R  ERE  R   D D +R+RD    R  G    ERG+
Sbjct: 344 EEKGRDRDRERRRSHR-SERERRR---DRDRDRDRDREHKR--GERGSERGR 389


>gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]
          Length = 492

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%)

Query: 14  KEYDPLKAGSIDGTDEDPHDR-AVWRAMLARYVPN--KGVIGDPLLTLFVARLNLQTKED 70
           +E D  K  S +  +E   ++ A  +A+L   V +     I  P   LFV +LN  T ++
Sbjct: 195 EEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDE 254

Query: 71  KLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVD 130
            L+ +FSR+G IR   ++RD  TG S  YAFIE+++E    KA+   D ++ID   I VD
Sbjct: 255 DLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVD 314

Query: 131 YELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPV---------VKNDLY 181
           +        W       G GGK       F   ++   KP NL +          K DL 
Sbjct: 315 FSQSVAKVKW------KGKGGKYTKSD--FKEYEKEQDKPPNLVLKDKVKPKQDTKYDLI 366

Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR---------------VWP 226
            +   E+ E S+S   H   + + + H    EK  ++  P +                  
Sbjct: 367 LD---EQAEDSKSSHSHTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMGFGHYEEE 423

Query: 227 DNDWERERDFRDDRIKGREK 246
           ++ WE+++  + DR + R +
Sbjct: 424 ESCWEKQKSEKRDRTQNRSR 443


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 28/176 (15%)

Query: 55  LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
           + +L V  L  +T  D L+ VF +YG +  + + RD  T  S+G+AF+ + ++R    A 
Sbjct: 13  MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72

Query: 115 RDADGLVIDQHEIFVDY-------ELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167
              DG V+D  E+ V         +   + +G  PRR GGG           +G R R  
Sbjct: 73  DAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGG----------GYGRRSRSP 122

Query: 168 RKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
           R+            R  +   R RSRSR R   SR++ R   R R +   +    R
Sbjct: 123 RR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSAR 167


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 19/167 (11%)

Query: 53  DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
           DP   L V  L+L T E  L+EVFSRYG +  + +V D  TG S+G+AF+ ++      +
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175

Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRL------------GGGLGGKKESGQLRF 160
           A   A+G+ +D   I VDY + +      P               GGG GG    G+ R 
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235

Query: 161 GGRDRPFRKPINLPVVKNDLYREGKRE-----RRERSRSRERHWDSR 202
              DR + +  +    ++  YR  +R       R RSRSR R +  R
Sbjct: 236 SYYDRGYDRGYDR--YEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPR 280


>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
           sapiens]
          Length = 1067

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LF+  LNL+T E  LK  F +YG I ++ L++D  T  S+G+AF+ ++       A RD 
Sbjct: 10  LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69

Query: 118 DGLVIDQHEIFVDYELERTLKG--WIPRRLGGGLGGKKESGQLRFGGRDRPFRKP 170
           +G  +D   I V   ++   K   W+P   G   G +        GG   P R P
Sbjct: 70  NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGS--GSRSRFSHRTRGGGSSPQRPP 122


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 23/197 (11%)

Query: 53  DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
           D ++TL V  L  +T  D L+ VF +YG +  + + R+  T   +G+AF+ + + R    
Sbjct: 11  DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70

Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPIN 172
           A    DG  +D  E+ V  ++ R  +  +PR   G   G+   G   +G R R + +   
Sbjct: 71  AEAAMDGAELDGRELRV--QVARYGRRDLPRSRQGEPRGRSRGG--GYGRRSRSYGR--- 123

Query: 173 LPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWER 232
                    R     RR RSRSR     S +R R   R R  R+     +R    + + R
Sbjct: 124 ---------RSRSPRRRHRSRSR---GPSCSRSRSRSRYRGSRYSRSPYSR----SPYSR 167

Query: 233 ERDFRDDRIKGREKKER 249
            R  R    + R ++ R
Sbjct: 168 SRYSRSPYSRSRYRESR 184


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 55  LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
           L ++FV  +  +  E++LK++FS  G +   RLV D  TG  KGY F EY+++   + A 
Sbjct: 15  LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74

Query: 115 RDADGLVIDQHEIFVD 130
           R+ +G       + VD
Sbjct: 75  RNLNGREFSGRALRVD 90


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 54  PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
           P  TLF+  LN  T E+KLKEVFS+ G ++   + +         S G+ F+EY++    
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787

Query: 111 IKAYRDADGLVIDQHEIFV 129
            KA +   G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LFV  L   + E+ L+++FS+YG +  L    D +T   KG+AFI +      +KAY + 
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 118 DGLVIDQHEIFV 129
           DG V     + V
Sbjct: 464 DGQVFQGRMLHV 475



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
           + V  +  Q    +++E+FS +G+++ +RL + +  TG  +G+ F+++  ++   +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 54  PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
           P  TLF+  LN  T E+KLKEVFS+ G ++   + +         S G+ F+EY++    
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787

Query: 111 IKAYRDADGLVIDQHEIFV 129
            KA +   G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LFV  L   + E+ L+++FS+YG +  L    D +T   KG+AFI +      +KAY + 
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 118 DGLVIDQHEIFV 129
           DG V     + V
Sbjct: 464 DGQVFQGRMLHV 475



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
           + V  +  Q    +++E+FS +G+++ +RL + +  TG  +G+ F+++  ++   +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 54  PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
           P  TLF+  LN  T E+KLKEVFS+ G ++   + +         S G+ F+EY++    
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787

Query: 111 IKAYRDADGLVIDQHEIFV 129
            KA +   G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LFV  L   + E+ L+++FS+YG +  L    D +T   KG+AFI +      +KAY + 
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 118 DGLVIDQHEIFV 129
           DG V     + V
Sbjct: 464 DGQVFQGRMLHV 475



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
           + V  +  Q    +++E+FS +G+++ +RL + +  TG  +G+ F+++  ++   +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 55  LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
           L ++FV  +  +  E++LK++FS  G +   RLV D  TG  KGY F EY+++   + A 
Sbjct: 15  LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74

Query: 115 RDADGLVIDQHEIFVD 130
           R+ +G       + VD
Sbjct: 75  RNLNGREFSGRALRVD 90


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 54  PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 113
           P  TLFV  L+  T E+ LKE F   G +R  R+V D  TG SKG+ F+++  E     A
Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFD--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAA 626

Query: 114 YRDADGLVIDQHEIFVDYELERTLKGWIPRRLG-GGLGGK--KESGQLRFGGRDR 165
               +   ID +++ +D+   +   G+  R  G GG GG+     G+  FGGR R
Sbjct: 627 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGR 681



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 57  TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRD 116
           TL    L  +  +D+LKEVF    D   +RLV     G SKG A+IE+K E    K + +
Sbjct: 394 TLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 448

Query: 117 ADGLVIDQHEIFVDYELER 135
             G  ID   I + Y  E+
Sbjct: 449 KQGTEIDGRSISLYYTGEK 467



 Score = 31.2 bits (69), Expect = 0.89
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 57  TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEY 104
           TL ++ L+    E+ L+EVF +   I+    V     G SKGYAFIE+
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEF 530


>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
           b [Homo sapiens]
          Length = 471

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 44  YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101
           YVP     V+ D    LF+  L     +D++KE+ + +G ++   LV+D  TG SKGYAF
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304

Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129
            EY +     +A    +G+ +   ++ V
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246
           ER+     +ER  ++R R R H R R +  + R  +R         +R  RD R   R++
Sbjct: 8   ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58

Query: 247 KERGK 251
           + R K
Sbjct: 59  RRRSK 63



 Score = 31.2 bits (69), Expect = 0.89
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
           F + +N    + D     ++    RSRSR+R   SR+RDR   R R++R   R+  R
Sbjct: 7   FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60


>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
           [Homo sapiens]
          Length = 475

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 44  YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101
           YVP     V+ D    LF+  L     +D++KE+ + +G ++   LV+D  TG SKGYAF
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304

Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129
            EY +     +A    +G+ +   ++ V
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246
           ER+     +ER  ++R R R H R R +  + R  +R         +R  RD R   R++
Sbjct: 8   ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58

Query: 247 KERGK 251
           + R K
Sbjct: 59  RRRSK 63



 Score = 31.2 bits (69), Expect = 0.89
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
           F + +N    + D     ++    RSRSR+R   SR+RDR   R R++R   R+  R
Sbjct: 7   FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60


>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
          Length = 322

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 33/202 (16%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           +F+  L  +  E  +  VFS+YG+I  + LVRD  TG SKG+ F+ Y+++R+ I A  + 
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query: 118 DGLVIDQHEIFVDYELE-RTLKGW-----IPRRL-GGGLGGKKESGQLRFGGRD-RPFRK 169
           +G+ I    I VD+    R  K       + R+L   G G +  S  L     D +P +K
Sbjct: 98  NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKK 157

Query: 170 PINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDND 229
                      +++ K+E++++ + +E+               ++  Q  +P+   P   
Sbjct: 158 -----------HKKDKKEKKKKKKEKEK--------------ADREVQAEQPSSSSPRRK 192

Query: 230 WERERDFRDDRIKGREKKERGK 251
             +E+D    +    +  ER +
Sbjct: 193 TVKEKDDTGPKKHSSKNSERAQ 214



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%)

Query: 182 REGKRERRERSRSRERH--W------------DSRTRDRDHDRGREKRWQEREPTRVWPD 227
           RE K   R+R RS + H  W             SR+RD+ H   R +R +ERE +   P 
Sbjct: 260 REEKTRIRDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSHRHKRARRSRERESSN--PS 317

Query: 228 NDW 230
           + W
Sbjct: 318 DRW 320


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 38/83 (45%)

Query: 49  GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108
           G   D    L V  L     +D+ K +F   GDI   +LVRD +TG S GY F+ Y +  
Sbjct: 32  GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91

Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131
              KA    +GL +    I V Y
Sbjct: 92  DADKAINTLNGLKLQTKTIKVSY 114



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           L+V+ L     + +++++FS+YG I   R++ D VTG S+G  FI + +     +A +  
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query: 118 DG 119
           +G
Sbjct: 187 NG 188



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 17/81 (20%), Positives = 37/81 (45%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           +FV  L+ +  E  L ++F  +G +  ++++RD  T   KG+ F+          A    
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 118 DGLVIDQHEIFVDYELERTLK 138
           +G  + +  + V ++  +  K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 38/83 (45%)

Query: 49  GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108
           G   D    L V  L     +D+ K +F   GDI   +LVRD +TG S GY F+ Y +  
Sbjct: 32  GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91

Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131
              KA    +GL +    I V Y
Sbjct: 92  DADKAINTLNGLKLQTKTIKVSY 114



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           L+V+ L     + +++++FS+YG I   R++ D VTG S+G  FI + +     +A +  
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186

Query: 118 DG 119
           +G
Sbjct: 187 NG 188



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 17/81 (20%), Positives = 37/81 (45%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           +FV  L+ +  E  L ++F  +G +  ++++RD  T   KG+ F+          A    
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 118 DGLVIDQHEIFVDYELERTLK 138
           +G  + +  + V ++  +  K
Sbjct: 339 NGYRLGERVLQVSFKTSKQHK 359


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LF+  LN +T E  L+ VF +YG I  + L++D  T  S+G+AF+ ++       A RD 
Sbjct: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151
           +G  +D   I V+       ER   G          PR  G G GG
Sbjct: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LF+  LN +T E  L+ VF +YG I  + L++D  T  S+G+AF+ ++       A RD 
Sbjct: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151
           +G  +D   I V+       ER   G          PR  G G GG
Sbjct: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 53  DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
           D L   F+  LN +T +  L+ VF +YG I  + L++D  T  S+G+AFI ++       
Sbjct: 5   DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64

Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
           A RD +G  +D   I V+   + + +               PR L GG GG
Sbjct: 65  AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)

Query: 53  DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
           D L   F+  LN +T +  L+ VF +YG I  + L++D  T  S+G+AFI ++       
Sbjct: 5   DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64

Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
           A RD +G  +D   I V+   + + +               PR L GG GG
Sbjct: 65  AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 29/83 (34%), Positives = 47/83 (56%)

Query: 53  DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
           DP   L V  L+L T E  L+EVFS+YG I  + +V D  +  S+G+AF+ ++      +
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174

Query: 113 AYRDADGLVIDQHEIFVDYELER 135
           A   A+G+ +D   I VD+ + +
Sbjct: 175 AKERANGMELDGRRIRVDFSITK 197


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LF+  LN +T E  L+ VF +YG I  + L++D  T  S+G+AF+ ++       A RD 
Sbjct: 10  LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 118 DGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
           +G  +D   I V+   + + +               PR L GG GG
Sbjct: 70  NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG 115


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 34/163 (20%)

Query: 103 EYKEERAVIKAY-----RDADGLVIDQH-EIFVDYELERTLKGWIPRRLGGGLGGKKESG 156
           E+ +E  V + +     RD    V++ + + + DYE+ER  +G           G+ E+ 
Sbjct: 340 EFDKENEVFRDWNSRIPRDVRDTVLEPYADPYYDYEIERFWRG-----------GQYENF 388

Query: 157 QLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRW 216
           ++++   + P+    N    + +  RE ++  RER R R+R  + R R+R+ +R      
Sbjct: 389 RVQYTETE-PYH---NYRERERERERENRQRERERERERDRERERRQRERERERE----- 439

Query: 217 QEREPTRVWPDNDWERERDFRDD-----RIKGREK---KERGK 251
            ER+  R     +WERER  RD+     R + REK   KE+GK
Sbjct: 440 HERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGK 482



 Score = 32.7 bits (73), Expect = 0.31
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 177 KNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWP 226
           + D  R+ ++E  ER R++    D + RDRD ++ REK   + +P    P
Sbjct: 441 ERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQP 490


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 56  LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115
           + L+V  L+    ED L+ +F  +G I  ++L+ D  TG SKGY FI + +     KA  
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query: 116 DADGLVIDQHEIFVDYELERT 136
             +G  +    + V +  ERT
Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 57  TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110
           T+F  +L  + +   L+E FS  G +R +R++ D  +  SKG A++E+ +  +V
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221
           + P++K  N     N      K+ ++ +SRSR      S++++R   R RE K+ + RE 
Sbjct: 12  EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71

Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251
            R        R ++ R  R + R+++ RG+
Sbjct: 72  KR-------SRSKERRRSRSRSRDRRFRGR 94


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 56  LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115
           + L+V  L+    ED L+ +F  +G I  ++L+ D  TG SKGY FI + +     KA  
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309

Query: 116 DADGLVIDQHEIFVDYELERT 136
             +G  +    + V +  ERT
Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 57  TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110
           T+F  +L  + +   L+E FS  G +R +R++ D  +  SKG A++E+ +  +V
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221
           + P++K  N     N      K+ ++ +SRSR      S++++R   R RE K+ + RE 
Sbjct: 12  EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71

Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251
            R        R ++ R  R + R+++ RG+
Sbjct: 72  KR-------SRSKERRRSRSRSRDRRFRGR 94


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 58  LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
           LFV  LN  T E  L++ FS +G I  + +V+D  T  S+G+ FI +        A R  
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query: 118 DGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167
           +G  +D  +I VD+   ++ +G      GGG G          GG D+ +
Sbjct: 68  NGESLDGRQIRVDH-AGKSARG----TRGGGFGAHGRGRSYSRGGGDQGY 112


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,234,742
Number of Sequences: 37866
Number of extensions: 490851
Number of successful extensions: 4778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 1708
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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