BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform b [Homo sapiens] (251 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 524 e-149 gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 524 e-149 gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 513 e-146 gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 151 5e-37 gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens] 75 4e-14 gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 66 3e-11 gi|9558733 transformer-2 alpha [Homo sapiens] 62 6e-10 gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 60 2e-09 gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 59 5e-09 gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 54 1e-07 gi|226497734 RNA binding motif protein 19 [Homo sapiens] 54 1e-07 gi|226497654 RNA binding motif protein 19 [Homo sapiens] 54 1e-07 gi|226497574 RNA binding motif protein 19 [Homo sapiens] 54 1e-07 gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 54 1e-07 gi|55956788 nucleolin [Homo sapiens] 54 2e-07 gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo... 53 3e-07 gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor... 53 3e-07 gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 53 3e-07 gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 52 4e-07 gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 52 4e-07 gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 52 6e-07 gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 52 6e-07 gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 51 8e-07 gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 51 8e-07 gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 51 8e-07 gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 51 8e-07 gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 51 1e-06 gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 50 1e-06 gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 50 1e-06 gi|5803137 RNA binding motif protein 3 [Homo sapiens] 50 2e-06 >gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform b [Homo sapiens] Length = 251 Score = 524 bits (1349), Expect = e-149 Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV Sbjct: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60 Query: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL Sbjct: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120 Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180 Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240 Query: 241 IKGREKKERGK 251 IKGREKKERGK Sbjct: 241 IKGREKKERGK 251 >gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform b [Homo sapiens] Length = 251 Score = 524 bits (1349), Expect = e-149 Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV Sbjct: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60 Query: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL Sbjct: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120 Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180 Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240 Query: 241 IKGREKKERGK 251 IKGREKKERGK Sbjct: 241 IKGREKKERGK 251 >gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform a [Homo sapiens] Length = 246 Score = 513 bits (1322), Expect = e-146 Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 6 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 65 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL Sbjct: 1 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 60 Query: 66 QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 125 QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH Sbjct: 61 QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 120 Query: 126 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 185 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK Sbjct: 121 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 180 Query: 186 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 245 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE Sbjct: 181 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 240 Query: 246 KKERGK 251 KKERGK Sbjct: 241 KKERGK 246 >gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapiens] Length = 437 Score = 151 bits (382), Expect = 5e-37 Identities = 90/206 (43%), Positives = 120/206 (58%), Gaps = 9/206 (4%) Query: 52 GDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVI 111 GD TLFVAR+N T E KL+ F YG I+R+ +V +G +GYAFIEY+ ER + Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 Query: 112 KAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESG---QLRFGGRDRPFR 168 AY+ ADG ID + VD E RT+KGW PRRLGGGLGG + G +R GRD R Sbjct: 159 SAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR 218 Query: 169 ---KPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVW 225 +P P+ D R+ +RERRERSR R++ + R R R DR R R +++E R Sbjct: 219 YDERPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERRRS 277 Query: 226 PD--NDWERERDFRDDRIKGREKKER 249 + D +R+R R R + R ++ER Sbjct: 278 RERSKDKDRDRKRRSSRSRERARRER 303 Score = 32.7 bits (73), Expect = 0.31 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Query: 182 REGKRERRERSRS-RERHWDSRTRDRDHDRGREKRWQEREPTR 223 R+ RERR RS RER R RDRD DR RE + ER R Sbjct: 348 RDRDRERRRSHRSERERR---RDRDRDRDRDREHKRGERGSER 387 Score = 32.0 bits (71), Expect = 0.52 Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 156 GQLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREK 214 G+L G D P K + + +R + RR+R R R+R + + +R +RGR++ Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDE 391 Score = 31.6 bits (70), Expect = 0.68 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223 R R RER R R+R R RDR+H RG + R+ R Sbjct: 355 RRSHRSERERRRDRDR---DRDRDREHKRGERGSERGRDEAR 393 Score = 30.4 bits (67), Expect = 1.5 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Query: 200 DSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREKKERGK 251 + + RDRD +R R R ERE R D D +R+RD R G ERG+ Sbjct: 344 EEKGRDRDRERRRSHR-SERERRR---DRDRDRDRDREHKR--GERGSERGR 389 >gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens] Length = 492 Score = 75.5 bits (184), Expect = 4e-14 Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%) Query: 14 KEYDPLKAGSIDGTDEDPHDR-AVWRAMLARYVPN--KGVIGDPLLTLFVARLNLQTKED 70 +E D K S + +E ++ A +A+L V + I P LFV +LN T ++ Sbjct: 195 EEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDE 254 Query: 71 KLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVD 130 L+ +FSR+G IR ++RD TG S YAFIE+++E KA+ D ++ID I VD Sbjct: 255 DLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVD 314 Query: 131 YELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPV---------VKNDLY 181 + W G GGK F ++ KP NL + K DL Sbjct: 315 FSQSVAKVKW------KGKGGKYTKSD--FKEYEKEQDKPPNLVLKDKVKPKQDTKYDLI 366 Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR---------------VWP 226 + E+ E S+S H + + + H EK ++ P + Sbjct: 367 LD---EQAEDSKSSHSHTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMGFGHYEEE 423 Query: 227 DNDWERERDFRDDRIKGREK 246 ++ WE+++ + DR + R + Sbjct: 424 ESCWEKQKSEKRDRTQNRSR 443 >gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] Length = 221 Score = 65.9 bits (159), Expect = 3e-11 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 28/176 (15%) Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114 + +L V L +T D L+ VF +YG + + + RD T S+G+AF+ + ++R A Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72 Query: 115 RDADGLVIDQHEIFVDY-------ELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167 DG V+D E+ V + + +G PRR GGG +G R R Sbjct: 73 DAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGG----------GYGRRSRSP 122 Query: 168 RKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223 R+ R + R RSRSR R SR++ R R R + + R Sbjct: 123 RR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSAR 167 >gi|9558733 transformer-2 alpha [Homo sapiens] Length = 282 Score = 61.6 bits (148), Expect = 6e-10 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 19/167 (11%) Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112 DP L V L+L T E L+EVFSRYG + + +V D TG S+G+AF+ ++ + Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175 Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRL------------GGGLGGKKESGQLRF 160 A A+G+ +D I VDY + + P GGG GG G+ R Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235 Query: 161 GGRDRPFRKPINLPVVKNDLYREGKRE-----RRERSRSRERHWDSR 202 DR + + + ++ YR +R R RSRSR R + R Sbjct: 236 SYYDRGYDRGYDR--YEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPR 280 >gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sapiens] Length = 1067 Score = 59.7 bits (143), Expect = 2e-09 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LF+ LNL+T E LK F +YG I ++ L++D T S+G+AF+ ++ A RD Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69 Query: 118 DGLVIDQHEIFVDYELERTLKG--WIPRRLGGGLGGKKESGQLRFGGRDRPFRKP 170 +G +D I V ++ K W+P G G + GG P R P Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGS--GSRSRFSHRTRGGGSSPQRPP 122 >gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] Length = 282 Score = 58.5 bits (140), Expect = 5e-09 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 23/197 (11%) Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112 D ++TL V L +T D L+ VF +YG + + + R+ T +G+AF+ + + R Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70 Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPIN 172 A DG +D E+ V ++ R + +PR G G+ G +G R R + + Sbjct: 71 AEAAMDGAELDGRELRV--QVARYGRRDLPRSRQGEPRGRSRGG--GYGRRSRSYGR--- 123 Query: 173 LPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWER 232 R RR RSRSR S +R R R R R+ +R + + R Sbjct: 124 ---------RSRSPRRRHRSRSR---GPSCSRSRSRSRYRGSRYSRSPYSR----SPYSR 167 Query: 233 ERDFRDDRIKGREKKER 249 R R + R ++ R Sbjct: 168 SRYSRSPYSRSRYRESR 184 >gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens] Length = 616 Score = 54.3 bits (129), Expect = 1e-07 Identities = 26/76 (34%), Positives = 42/76 (55%) Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114 L ++FV + + E++LK++FS G + RLV D TG KGY F EY+++ + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 115 RDADGLVIDQHEIFVD 130 R+ +G + VD Sbjct: 75 RNLNGREFSGRALRVD 90 >gi|226497734 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110 P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++ Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 111 IKAYRDADGLVIDQHEIFV 129 KA + G V+D H++ V Sbjct: 788 QKALKQLQGHVVDGHKLEV 806 Score = 47.4 bits (111), Expect = 1e-05 Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 118 DGLVIDQHEIFV 129 DG V + V Sbjct: 464 DGQVFQGRMLHV 475 Score = 33.9 bits (76), Expect = 0.14 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114 + V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+ Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 >gi|226497654 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110 P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++ Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 111 IKAYRDADGLVIDQHEIFV 129 KA + G V+D H++ V Sbjct: 788 QKALKQLQGHVVDGHKLEV 806 Score = 47.4 bits (111), Expect = 1e-05 Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 118 DGLVIDQHEIFV 129 DG V + V Sbjct: 464 DGQVFQGRMLHV 475 Score = 33.9 bits (76), Expect = 0.14 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114 + V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+ Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 >gi|226497574 RNA binding motif protein 19 [Homo sapiens] Length = 960 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110 P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++ Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 111 IKAYRDADGLVIDQHEIFV 129 KA + G V+D H++ V Sbjct: 788 QKALKQLQGHVVDGHKLEV 806 Score = 47.4 bits (111), Expect = 1e-05 Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 118 DGLVIDQHEIFV 129 DG V + V Sbjct: 464 DGQVFQGRMLHV 475 Score = 33.9 bits (76), Expect = 0.14 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114 + V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+ Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 >gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] Length = 577 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/76 (34%), Positives = 42/76 (55%) Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114 L ++FV + + E++LK++FS G + RLV D TG KGY F EY+++ + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74 Query: 115 RDADGLVIDQHEIFVD 130 R+ +G + VD Sbjct: 75 RNLNGREFSGRALRVD 90 >gi|55956788 nucleolin [Homo sapiens] Length = 710 Score = 53.5 bits (127), Expect = 2e-07 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 113 P TLFV L+ T E+ LKE F G +R R+V D TG SKG+ F+++ E A Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFD--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAA 626 Query: 114 YRDADGLVIDQHEIFVDYELERTLKGWIPRRLG-GGLGGK--KESGQLRFGGRDR 165 + ID +++ +D+ + G+ R G GG GG+ G+ FGGR R Sbjct: 627 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGR 681 Score = 42.7 bits (99), Expect = 3e-04 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRD 116 TL L + +D+LKEVF D +RLV G SKG A+IE+K E K + + Sbjct: 394 TLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 448 Query: 117 ADGLVIDQHEIFVDYELER 135 G ID I + Y E+ Sbjct: 449 KQGTEIDGRSISLYYTGEK 467 Score = 31.2 bits (69), Expect = 0.89 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEY 104 TL ++ L+ E+ L+EVF + I+ V G SKGYAFIE+ Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEF 530 >gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens] Length = 471 Score = 52.8 bits (125), Expect = 3e-07 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 44 YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101 YVP V+ D LF+ L +D++KE+ + +G ++ LV+D TG SKGYAF Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304 Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129 EY + +A +G+ + ++ V Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Score = 32.0 bits (71), Expect = 0.52 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246 ER+ +ER ++R R R H R R + + R +R +R RD R R++ Sbjct: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58 Query: 247 KERGK 251 + R K Sbjct: 59 RRRSK 63 Score = 31.2 bits (69), Expect = 0.89 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223 F + +N + D ++ RSRSR+R SR+RDR R R++R R+ R Sbjct: 7 FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60 >gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a [Homo sapiens] Length = 475 Score = 52.8 bits (125), Expect = 3e-07 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 44 YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101 YVP V+ D LF+ L +D++KE+ + +G ++ LV+D TG SKGYAF Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304 Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129 EY + +A +G+ + ++ V Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332 Score = 32.0 bits (71), Expect = 0.52 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246 ER+ +ER ++R R R H R R + + R +R +R RD R R++ Sbjct: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58 Query: 247 KERGK 251 + R K Sbjct: 59 RRRSK 63 Score = 31.2 bits (69), Expect = 0.89 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223 F + +N + D ++ RSRSR+R SR+RDR R R++R R+ R Sbjct: 7 FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60 >gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] Length = 322 Score = 52.8 bits (125), Expect = 3e-07 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 33/202 (16%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 +F+ L + E + VFS+YG+I + LVRD TG SKG+ F+ Y+++R+ I A + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 118 DGLVIDQHEIFVDYELE-RTLKGW-----IPRRL-GGGLGGKKESGQLRFGGRD-RPFRK 169 +G+ I I VD+ R K + R+L G G + S L D +P +K Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKK 157 Query: 170 PINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDND 229 +++ K+E++++ + +E+ ++ Q +P+ P Sbjct: 158 -----------HKKDKKEKKKKKKEKEK--------------ADREVQAEQPSSSSPRRK 192 Query: 230 WERERDFRDDRIKGREKKERGK 251 +E+D + + ER + Sbjct: 193 TVKEKDDTGPKKHSSKNSERAQ 214 Score = 30.0 bits (66), Expect = 2.0 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%) Query: 182 REGKRERRERSRSRERH--W------------DSRTRDRDHDRGREKRWQEREPTRVWPD 227 RE K R+R RS + H W SR+RD+ H R +R +ERE + P Sbjct: 260 REEKTRIRDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSHRHKRARRSRERESSN--PS 317 Query: 228 NDW 230 + W Sbjct: 318 DRW 320 >gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] Length = 367 Score = 52.4 bits (124), Expect = 4e-07 Identities = 29/83 (34%), Positives = 38/83 (45%) Query: 49 GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108 G D L V L +D+ K +F GDI +LVRD +TG S GY F+ Y + Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91 Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131 KA +GL + I V Y Sbjct: 92 DADKAINTLNGLKLQTKTIKVSY 114 Score = 38.1 bits (87), Expect = 0.007 Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 L+V+ L + +++++FS+YG I R++ D VTG S+G FI + + +A + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 118 DG 119 +G Sbjct: 187 NG 188 Score = 35.0 bits (79), Expect = 0.062 Identities = 17/81 (20%), Positives = 37/81 (45%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 +FV L+ + E L ++F +G + ++++RD T KG+ F+ A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 118 DGLVIDQHEIFVDYELERTLK 138 +G + + + V ++ + K Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366 >gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] Length = 360 Score = 52.4 bits (124), Expect = 4e-07 Identities = 29/83 (34%), Positives = 38/83 (45%) Query: 49 GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108 G D L V L +D+ K +F GDI +LVRD +TG S GY F+ Y + Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91 Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131 KA +GL + I V Y Sbjct: 92 DADKAINTLNGLKLQTKTIKVSY 114 Score = 38.1 bits (87), Expect = 0.007 Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 L+V+ L + +++++FS+YG I R++ D VTG S+G FI + + +A + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 118 DG 119 +G Sbjct: 187 NG 188 Score = 35.0 bits (79), Expect = 0.062 Identities = 17/81 (20%), Positives = 37/81 (45%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 +FV L+ + E L ++F +G + ++++RD T KG+ F+ A Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 118 DGLVIDQHEIFVDYELERTLK 138 +G + + + V ++ + K Sbjct: 339 NGYRLGERVLQVSFKTSKQHK 359 >gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 51.6 bits (122), Expect = 6e-07 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151 +G +D I V+ ER G PR G G GG Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115 >gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sapiens] Length = 390 Score = 51.6 bits (122), Expect = 6e-07 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151 +G +D I V+ ER G PR G G GG Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115 >gi|239752336 PREDICTED: similar to RNA binding motif protein, X-linked [Homo sapiens] Length = 138 Score = 51.2 bits (121), Expect = 8e-07 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%) Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112 D L F+ LN +T + L+ VF +YG I + L++D T S+G+AFI ++ Sbjct: 5 DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64 Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151 A RD +G +D I V+ + + + PR L GG GG Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115 >gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo sapiens] Length = 138 Score = 51.2 bits (121), Expect = 8e-07 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%) Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112 D L F+ LN +T + L+ VF +YG I + L++D T S+G+AFI ++ Sbjct: 5 DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64 Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151 A RD +G +D I V+ + + + PR L GG GG Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115 >gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] Length = 288 Score = 51.2 bits (121), Expect = 8e-07 Identities = 29/83 (34%), Positives = 47/83 (56%) Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112 DP L V L+L T E L+EVFS+YG I + +V D + S+G+AF+ ++ + Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174 Query: 113 AYRDADGLVIDQHEIFVDYELER 135 A A+G+ +D I VD+ + + Sbjct: 175 AKERANGMELDGRRIRVDFSITK 197 >gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] Length = 391 Score = 51.2 bits (121), Expect = 8e-07 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 118 DGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151 +G +D I V+ + + + PR L GG GG Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG 115 >gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] Length = 953 Score = 50.8 bits (120), Expect = 1e-06 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 34/163 (20%) Query: 103 EYKEERAVIKAY-----RDADGLVIDQH-EIFVDYELERTLKGWIPRRLGGGLGGKKESG 156 E+ +E V + + RD V++ + + + DYE+ER +G G+ E+ Sbjct: 340 EFDKENEVFRDWNSRIPRDVRDTVLEPYADPYYDYEIERFWRG-----------GQYENF 388 Query: 157 QLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRW 216 ++++ + P+ N + + RE ++ RER R R+R + R R+R+ +R Sbjct: 389 RVQYTETE-PYH---NYRERERERERENRQRERERERERDRERERRQRERERERE----- 439 Query: 217 QEREPTRVWPDNDWERERDFRDD-----RIKGREK---KERGK 251 ER+ R +WERER RD+ R + REK KE+GK Sbjct: 440 HERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGK 482 Score = 32.7 bits (73), Expect = 0.31 Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 177 KNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWP 226 + D R+ ++E ER R++ D + RDRD ++ REK + +P P Sbjct: 441 ERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQP 490 >gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] Length = 524 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/81 (32%), Positives = 41/81 (50%) Query: 56 LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115 + L+V L+ ED L+ +F +G I ++L+ D TG SKGY FI + + KA Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 116 DADGLVIDQHEIFVDYELERT 136 +G + + V + ERT Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330 Score = 35.0 bits (79), Expect = 0.062 Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110 T+F +L + + L+E FS G +R +R++ D + SKG A++E+ + +V Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207 Score = 33.9 bits (76), Expect = 0.14 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%) Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221 + P++K N N K+ ++ +SRSR S++++R R RE K+ + RE Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71 Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251 R R ++ R R + R+++ RG+ Sbjct: 72 KR-------SRSKERRRSRSRSRDRRFRGR 94 >gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] Length = 530 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/81 (32%), Positives = 41/81 (50%) Query: 56 LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115 + L+V L+ ED L+ +F +G I ++L+ D TG SKGY FI + + KA Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 116 DADGLVIDQHEIFVDYELERT 136 +G + + V + ERT Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330 Score = 35.0 bits (79), Expect = 0.062 Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110 T+F +L + + L+E FS G +R +R++ D + SKG A++E+ + +V Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207 Score = 33.9 bits (76), Expect = 0.14 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%) Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221 + P++K N N K+ ++ +SRSR S++++R R RE K+ + RE Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71 Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251 R R ++ R R + R+++ RG+ Sbjct: 72 KR-------SRSKERRRSRSRSRDRRFRGR 94 >gi|5803137 RNA binding motif protein 3 [Homo sapiens] Length = 157 Score = 49.7 bits (117), Expect = 2e-06 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%) Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117 LFV LN T E L++ FS +G I + +V+D T S+G+ FI + A R Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 118 DGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167 +G +D +I VD+ ++ +G GGG G GG D+ + Sbjct: 68 NGESLDGRQIRVDH-AGKSARG----TRGGGFGAHGRGRSYSRGGGDQGY 112 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,234,742 Number of Sequences: 37866 Number of extensions: 490851 Number of successful extensions: 4778 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 284 Number of HSP's successfully gapped in prelim test: 158 Number of HSP's that attempted gapping in prelim test: 1959 Number of HSP's gapped (non-prelim): 1708 length of query: 251 length of database: 18,247,518 effective HSP length: 100 effective length of query: 151 effective length of database: 14,460,918 effective search space: 2183598618 effective search space used: 2183598618 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.