TUB 25084

Name: TUB	Sequence: fasta or formatted (506aa)		NCBI GI: 29826279
Description: tubby isoform b		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [561aa] tubby isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 45 3 C cysteine 0.8 4 1 D aspartate 5.9 30 2 E glutamate 6.7 34 3 F phenylalanine 2.4 12 1 G glycine 7.1 36 3 H histidine 1.6 8 1 I isoleucine 3.2 16 2 K lysine 6.7 34 3 L leucine 7.1 36 2 M methionine 2.4 12 1 N asparagine 4.0 20 1 P proline 5.1 26 1 Q glutamine 6.3 32 2 R arginine 7.1 36 2 S serine 10.3 52 5 T threonine 5.7 29 1 V valine 5.5 28 1 W tryptophan 0.6 3 1 Y tyrosine 2.6 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tubby isoform b TUB 0.969 tubby isoform a TULP3 0.444 tubby like protein 3 isoform 1 TULP3 0.431 tubby like protein 3 isoform 2 TULP1 0.405 tubby like protein 1 TULP2 0.314 tubby like protein 2 TULP4 0.054 tubby like protein 4 isoform 1 NOLC1 0.026 nucleolar and coiled-body phosphoprotein 1 TCOF1 0.024 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.024 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.024 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.024 Treacher Collins-Franceschetti syndrome 1 isoform c ... LOC100288496 0.023 PREDICTED: hypothetical protein XP_002342747 TCOF1 0.022 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.022 Treacher Collins-Franceschetti syndrome 1 isoform b ... SETD1A 0.020 SET domain containing 1A MARCKS 0.019 myristoylated alanine-rich protein kinase C substra... MLLT1 0.017 myeloid/lymphoid or mixed-lineage leukemia (trithora... HUWE1 0.017 HECT, UBA and WWE domain containing 1 FLJ37078 0.016 hypothetical protein LOC222183 SAMD1 0.016 sterile alpha motif domain containing 1 MAP7D1 0.016 MAP7 domain containing 1 KIAA0284 0.016 hypothetical protein LOC283638 isoform 2 KIAA0284 0.016 hypothetical protein LOC283638 isoform 1 SRRM2 0.015 splicing coactivator subunit SRm300 GPATCH1 0.015 G patch domain containing 1 HIRIP3 0.014 HIRA interacting protein 3 CDC2L2 0.014 cell division cycle 2-like 2 isoform 4 CDC2L2 0.014 cell division cycle 2-like 2 isoform 1 CDC2L1 0.014 cell division cycle 2-like 1 (PITSLRE proteins) isof... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.