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Search of human proteins with 122937319
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937319 even-skipped homeobox 2 [Homo sapiens]
(476 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 942 0.0
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 340 2e-93
gi|84570137 homeobox B3 [Homo sapiens] 97 4e-20
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 86 7e-17
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 86 1e-16
gi|4504465 homeobox B2 [Homo sapiens] 84 2e-16
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 82 8e-16
gi|24497589 aristaless related homeobox [Homo sapiens] 82 8e-16
gi|10140847 homeobox A2 [Homo sapiens] 81 2e-15
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 80 3e-15
gi|24497515 homeobox A3 isoform b [Homo sapiens] 80 5e-15
gi|24497513 homeobox A3 isoform a [Homo sapiens] 80 5e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens] 80 5e-15
gi|24497517 homeobox A5 [Homo sapiens] 80 5e-15
gi|157743259 H6 family homeobox 3 [Homo sapiens] 79 7e-15
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 79 7e-15
gi|4502365 NK3 homeobox 2 [Homo sapiens] 79 9e-15
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 78 2e-14
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 78 2e-14
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 77 4e-14
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 77 4e-14
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 76 6e-14
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 76 8e-14
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 76 8e-14
gi|19923391 homeobox D3 [Homo sapiens] 75 1e-13
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 75 1e-13
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 74 4e-13
gi|24497526 homeobox B1 [Homo sapiens] 72 8e-13
gi|5031759 homeobox A11 [Homo sapiens] 72 1e-12
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 72 1e-12
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 942 bits (2435), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Query: 1 MMERIRKEMILMERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPRLPSAPLHS 60
MMERIRKEMILMERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPRLPSAPLHS
Sbjct: 1 MMERIRKEMILMERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPRLPSAPLHS 60
Query: 61 ALGELPAKGKFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEV 120
ALGELPAKGKFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEV
Sbjct: 61 ALGELPAKGKFEIDTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEV 120
Query: 121 GCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGG 180
GCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGG
Sbjct: 121 GCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGG 180
Query: 181 SGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 240
SGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR
Sbjct: 181 SGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 240
Query: 241 MKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAA 300
MKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAA
Sbjct: 241 MKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAA 300
Query: 301 ASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAA 360
ASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAA
Sbjct: 301 ASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAA 360
Query: 361 AAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGG 420
AAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGG
Sbjct: 361 AAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGG 420
Query: 421 GGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR 476
GGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR
Sbjct: 421 GGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR 476
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 340 bits (871), Expect = 2e-93
Identities = 219/483 (45%), Positives = 267/483 (55%), Gaps = 91/483 (18%)
Query: 6 RKEMIL-MERGLHSPTAGKRFSNLSNSAGNAVLEALENSQHPARLSPRLPSAPLHSALGE 64
RK+M++ ++ G GKR SNLS + G+ + E E LSPR G
Sbjct: 4 RKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATRERGGG 63
Query: 65 LPAKGKFEIDTLFNLQHTGSESTVSSEISSAA-----------ESRKKPGHYSEAAAEAD 113
P E + + L + + +++ AA +S G S + E+D
Sbjct: 64 GP-----EEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESD 118
Query: 114 MSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSG 173
++EV C+ G A+ + + G SGS A + GS +GGSGG G
Sbjct: 119 FYEEIEVSCT---PDCATGNAEYQHSKG-----SGSEALVGSPNGGSETPKSNGGSGGGG 170
Query: 174 GSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIK 233
L S S DQ+RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIK
Sbjct: 171 SQGTLACSAS--DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIK 228
Query: 234 VWFQNRRMKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVT 293
VWFQNRRMKDKRQRLAM+WPHPADP+FYTYMM+HAAA G LPYPF SH+PL YY VG+
Sbjct: 229 VWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLG 288
Query: 294 AAAAAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGL 353
AA+ AA+AA+SPF+ S+RPLDTFR LS PY RPELLC+FRHP LY PA G
Sbjct: 289 AAS-------AASAAASPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLG- 340
Query: 354 NSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRG 413
A+AG PCSCL+CHS + A AAAA
Sbjct: 341 --------------------ASAG-------GPCSCLACHSGPANGLAPRAAAA------ 367
Query: 414 GGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAP 473
SDF C A+ RS+S FL ++ +VLSK + DQR+E P
Sbjct: 368 ---------------------SDFTC-ASTSRSDS-FLTFAPSVLSKASSVALDQREEVP 404
Query: 474 LTR 476
LTR
Sbjct: 405 LTR 407
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 96.7 bits (239), Expect = 4e-20
Identities = 51/105 (48%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 149 SAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGS----GADQVRRYRTAFTREQIARLE 204
++ GT G G G GGSGGSGG GG G G+ +R RTA+T Q+ LE
Sbjct: 145 NSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELE 204
Query: 205 KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 249
KEF+ Y+ RPRR E+A LNL E IK+WFQNRRMK K+ + A
Sbjct: 205 KEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKA 249
Score = 65.5 bits (158), Expect = 1e-10
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 295 AAAAAAASGAAAAASSPFATSIRPLDTFRALSH-------------------PYSRP-EL 334
AAAA ++ S+ F + P F+A +H P+++ EL
Sbjct: 10 AAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKEL 69
Query: 335 LCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCL---- 390
S PGL P +A + SAA +A + ++ + PP G S L
Sbjct: 70 NGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQI 129
Query: 391 ------SCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAP 444
S +S+ + A G GGGGGGG GG GGGGG G GG SAA+
Sbjct: 130 FPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK 189
Query: 445 RSESGFLPYSAAVLSK 460
R+ + + L K
Sbjct: 190 RARTAYTSAQLVELEK 205
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 85.9 bits (211), Expect = 7e-17
Identities = 113/369 (30%), Positives = 141/369 (38%), Gaps = 119/369 (32%)
Query: 129 GGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGS------LHGGSGGSGGSAALGGSG 182
G L AA LKE G ++ SG+A S S S L + GS L G
Sbjct: 37 GNLPAAFLKEPQG-AFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILP-KG 94
Query: 183 SGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 242
D+ +R RT+FT EQ+ RLE EF R YV R ELA LNL ET +KVWFQNRR K
Sbjct: 95 LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTK 154
Query: 243 DKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAAS 302
K+ + S +++ AAT S+
Sbjct: 155 QKKDQ--------GKDSELRSVVSETAATCSV---------------------------- 178
Query: 303 GAAAAASSPFATSIRPLDTFRALSHPYSRPELL---------CSFRHPGLYQAPAAAAGL 353
+R L+ R LS P P LL + R P L PA AG
Sbjct: 179 -------------LRLLEQGRLLSPP-GLPALLPPCATGALGSALRGPSL---PALGAG- 220
Query: 354 NSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRG 413
AA+ +AAAAAAAA + AA+ PP+ G AP
Sbjct: 221 --AAAGSAAAAAAAAPGPAGAASPHPPAVGGAP--------------------------- 251
Query: 414 GGGGGGGGGGGGGGGAGAGGGSDFGCS------------AAAPRSESGFL-----PYSAA 456
G G G GG GA A G S F ++AP + +G L SA
Sbjct: 252 --GPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSAR 309
Query: 457 VLSKTAVSP 465
LS +A P
Sbjct: 310 YLSSSAFEP 318
Score = 31.2 bits (69), Expect = 2.2
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 379 PPSGGSAPCSCL---SCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGS 435
PP A S L S + + AAA +AAAAA + G G GG G G
Sbjct: 198 PPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAG 257
Query: 436 DFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLT 475
G A AP +G +S V S S + APLT
Sbjct: 258 PGGLHAGAP--AAGHSLFSLPVPSLLG-SVASRLSSAPLT 294
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 85.5 bits (210), Expect = 1e-16
Identities = 81/259 (31%), Positives = 107/259 (41%), Gaps = 50/259 (19%)
Query: 189 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 248
R+ R F++ Q+ LE+ F ++ Y+S P R LA++L L T +K+WFQNRR K KRQR
Sbjct: 149 RKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQ 208
Query: 249 AMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAA 308
S A HA P P V + G +A A GA
Sbjct: 209 DKSLELGA----------HA------PPPPPRRVAVPVLVRDGKPCVTPSAQAYGA---- 248
Query: 309 SSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAA 368
PYS S+ PA G ++AA+AAAAAAAAAA
Sbjct: 249 -------------------PYSVGASAYSYN-----SFPAYGYGNSAAAAAAAAAAAAAA 284
Query: 369 AASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG----- 423
AA S++ A P+GG S ++ A +AA + GG G GG
Sbjct: 285 AAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLH 344
Query: 424 -GGGGGAGAGGGSDFGCSA 441
G GA G+ G A
Sbjct: 345 QGTAAGAACAQGTLQGIRA 363
Score = 49.3 bits (116), Expect = 8e-06
Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 372 SAAAAGAPPSGGSAPCSCLS--------CHSSQSAAAAAAAAAAALGSRGGGGGGGGGGG 423
SA A GAP S G++ S S ++ +AAAAAAAAAAA S G GGGG
Sbjct: 242 SAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGG 301
Query: 424 GGGGGAGAGGGSDFGCSAA 442
GGGG + A CSAA
Sbjct: 302 GGGGTSAATTAMQPACSAA 320
Score = 31.2 bits (69), Expect = 2.2
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 118 VEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAA 177
V A +P +GA+ N+ Y SAA +A+ + + + S G A
Sbjct: 239 VTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAG 298
Query: 178 LGGSGSG 184
GG G G
Sbjct: 299 GGGGGGG 305
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/105 (45%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 142 KGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVRRYRTAFTREQIA 201
K A+ S + T+ S + S + + GS G LG +G RR RTA+T Q+
Sbjct: 101 KKSAKKPSQSATSPSPAASAVPASGVGSPADG----LGLPEAGGGGARRLRTAYTNTQLL 156
Query: 202 RLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 246
LEKEF+ Y+ RPRR E+AA L+L E +KVWFQNRRMK KRQ
Sbjct: 157 ELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 82.4 bits (202), Expect = 8e-16
Identities = 62/165 (37%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 288 PHVGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPE----LLCSFRHPGL 343
P +G T A AA + S ++ +F HP+ R C+ L
Sbjct: 10 PRLGSTPLAMLAATCNKIGSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSL 69
Query: 344 YQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAA 403
+ A N +S+AAAAAAAAAAA++A + + GGS S S SS +AAAAAA
Sbjct: 70 SSFGVSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAA 129
Query: 404 AAAAALGSR-------------GGGGGGGGGGGGGGGGAGAGGGS 435
AAAAA S GG GGGGGGGGGG A + GS
Sbjct: 130 AAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGGSSAHSQDGS 174
Score = 43.1 bits (100), Expect = 5e-04
Identities = 76/312 (24%), Positives = 117/312 (37%), Gaps = 50/312 (16%)
Query: 108 AAAEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHG 167
AAA A ++ V S SPG + + A + +AA ++ A+ + G
Sbjct: 91 AAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPG 150
Query: 168 GSGGSGGSAALGGSGSGA-DQVRRYRTAF---TREQIARLEKEFYRENYVS------RPR 217
SGGSGG GG GS A Q ++ F + L+ + R +P
Sbjct: 151 VSGGSGGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVDGLQGIYPRVGMAHPYESWFKPS 210
Query: 218 RCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHPADPSFYTYM--MTHAAATGSLP 275
L AA + W+ + W +P+ + H AA G L
Sbjct: 211 HPGLGAAGEVGSAGASSWWD----------VGAGWIDVQNPNSAAALPGSLHPAA-GGLQ 259
Query: 276 YPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRAL---SHPYSRP 332
HS PL Y + + + +A +SGA++ SP + +D F+ + S+P S P
Sbjct: 260 TSLHS--PLGGY-NSDYSGLSHSAFSSGASSHLLSPAGQHL--MDGFKPVLPGSYPDSAP 314
Query: 333 ELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSC 392
+P A AG S SA +A + SSA G A C C +C
Sbjct: 315 -------------SPLAGAG-GSMLSAGPSAPLGGSPRSSARR-----YSGRATCDCPNC 355
Query: 393 HSSQSAAAAAAA 404
++ A A+
Sbjct: 356 QEAERLGPAGAS 367
Score = 37.4 bits (85), Expect = 0.030
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 60 SALGELPAKGKFEIDTLF-NLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDV 118
S LGE P G + L GS S S +S ++ S K H + ++ + +S
Sbjct: 4 SLLGEEPRLGSTPLAMLAATCNKIGSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCN 63
Query: 119 EVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAAL 178
VG S+L S G GA++ G + S +AA +A+ + L S GGS GS+A
Sbjct: 64 VVG-SSLSSFGVSGASR------NGGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAF 116
Query: 179 GGSGSGA 185
+ S A
Sbjct: 117 SLTSSSA 123
Score = 35.0 bits (79), Expect = 0.15
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 413 GGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAP 444
GGGGGGG G G GG G+ S+ + + P
Sbjct: 458 GGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 489
Score = 34.3 bits (77), Expect = 0.25
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 421 GGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPD 467
GGGGGGG AG+G G G + S +G P + L + PP+
Sbjct: 458 GGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPPCHSPEL----LQPPE 500
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 411 SRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAA 442
+ GGGGGGG G G GG G +D SAA
Sbjct: 455 THSGGGGGGGSAGSGSGGK-KGSDTDSEHSAA 485
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 82.4 bits (202), Expect = 8e-16
Identities = 82/268 (30%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 134 AQLKENNGKGYAESGSAAGTTTSASGSGLGSL----------HGGSGGSGGSAALGGSGS 183
A LKE A +G+ A +A + G L G G + +GS
Sbjct: 258 ALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGS 317
Query: 184 GADQ------VRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQ 237
+++ RRYRT FT Q+ LE+ F + +Y R ELA L+L E ++VWFQ
Sbjct: 318 DSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 377
Query: 238 NRRMKDKRQRLAMSWPHPADPSF-YTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAA 296
NRR K +++ A + HP F TH + PY S P H+ AA
Sbjct: 378 NRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLS----PYLDASPFPPHHPALDSAWTAA 433
Query: 297 AAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPA------AA 350
AAAAA+ + P + S+ P LS FRHP + +PA
Sbjct: 434 AAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLG----AAVFRHPA-FISPAFGRLFSTM 488
Query: 351 AGLNSAASAAAAAAAAAAAASSAAAAGA 378
A L SA++AAA A A A+GA
Sbjct: 489 APLTSASTAAALLRQPTPAVEGAVASGA 516
Score = 45.8 bits (107), Expect = 8e-05
Identities = 53/178 (29%), Positives = 69/178 (38%), Gaps = 35/178 (19%)
Query: 271 TGSLPYPFHSHVPLH----YYPHVGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRALS 326
+ S P+ H+P Y P G AAAAA+ AAAAA++ + P
Sbjct: 70 SSSAPFEAELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPRGEAPPPP 129
Query: 327 HPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAP 386
P +RP + P + A +AAAAAAAAAAA + + AP
Sbjct: 130 PPTARPG-----------ERP------DGAGAAAAAAAAAAAAWDTLKISQAP------Q 166
Query: 387 CSCLSCHSSQSAAAAAAAAAAALGSRGGGGG--------GGGGGGGGGGGAGAGGGSD 436
S S + A AL GG GG G GG G AG G G++
Sbjct: 167 VSISRSKSYRENGAPFVPPPPALDELGGPGGVTHPEERLGVAGGPGSAPAAGGGTGTE 224
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/102 (47%), Positives = 58/102 (56%), Gaps = 17/102 (16%)
Query: 149 SAAGTTTSASG----SGLGSLHGGSGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLE 204
+AA T +A+G S SL G GGS RR RTA+T Q+ LE
Sbjct: 113 AAAAATAAATGPACLSHKESLEIADGSGGGS-------------RRLRTAYTNTQLLELE 159
Query: 205 KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 246
KEF+ Y+ RPRR E+AA L+L E +KVWFQNRRMK KRQ
Sbjct: 160 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 80.5 bits (197), Expect = 3e-15
Identities = 72/228 (31%), Positives = 100/228 (43%), Gaps = 36/228 (15%)
Query: 126 RSPGGLGAAQLKENNGKGYAESGSAAGTTTSA--SGSGLGSLH---------GGSGGSGG 174
R+ GG G + + + E+G G A G G G++ G + G+
Sbjct: 119 RAHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEE 178
Query: 175 SAAL-----------GGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAA 223
++ L GG G G + ++ RT F+R Q+ +LE F + Y+S R LAA
Sbjct: 179 ASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAA 238
Query: 224 ALNLPETTIKVWFQNRRMKDKRQRL----AMSWPHPAD------PSFYTYMMTHAAATG- 272
+L L ET +K+WFQNRR K KRQ A S P P Y AAA G
Sbjct: 239 SLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGP 298
Query: 273 --SLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRP 318
+LP+P P P +G + A A A+ AAAS PF + P
Sbjct: 299 PATLPFPLAPAAPAPPPPLLGFSGALAYPLAA-FPAAASVPFLRAQMP 345
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 79.7 bits (195), Expect = 5e-15
Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 169 SGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLP 228
S SG S A S G +R RTA+T Q+ LEKEF+ Y+ RPRR E+A LNL
Sbjct: 14 SSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 73
Query: 229 ETTIKVWFQNRRMKDKRQRLAMSW----------PHPADPSFYTYMMTHAAATGSLPYPF 278
E IK+WFQNRRMK K+ + P P Y+ + + S+PY
Sbjct: 74 ERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEP 133
Query: 279 HSHVPLHYYPHVGVTAAAAAAAASGAAAAASSP 311
S P P A+ AS + A P
Sbjct: 134 QSPPPFSKPPQGTYGLPPASYPASLPSCAPPPP 166
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 79.7 bits (195), Expect = 5e-15
Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 169 SGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLP 228
S SG S A S G +R RTA+T Q+ LEKEF+ Y+ RPRR E+A LNL
Sbjct: 172 SSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 231
Query: 229 ETTIKVWFQNRRMKDKRQRLAMSW----------PHPADPSFYTYMMTHAAATGSLPYPF 278
E IK+WFQNRRMK K+ + P P Y+ + + S+PY
Sbjct: 232 ERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEP 291
Query: 279 HSHVPLHYYPHVGVTAAAAAAAASGAAAAASSP 311
S P P A+ AS + A P
Sbjct: 292 QSPPPFSKPPQGTYGLPPASYPASLPSCAPPPP 324
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 79.7 bits (195), Expect = 5e-15
Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 169 SGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLP 228
S SG S A S G +R RTA+T Q+ LEKEF+ Y+ RPRR E+A LNL
Sbjct: 172 SSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 231
Query: 229 ETTIKVWFQNRRMKDKRQRLAMSW----------PHPADPSFYTYMMTHAAATGSLPYPF 278
E IK+WFQNRRMK K+ + P P Y+ + + S+PY
Sbjct: 232 ERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEP 291
Query: 279 HSHVPLHYYPHVGVTAAAAAAAASGAAAAASSP 311
S P P A+ AS + A P
Sbjct: 292 QSPPPFSKPPQGTYGLPPASYPASLPSCAPPPP 324
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 79.7 bits (195), Expect = 5e-15
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 81 HTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEVGCSALRSPGGLGAAQLKENN 140
H GS S +SA+ + +P YS+ A + CSA+ G + +N+
Sbjct: 63 HFGSGERARSYAASASAAPAEP-RYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNS 121
Query: 141 GKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGS----------------- 183
+ + + AG+T +S G+G+ G + S+ + S
Sbjct: 122 LSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMR 181
Query: 184 ---------GADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKV 234
G + +R RTA+TR Q LEKEF+ Y++R RR E+A AL L E IK+
Sbjct: 182 KLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 241
Query: 235 WFQNRRMKDKR 245
WFQNRRMK K+
Sbjct: 242 WFQNRRMKWKK 252
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 79.3 bits (194), Expect = 7e-15
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 23/193 (11%)
Query: 136 LKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVRRYRTAF 195
L+E++ + + G AA AS + G G+ + A + ++ RT F
Sbjct: 177 LEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAES--PEKKPACRKKKTRTVF 234
Query: 196 TREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHP 255
+R Q+ +LE F + Y+S R LAA+L+L ET +K+WFQNRR K KRQ A
Sbjct: 235 SRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAA------ 288
Query: 256 ADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATS 315
++HAAA + VP+ Y H A AAAAA+GA S P T
Sbjct: 289 ---ELEAANLSHAAAQRIV------RVPILY--HENSAAEGAAAAAAGAPVPVSQPLLTF 337
Query: 316 IRPLDTFRALSHP 328
P+ SHP
Sbjct: 338 PHPV----YYSHP 346
Score = 32.7 bits (73), Expect = 0.74
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 328 PYSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGA 378
P+S LL H + L + ASAAAAAAAAAAAA+ A GA
Sbjct: 30 PFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGALEGA 80
Score = 32.3 bits (72), Expect = 0.97
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 379 PPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGG 417
PP P L +S +AAAAAAAAAAA G+ G G
Sbjct: 44 PPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGALEGAAG 82
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 79.3 bits (194), Expect = 7e-15
Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 102 PGHYSEA----AAEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSA 157
P H+SE AE + S E A S G ++ +E G +E ++
Sbjct: 168 PPHFSETFPSLPAEGKVYSSDEEKLEA--SAGDPAGSEQEEEGSGGDSEDDGFLDSSAGG 225
Query: 158 SGSGLG---SLHG--GSGGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENY 212
G+ LG L G G+G G+ G + + RR RTAFT EQ+ LEKEF+ + Y
Sbjct: 226 PGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKY 285
Query: 213 VSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 245
+S R ++A AL L E +K+WFQNRR K KR
Sbjct: 286 LSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 413 GGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRS-------ESGFLPYSAAVLSKTAVSP 465
GGG GG GGGGGGG G D PRS F+PY VL +
Sbjct: 5 GGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQALAPA 64
Query: 466 P 466
P
Sbjct: 65 P 65
Score = 29.6 bits (65), Expect = 6.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 410 GSRGGGGGGGGGGGGG 425
GS GG GGGGGGG G
Sbjct: 7 GSAPGGNGGGGGGGPG 22
Score = 29.6 bits (65), Expect = 6.3
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 341 PGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGG 383
P + P A G A AAAAAAAA AA ++ G P GG
Sbjct: 106 PSFAEPPDAFYGPQELA-AAAAAAAATAARNNPEPGGRRPEGG 147
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 79.0 bits (193), Expect = 9e-15
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 90 SEISSAAESRKKPGHYSEAAAEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGS 149
S +S ESR++ A+ + +G L A++ E G ++S
Sbjct: 95 SALSEENESRRRCADARGASGAGLAGGSLSLGQPVCE----LAASKDLEEEAAGRSDSEM 150
Query: 150 AAGTTTSAS-----------GSGLGSLHGGSGGSGGSAALGGSGSGADQV------RRYR 192
+A + S G+ + +L G+GG GGS G + + +R R
Sbjct: 151 SASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSR 210
Query: 193 TAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 249
AF+ Q+ LE+ F + Y+S P R +LAA+L L ET +K+WFQNRR K KR+++A
Sbjct: 211 AAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMA 267
Score = 31.6 bits (70), Expect = 1.6
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 365 AAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAA---------------L 409
A A AS A AG S G C + + AA + + + +
Sbjct: 108 ADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGV 167
Query: 410 GSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPR 445
G RG G GGGGG+G G ++ AAP+
Sbjct: 168 GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPK 203
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 78.2 bits (191), Expect = 2e-14
Identities = 54/126 (42%), Positives = 65/126 (51%), Gaps = 17/126 (13%)
Query: 327 HPYSRPE----LLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSG 382
HP+ R C+ L + A N +S+AAAAAAAAAAA++A + + G
Sbjct: 31 HPWKRSSSSSSASCNVVGSSLSSFGVSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCG 90
Query: 383 GSAPCSCLSCHSSQSAAAAAAAAAAALGSR-------------GGGGGGGGGGGGGGGGA 429
GS S S SS +AAAAAAAAAAA S GG GGGGGGGGGG A
Sbjct: 91 GSPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGGSSA 150
Query: 430 GAGGGS 435
+ GS
Sbjct: 151 HSQDGS 156
Score = 43.1 bits (100), Expect = 5e-04
Identities = 76/312 (24%), Positives = 117/312 (37%), Gaps = 50/312 (16%)
Query: 108 AAAEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHG 167
AAA A ++ V S SPG + + A + +AA ++ A+ + G
Sbjct: 73 AAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPG 132
Query: 168 GSGGSGGSAALGGSGSGA-DQVRRYRTAF---TREQIARLEKEFYRENYVS------RPR 217
SGGSGG GG GS A Q ++ F + L+ + R +P
Sbjct: 133 VSGGSGGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVDGLQGIYPRVGMAHPYESWFKPS 192
Query: 218 RCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHPADPSFYTYM--MTHAAATGSLP 275
L AA + W+ + W +P+ + H AA G L
Sbjct: 193 HPGLGAAGEVGSAGASSWWD----------VGAGWIDVQNPNSAAALPGSLHPAA-GGLQ 241
Query: 276 YPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRAL---SHPYSRP 332
HS PL Y + + + +A +SGA++ SP + +D F+ + S+P S P
Sbjct: 242 TSLHS--PLGGY-NSDYSGLSHSAFSSGASSHLLSPAGQHL--MDGFKPVLPGSYPDSAP 296
Query: 333 ELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSC 392
+P A AG S SA +A + SSA G A C C +C
Sbjct: 297 -------------SPLAGAG-GSMLSAGPSAPLGGSPRSSARR-----YSGRATCDCPNC 337
Query: 393 HSSQSAAAAAAA 404
++ A A+
Sbjct: 338 QEAERLGPAGAS 349
Score = 35.0 bits (79), Expect = 0.15
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 413 GGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAP 444
GGGGGGG G G GG G+ S+ + + P
Sbjct: 440 GGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPP 471
Score = 34.3 bits (77), Expect = 0.25
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 83 GSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEVGCSALRSPGGLGAAQLKENNGK 142
GS S S +S ++ S K H + ++ + +S VG S+L S G GA++
Sbjct: 10 GSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVG-SSLSSFGVSGASR------N 62
Query: 143 GYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGA 185
G + S +AA +A+ + L S GGS GS+A + S A
Sbjct: 63 GGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSA 105
Score = 34.3 bits (77), Expect = 0.25
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 421 GGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPD 467
GGGGGGG AG+G G G + S +G P + L + PP+
Sbjct: 440 GGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPPCHSPEL----LQPPE 482
Score = 31.6 bits (70), Expect = 1.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 411 SRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAA 442
+ GGGGGGG G G GG G +D SAA
Sbjct: 437 THSGGGGGGGSAGSGSGGK-KGSDTDSEHSAA 467
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 78.2 bits (191), Expect = 2e-14
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 174 GSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIK 233
G A G + ++ +R RTA+TR Q+ LEKEF Y+SRPRR ELA LNL E IK
Sbjct: 132 GQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 191
Query: 234 VWFQNRRMKDKRQ 246
+WFQNRRMK K++
Sbjct: 192 IWFQNRRMKWKKE 204
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 76.6 bits (187), Expect = 4e-14
Identities = 87/289 (30%), Positives = 116/289 (40%), Gaps = 40/289 (13%)
Query: 111 EADMSSDVEVGCSALR-SPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGS 169
E + S+ E AL S G QL E+ KG S S + SL GGS
Sbjct: 2 EFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASA---------SLPGGS 52
Query: 170 GGSGGSAALGGSGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPE 229
G S + RR RT FT +Q+ LE F R Y R E+A NL E
Sbjct: 53 PEDG---------SLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTE 103
Query: 230 TTIKVWFQNRRMKDKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPH 289
++VWF+NRR K R+R SF AA G L P+ P + Y +
Sbjct: 104 ARVRVWFKNRRAK-WRKRERSQQAELCKGSF-------AAPLGGLVPPYEEVYPGYSYGN 155
Query: 290 VGVTAAAAAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELL--CSFRHPGLYQAP 347
A A AA A +S ++ PL + S P S + + PG P
Sbjct: 156 WPPKALAPPLAAKTFPFAFNS---VNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGP 212
Query: 348 AAAAGLN--------SAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCS 388
A GL +A S+ A + A+AA++AAAA + P PC+
Sbjct: 213 GALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCN 261
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 76.6 bits (187), Expect = 4e-14
Identities = 75/252 (29%), Positives = 104/252 (41%), Gaps = 40/252 (15%)
Query: 47 ARLSPRLPSAPLHSALGELP-------AKGKFEIDTLFNLQHTGSESTVSSEISSAAES- 98
A L P LP A H + LP A+G TL G ++ + ++AA
Sbjct: 68 AALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQEAAAARKF 127
Query: 99 --RKKPGHYSEAAAEADMSSDVEVGCSALRSPGGL--------------------GAAQL 136
+ PG + AEA + +D E G L G L G +
Sbjct: 128 APQPLPGGGNFDKAEA-LQADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRGQGKDES 186
Query: 137 K-ENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGG--------SAALGGSGSGADQ 187
K E++ KG ES S +S L G S+ GS + +
Sbjct: 187 KVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGSTTSTGK 246
Query: 188 VRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 247
RR RTAFT EQ+ LEKEF+ + Y+S R ++A AL L E +K+WFQNRR K KR +
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306
Query: 248 LAMSWPHPADPS 259
+ +PS
Sbjct: 307 AGNANSKTGEPS 318
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 76.3 bits (186), Expect = 6e-14
Identities = 48/125 (38%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 121 GCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGG 180
G S LG G Y GS A T S S + G
Sbjct: 111 GGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKE-------SSDNQENRG 163
Query: 181 SGSGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRR 240
G+ + R+ RTAFT+EQ+ LE EF NY++R RR E+A L+L E +KVWFQNRR
Sbjct: 164 KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRR 223
Query: 241 MKDKR 245
MK KR
Sbjct: 224 MKWKR 228
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 75.9 bits (185), Expect = 8e-14
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 43/255 (16%)
Query: 111 EADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTT--SASGSGLGSLHGG 168
+ D + + E A + GG G + + +G AE+ ++ G T +A+ +
Sbjct: 160 DEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVA 219
Query: 169 SGGSGGSAALGGSGS----------------GAD----QVRRYRTAFTREQIARLEKEFY 208
G GG+AA GG+G+ G+D + RR RTAFT EQ+ LE +F
Sbjct: 220 QGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFK 279
Query: 209 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHP----------ADP 258
Y+S R LA +L+L ET +K+WFQNRR K K+Q P A P
Sbjct: 280 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGP 339
Query: 259 -SFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIR 317
+ ++ + + + P H P Y H G AA PF +S
Sbjct: 340 GTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH----------GPGGLVCAAQLPFLSSPA 389
Query: 318 PLDTFRALSHPYSRP 332
L F S Y P
Sbjct: 390 VLSPFVLGSQTYGAP 404
Score = 38.1 bits (87), Expect = 0.018
Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 40/187 (21%)
Query: 297 AAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSA 356
AA +GAA A+ TS LD + ++ C P APAA A SA
Sbjct: 26 AAPEGAGAARPAAPLRPTSFSVLDILDP--NKFNSRRRRCVLLGP---VAPAACAPCASA 80
Query: 357 ASAAAAAAA------------AAAAASSAAAAGAPP-------SGGSAPCSCLSCHSSQS 397
A A AA+ A A A AAGA P G A + + +SS
Sbjct: 81 PCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGG 140
Query: 398 AAAAAAA----------------AAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSA 441
+ +A A +RG GGGGG G G+G G ++ S
Sbjct: 141 GGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASP 200
Query: 442 AAPRSES 448
A E+
Sbjct: 201 GATVDEA 207
Score = 30.8 bits (68), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 420 GGGGGGGGGAGAGGGSDFGCSAAAPRSESG 449
GGGGG G GAG G G G S +P G
Sbjct: 328 GGGGGPGPGAGPGTGLPGGLSPLSPSPPMG 357
Score = 29.3 bits (64), Expect = 8.2
Identities = 22/83 (26%), Positives = 29/83 (34%)
Query: 363 AAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGG 422
A AA + A G G+ C + ++ A AAA G R G
Sbjct: 164 APETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPP 223
Query: 423 GGGGGGAGAGGGSDFGCSAAAPR 445
GG GAG +AA P+
Sbjct: 224 GGAAAPGGAGTTPQGTATAAKPK 246
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 75.9 bits (185), Expect = 8e-14
Identities = 46/115 (40%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 131 LGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVRR 190
LG G Y GS A T S S + G G+ + R+
Sbjct: 6 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKE-------SSDNQENRGKPEGSSKARK 58
Query: 191 YRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 245
RTAFT+EQ+ LE EF NY++R RR E+A L+L E +KVWFQNRRMK KR
Sbjct: 59 ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKR 113
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 75.5 bits (184), Expect = 1e-13
Identities = 71/230 (30%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 189 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 248
+R RTA+T Q+ LEKEF+ Y+ RPRR E+A LNL E IK+WFQNRRMK K+ +
Sbjct: 195 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 254
Query: 249 AMSWPH-PADPSFYTY-----MMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAAS 302
A H PA S H A +G LP VP Y A A +
Sbjct: 255 AKGILHSPASQSPERSPPLGGAAGHVAYSGQLP-----PVPGLAYDAPSPPAFAKSQPNM 309
Query: 303 GAAAAASSPFATSIRPLDTFRALSHPYSRPELLCS----FRHPGLYQAPAAAAGLNSAAS 358
AA ++P ++ + + A P P + S F L +P G N S
Sbjct: 310 YGLAAYTAPLSSCLPQQKRYAA---PEFEPHPMASNGGGFASANLQGSPVYVGG-NFVES 365
Query: 359 AAAAAA----------AAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSA 398
A A+ ++A+ + AA P + PC ++ SA
Sbjct: 366 MAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSA 415
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 75.5 bits (184), Expect = 1e-13
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 43/255 (16%)
Query: 111 EADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGSAAGTTT--SASGSGLGSLHGG 168
+ D + + E A + GG G + + +G AE+ ++ G T +A+ +
Sbjct: 563 DEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVA 622
Query: 169 SGGSGGSAALGGSGS----------------GAD----QVRRYRTAFTREQIARLEKEFY 208
G GG+AA GG+G+ G+D + RR RTAFT EQ+ LE +F
Sbjct: 623 PGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFK 682
Query: 209 RENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMSWPHP----------ADP 258
Y+S R LA +L+L ET +K+WFQNRR K K+Q P A P
Sbjct: 683 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGP 742
Query: 259 -SFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAASGAAAAASSPFATSIR 317
+ ++ + + + P H P Y H G AA PF +S
Sbjct: 743 GTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH----------GPGGLVCAAQLPFLSSPA 792
Query: 318 PLDTFRALSHPYSRP 332
L F S Y P
Sbjct: 793 VLSPFVLGSQTYGAP 807
Score = 38.1 bits (87), Expect = 0.018
Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 40/187 (21%)
Query: 297 AAAAASGAAAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSA 356
AA +GAA A+ TS LD + ++ C P APAA A SA
Sbjct: 429 AAPEGAGAARPAAPLRPTSFSVLDILDP--NKFNSRRRRCVLLGP---VAPAACAPCASA 483
Query: 357 ASAAAAAAA------------AAAAASSAAAAGAPP-------SGGSAPCSCLSCHSSQS 397
A A AA+ A A A AAGA P G A + + +SS
Sbjct: 484 PCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGG 543
Query: 398 AAAAAAA----------------AAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSA 441
+ +A A +RG GGGGG G G+G G ++ S
Sbjct: 544 GGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASP 603
Query: 442 AAPRSES 448
A E+
Sbjct: 604 GATVDEA 610
Score = 30.8 bits (68), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 420 GGGGGGGGGAGAGGGSDFGCSAAAPRSESG 449
GGGGG G GAG G G G S +P G
Sbjct: 731 GGGGGPGPGAGPGTGLPGGLSPLSPSPPMG 760
Score = 29.3 bits (64), Expect = 8.2
Identities = 22/83 (26%), Positives = 29/83 (34%)
Query: 363 AAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGG 422
A AA + A G G+ C + ++ A AAA G R G
Sbjct: 567 APETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAPGPP 626
Query: 423 GGGGGGAGAGGGSDFGCSAAAPR 445
GG GAG +AA P+
Sbjct: 627 GGAAAPGGAGTTPQGTATAAKPK 649
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 73.6 bits (179), Expect = 4e-13
Identities = 76/237 (32%), Positives = 106/237 (44%), Gaps = 27/237 (11%)
Query: 26 SNLSNSAGNAVLEA----LENSQHPARLSPRLPSAPLHSALGELPAKGKFEIDTLF--NL 79
S LS+ AG+ L L + + P LSPR S+ S+ P + E T
Sbjct: 11 SILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPAS-PGRDCLETGTPRPGGA 69
Query: 80 QHTGSESTVS-SEISSAAESRKKPGHY---------SEAAAEADMSSDVEVGCSALRSPG 129
G +S + ++S+ A+SR + AA A SS G A PG
Sbjct: 70 SGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSS---GQPAAPEPG 126
Query: 130 GLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVR 189
G AA+ E+ +SGS A + + G S L + R
Sbjct: 127 GRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRL-------KKPR 179
Query: 190 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 246
+ RTAFT Q+A+LE+ F R+ Y+S R ELAA+LNL +T +K W+QNRR K KRQ
Sbjct: 180 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 72.4 bits (176), Expect = 8e-13
Identities = 35/67 (52%), Positives = 43/67 (64%)
Query: 192 RTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMS 251
RT FT Q+ LEKEF+ Y+SR RR E+AA L L ET +K+WFQNRRMK K++
Sbjct: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEG 266
Query: 252 WPHPADP 258
PA P
Sbjct: 267 RVPPAPP 273
Score = 31.2 bits (69), Expect = 2.2
Identities = 42/171 (24%), Positives = 60/171 (35%), Gaps = 35/171 (20%)
Query: 335 LCSFRHPGLYQA--------PAAAAGLNSAASAAAAAAAAAAAA---SSAAAAGAPPS-- 381
LC+ R P Y A P++A ++S AS ++ A +S A PPS
Sbjct: 14 LCN-RGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTL 72
Query: 382 ---------GGSAPCSCLSCHS-------SQSAAAAAAAAAAALGSRGGGGGGGGGGGGG 425
G AP +C + QS ++ G++ GG G G GG
Sbjct: 73 GVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGA 132
Query: 426 GGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLTR 476
G G +G A F P A +LS+ +P P R
Sbjct: 133 GPGPYPPQHPPYGNEQTA-----SFAPAYADLLSEDKETPCPSEPNTPTAR 178
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 72.0 bits (175), Expect = 1e-12
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 74 DTLFNLQHTGSESTVSSEISSAAESRKKPGHYSEAAAEADMSSDVEVGCSALRSPGGLG- 132
D F + E+ SS+ + K P + +A A ++ S+ S GG G
Sbjct: 141 DQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGC 200
Query: 133 ---AAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGSGADQVR 189
AA +E + ES S+ +++ G +GGS G + R
Sbjct: 201 RETAAAAEEKERRRRPESSSSPESSS-------GHTEDKAGGSSGQ-----------RTR 242
Query: 190 RYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 245
+ R +T+ QI LE+EF+ Y+++ +R +L+ LNL + +K+WFQNRRMK+K+
Sbjct: 243 KKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298
Score = 35.8 bits (81), Expect = 0.087
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 329 YSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCS 388
Y PE L S +PG A + ++AAAAAA A A SS+ SGG C
Sbjct: 148 YGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSS------DSGGGGGCR 201
Query: 389 CLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGG 425
+ + + ++++ S G GG G
Sbjct: 202 ETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSG 238
Score = 29.6 bits (65), Expect = 6.3
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 26/125 (20%)
Query: 325 LSHPYSRPELLCSFRHPGLYQAPAAAA--GLNSAASAAAAAAAAAAAASS---------- 372
L+H YS EL+ H QAP+AA G A S+A A SS
Sbjct: 79 LAHCYSAEELV----HRDCLQAPSAAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNG 134
Query: 373 ----------AAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGG 422
A G P + S+ AA A +AAAA + G
Sbjct: 135 VLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDS 194
Query: 423 GGGGG 427
GGGGG
Sbjct: 195 GGGGG 199
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 72.0 bits (175), Expect = 1e-12
Identities = 48/149 (32%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 124 ALRSPGGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGS 183
A R+ G G + + +G G + + T +G+ S G S G G
Sbjct: 13 ARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGE 72
Query: 184 G-------------------------ADQVRRYRTAFTREQIARLEKEFYRENYVSRPRR 218
D+ +R RT+FT EQ+ RLE EF R YV R
Sbjct: 73 ADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRER 132
Query: 219 CELAAALNLPETTIKVWFQNRRMKDKRQR 247
ELA LNL ET +KVWFQNRR K K+ +
Sbjct: 133 TELARQLNLSETQVKVWFQNRRTKQKKDQ 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.125 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,289,863
Number of Sequences: 37866
Number of extensions: 1130435
Number of successful extensions: 55444
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 547
Number of HSP's that attempted gapping in prelim test: 14169
Number of HSP's gapped (non-prelim): 17995
length of query: 476
length of database: 18,247,518
effective HSP length: 106
effective length of query: 370
effective length of database: 14,233,722
effective search space: 5266477140
effective search space used: 5266477140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.