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Search of human proteins with 29244924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
(2715 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 5497 0.0
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 2026 0.0
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 1918 0.0
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 1916 0.0
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 533 e-151
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 519 e-146
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 515 e-145
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 514 e-145
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 514 e-145
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 514 e-145
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 494 e-139
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 407 e-113
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 402 e-111
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 399 e-110
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 378 e-104
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 366 e-100
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 364 e-100
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 364 e-100
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 360 1e-98
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 358 3e-98
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 358 3e-98
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 358 3e-98
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 358 3e-98
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 358 3e-98
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 358 3e-98
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 273 1e-72
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 273 2e-72
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 273 2e-72
gi|4557565 excision repair cross-complementing rodent repair def... 249 3e-65
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 225 4e-58
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 5497 bits (14260), Expect = 0.0
Identities = 2715/2715 (100%), Positives = 2715/2715 (100%)
Query: 1 MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQKD 60
MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQKD
Sbjct: 1 MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQKD 60
Query: 61 LYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKR 120
LYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKR
Sbjct: 61 LYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKR 120
Query: 121 KREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
KREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK
Sbjct: 121 KREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
Query: 181 SRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGR 240
SRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGR
Sbjct: 181 SRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGR 240
Query: 241 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 300
QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS
Sbjct: 241 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 300
Query: 301 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 360
KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH
Sbjct: 301 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 360
Query: 361 IFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDP 420
IFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDP
Sbjct: 361 IFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDP 420
Query: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRK 480
AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRK
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRK 480
Query: 481 NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYH 540
NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYH
Sbjct: 481 NCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYH 540
Query: 541 GSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEA 600
GSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEA
Sbjct: 541 GSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEA 600
Query: 601 HRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG 660
HRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG
Sbjct: 601 HRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG 660
Query: 661 DLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS 720
DLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS
Sbjct: 661 DLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS 720
Query: 721 FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQ 780
FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQ
Sbjct: 721 FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQ 780
Query: 781 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 840
AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA
Sbjct: 781 AAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA 840
Query: 841 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 900
AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK
Sbjct: 841 AIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK 900
Query: 901 AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGA 960
AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGA
Sbjct: 901 AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGA 960
Query: 961 YGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDP 1020
YGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDP
Sbjct: 961 YGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDP 1020
Query: 1021 NFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPT 1080
NFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPT
Sbjct: 1021 NFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPT 1080
Query: 1081 RSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVY 1140
RSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVY
Sbjct: 1081 RSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVY 1140
Query: 1141 CVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLIPELKD 1200
CVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLIPELKD
Sbjct: 1141 CVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLIPELKD 1200
Query: 1201 ADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAAEKAFEGSPAREL 1260
ADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAAEKAFEGSPAREL
Sbjct: 1201 ADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAAEKAFEGSPAREL 1260
Query: 1261 DVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSL 1320
DVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSL
Sbjct: 1261 DVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSL 1320
Query: 1321 SAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDDSRAAQDG 1380
SAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDDSRAAQDG
Sbjct: 1321 SAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDDSRAAQDG 1380
Query: 1381 SDPDKSPWPVSSALTARLRRLVTVYQRCNRKELCRPEILGPGNQGYWVQEEMFRRTSEMD 1440
SDPDKSPWPVSSALTARLRRLVTVYQRCNRKELCRPEILGPGNQGYWVQEEMFRRTSEMD
Sbjct: 1381 SDPDKSPWPVSSALTARLRRLVTVYQRCNRKELCRPEILGPGNQGYWVQEEMFRRTSEMD 1440
Query: 1441 LINKEAQKRWTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFY 1500
LINKEAQKRWTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFY
Sbjct: 1441 LINKEAQKRWTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFY 1500
Query: 1501 SFVAMCRNVCRLPTWKDGGPPDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHE 1560
SFVAMCRNVCRLPTWKDGGPPDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHE
Sbjct: 1501 SFVAMCRNVCRLPTWKDGGPPDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHE 1560
Query: 1561 RLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKR 1620
RLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKR
Sbjct: 1561 RLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKR 1620
Query: 1621 SGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDVTCE 1680
SGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDVTCE
Sbjct: 1621 SGTQAPGNLCCLYQTNSKLYESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDVTCE 1680
Query: 1681 NFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVITISIS 1740
NFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVITISIS
Sbjct: 1681 NFISKVQDVISINHDESLLPESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVITISIS 1740
Query: 1741 KDGNCQSGGPEAEIASGPTFMGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPE 1800
KDGNCQSGGPEAEIASGPTFMGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPE
Sbjct: 1741 KDGNCQSGGPEAEIASGPTFMGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPE 1800
Query: 1801 NIGQLEAKCLASPSLNPGNESGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILS 1860
NIGQLEAKCLASPSLNPGNESGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILS
Sbjct: 1801 NIGQLEAKCLASPSLNPGNESGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILS 1860
Query: 1861 QNHSDEEEEEEENEEENLAMAVGMGERPEVLHLTEPTTNISREKNQGFQDETKKGSLEVA 1920
QNHSDEEEEEEENEEENLAMAVGMGERPEVLHLTEPTTNISREKNQGFQDETKKGSLEVA
Sbjct: 1861 QNHSDEEEEEEENEEENLAMAVGMGERPEVLHLTEPTTNISREKNQGFQDETKKGSLEVA 1920
Query: 1921 NQTPGLQRAFPAPAACQCHCKHMERWMHGLENDEFEIEKPKAYIPDLFKSKTNTIAMEGE 1980
NQTPGLQRAFPAPAACQCHCKHMERWMHGLENDEFEIEKPKAYIPDLFKSKTNTIAMEGE
Sbjct: 1921 NQTPGLQRAFPAPAACQCHCKHMERWMHGLENDEFEIEKPKAYIPDLFKSKTNTIAMEGE 1980
Query: 1981 PTAIPSQPFKVKHELLKEPWKESAEGQNVFPTYPLEGSELKSEDMDFENKDDYDRDGNCH 2040
PTAIPSQPFKVKHELLKEPWKESAEGQNVFPTYPLEGSELKSEDMDFENKDDYDRDGNCH
Sbjct: 1981 PTAIPSQPFKVKHELLKEPWKESAEGQNVFPTYPLEGSELKSEDMDFENKDDYDRDGNCH 2040
Query: 2041 SQDYPGKYSEEESKSSTSGITGDIGDELQEARAPTIAQLLQEKTLYSFSEWPKDRVIINR 2100
SQDYPGKYSEEESKSSTSGITGDIGDELQEARAPTIAQLLQEKTLYSFSEWPKDRVIINR
Sbjct: 2041 SQDYPGKYSEEESKSSTSGITGDIGDELQEARAPTIAQLLQEKTLYSFSEWPKDRVIINR 2100
Query: 2101 LDNICHVVLKGKWPSSQQYEPSGTLPTPVLTSSAGSRTSLSEPEAAEHSFSNGAALAAQI 2160
LDNICHVVLKGKWPSSQQYEPSGTLPTPVLTSSAGSRTSLSEPEAAEHSFSNGAALAAQI
Sbjct: 2101 LDNICHVVLKGKWPSSQQYEPSGTLPTPVLTSSAGSRTSLSEPEAAEHSFSNGAALAAQI 2160
Query: 2161 HKESFLAPVFTKDEQKHRRPYEFEVERDAKARGLEQFSATHGHTPIILNGWHGESAMDLS 2220
HKESFLAPVFTKDEQKHRRPYEFEVERDAKARGLEQFSATHGHTPIILNGWHGESAMDLS
Sbjct: 2161 HKESFLAPVFTKDEQKHRRPYEFEVERDAKARGLEQFSATHGHTPIILNGWHGESAMDLS 2220
Query: 2221 CSSEGSPGATSPFPVSASTPKIGAISSLQGALGMDLSGILQAGLIHPVTGQIVNGSLRRD 2280
CSSEGSPGATSPFPVSASTPKIGAISSLQGALGMDLSGILQAGLIHPVTGQIVNGSLRRD
Sbjct: 2221 CSSEGSPGATSPFPVSASTPKIGAISSLQGALGMDLSGILQAGLIHPVTGQIVNGSLRRD 2280
Query: 2281 DAATRRRRGRRKHVEGGMDLIFLKEQTLQAGILEVHEDPGQATLSTTHPEGPGPATSAPE 2340
DAATRRRRGRRKHVEGGMDLIFLKEQTLQAGILEVHEDPGQATLSTTHPEGPGPATSAPE
Sbjct: 2281 DAATRRRRGRRKHVEGGMDLIFLKEQTLQAGILEVHEDPGQATLSTTHPEGPGPATSAPE 2340
Query: 2341 PATAASSQAEKSIPSKSLLDWLRQQADYSLEVPGFGANFSDKPKQRRPRCKEPGKLDVSS 2400
PATAASSQAEKSIPSKSLLDWLRQQADYSLEVPGFGANFSDKPKQRRPRCKEPGKLDVSS
Sbjct: 2341 PATAASSQAEKSIPSKSLLDWLRQQADYSLEVPGFGANFSDKPKQRRPRCKEPGKLDVSS 2400
Query: 2401 LSGEERVPAIPKEPGLRGFLPENKFNHTLAEPILRDTGPRRRGRRPRSELLKAPSIVADS 2460
LSGEERVPAIPKEPGLRGFLPENKFNHTLAEPILRDTGPRRRGRRPRSELLKAPSIVADS
Sbjct: 2401 LSGEERVPAIPKEPGLRGFLPENKFNHTLAEPILRDTGPRRRGRRPRSELLKAPSIVADS 2460
Query: 2461 PSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPLTGLVGFPAGFATMPTGEEVKSTLSMLPM 2520
PSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPLTGLVGFPAGFATMPTGEEVKSTLSMLPM
Sbjct: 2461 PSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPLTGLVGFPAGFATMPTGEEVKSTLSMLPM 2520
Query: 2521 MLPGMAAVPQMFGVGGLLSPPMATTCTSTAPASLSSTTKSGTAVTEKTAEDKPSSHDVKT 2580
MLPGMAAVPQMFGVGGLLSPPMATTCTSTAPASLSSTTKSGTAVTEKTAEDKPSSHDVKT
Sbjct: 2521 MLPGMAAVPQMFGVGGLLSPPMATTCTSTAPASLSSTTKSGTAVTEKTAEDKPSSHDVKT 2580
Query: 2581 DTLAEDKPGPGPFSDQSEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQ 2640
DTLAEDKPGPGPFSDQSEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQ
Sbjct: 2581 DTLAEDKPGPGPFSDQSEPAITTSSPVAFNPFLIPGVSPGLIYPSMFLSPGMGMALPAMQ 2640
Query: 2641 QARHSEIVGLESQKRKKKKTKGDNPNSHPEPAPSCEREPSGDENCAEPSAPLPAEREHGA 2700
QARHSEIVGLESQKRKKKKTKGDNPNSHPEPAPSCEREPSGDENCAEPSAPLPAEREHGA
Sbjct: 2641 QARHSEIVGLESQKRKKKKTKGDNPNSHPEPAPSCEREPSGDENCAEPSAPLPAEREHGA 2700
Query: 2701 QAGEGALKDSNNDTN 2715
QAGEGALKDSNNDTN
Sbjct: 2701 QAGEGALKDSNNDTN 2715
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 2026 bits (5250), Expect = 0.0
Identities = 1018/1595 (63%), Positives = 1241/1595 (77%), Gaps = 47/1595 (2%)
Query: 83 EDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEH 142
+D GG ++ + G QE K ++ + K K++PKEPKEP++ KEPK+ K
Sbjct: 617 KDDFPGGVDNQELNRNSLDGSQE-----EKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTP 671
Query: 143 KEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVE--KKKKGK 200
K PK KE KEK++ T + S+K+S ++ + KKK K
Sbjct: 672 KAPKIP---------------KEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNK 716
Query: 201 RKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRKYNEDLDFKVVDDDG 260
K+E + E+ +LD+ P P E E QKRRS RQVKR++Y EDL+FK+ D++
Sbjct: 717 GKTEGS-ENSDLDK---TPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEA 772
Query: 261 ETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYV 320
+ G S S S + +E + + ++EKI++S++V++ ++E FYV
Sbjct: 773 DDADAAGRDSPSNTSQS----EQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYV 828
Query: 321 KYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI 380
KY+NFSYLHC+WA++E+LEKD RI QKIKRF+ KQ Q K + +E +++LFNPDYVEVDRI
Sbjct: 829 KYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFL-SEIEDELFNPDYVEVDRI 887
Query: 381 LEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVE 439
++ A + D + GE VTHYLVKWCSLPYE+STWE +D+D AK++EFE L PE + VE
Sbjct: 888 MDFARSTD-DRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVE 946
Query: 440 RPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITF 499
RP +D W+K E SREYKN+N+LREYQLEG+NWLLFNWYN +NCILADEMGLGKTIQSITF
Sbjct: 947 RPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITF 1006
Query: 500 LSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDA 559
L EI+L+GIHGPFL+IAPLSTI NWEREFRTWTE+N +VYHGSQ SR+ IQ YEM ++D
Sbjct: 1007 LYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDP 1066
Query: 560 QGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMAL 619
QG + G +KFH +ITTFEMIL DCPEL+ I W CV+IDEAHRLKNRNCKLLEGLK+M L
Sbjct: 1067 QGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDL 1126
Query: 620 EHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMM 679
EHKVLLTGTPLQN+VEELFSLL+FLEPS+FPSET F++EFGDLKTEEQV+KLQ+ILKPMM
Sbjct: 1127 EHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMM 1186
Query: 680 LRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMM 739
LRRLK+DVEKNLAPK+ETIIEVELTNIQKKYYRAILEKNF+FL+KG Q N+PNL+NTMM
Sbjct: 1187 LRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMM 1246
Query: 740 ELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGG 799
ELRKCCNHPYLINGAEEKILE+F++TH+ ++PDFQLQAMIQAAGKLVLIDKLLPKL AGG
Sbjct: 1247 ELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGG 1306
Query: 800 HKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCT 859
H+VLIFSQMVRCLDILEDYLIQRRY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCT
Sbjct: 1307 HRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1366
Query: 860 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFD 919
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK+VK+YRLITRNSYEREMFD
Sbjct: 1367 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFD 1426
Query: 920 KASLKLGLDKAVLQDIN-RKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEED 978
KASLKLGLDKAVLQ ++ R+ TNGVQQLSK E+EDLLRKGAYGALMDEEDEGSKFCEED
Sbjct: 1427 KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEED 1486
Query: 979 IDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKN 1038
IDQIL RRTHTITI+SEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAK AELD +A N
Sbjct: 1487 IDQILLRRTHTITIESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALN 1546
Query: 1039 EKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERP-TRSRRLNDKARRYLRAEC 1097
+ +LVID PRVRKQT+ Y++ +EDELMEFS+L+SDS+E+P + RR DK++ Y R+EC
Sbjct: 1547 GRNNLVIDTPRVRKQTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSEC 1606
Query: 1098 FRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWE 1157
FRVEKNLL++GWGRW DIL+HGR+K L E+D+E ICR +LVYC+ HYKGDE IKSFIW+
Sbjct: 1607 FRVEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWD 1666
Query: 1158 LITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDG 1217
LITPT DGQ + L NHSGLSAPVPRGRKGKK K Q P ++DADWLA+CNP+ + +D
Sbjct: 1667 LITPTADGQTRALVNHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDS 1726
Query: 1218 YKKHLKQHCNKVLLRVRMLYYLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWW 1277
YKKHLK HCNKVLLRVRMLYYL+ E++G+ A+K EG+ + E DV +P+ + E+P DWW
Sbjct: 1727 YKKHLKHHCNKVLLRVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWW 1786
Query: 1278 DAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERG 1337
D EADKSLLIGVFKHGYE+YN+MRADPALCFLE+VGMPD K+++AEQ TD +D + G
Sbjct: 1787 DKEADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGG 1846
Query: 1338 NTDKEDNAEDKVDGLQKQTESSSDGGDGVFSEKKDDS-------RAAQDGSDPDKSPWPV 1390
D+ED + + + + D SE K++S + ++ ++ + WP
Sbjct: 1847 EFDREDE-DPEYKPTRTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPN 1905
Query: 1391 SSALTARLRRLVTVYQRCNRKELCRPE-ILGPGNQGYWVQEEMFRRTSEMDLINKEAQKR 1449
+S LT RLRRL+T YQR +++ R E ++ + +EE+ +E + I E +++
Sbjct: 1906 TSTLTTRLRRLITAYQRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQK 1965
Query: 1450 WTRREQADFYRTVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNV 1509
WTRRE+ADFYR VS+FGV++D K+ FDW QFR +RLDKKSDESLE+YF FVAMCR V
Sbjct: 1966 WTRREEADFYRVVSTFGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRV 2025
Query: 1510 CRLPTWKDGGPPDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLQLCRPSL 1569
CR+P D PPD + +EPITEERA+RTLYRIELLRK+REQVL PQL ERL+LC+PSL
Sbjct: 2026 CRMPVKPDDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSL 2085
Query: 1570 YLPVWWECGKHDRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNL 1629
LP WWECG+HDRDLL+G AKHG++RTD +I+NDP+LSFLDA++N+AQ++ +G + N
Sbjct: 2086 DLPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNP 2145
Query: 1630 CCLYQTNSKLYESLTYSQMSRTSESLE---NEPEN 1661
+ + S + Q R E E EPEN
Sbjct: 2146 LAVGFVQTPPVISSAHIQDERVLEQAEGKVEEPEN 2180
Score = 348 bits (892), Expect = 5e-95
Identities = 250/736 (33%), Positives = 371/736 (50%), Gaps = 74/736 (10%)
Query: 2018 SELKSEDMDFENKDDYDRDGNCHSQDYP----GKYSEEESKSSTSGITGDIGDEL-QEAR 2072
SE SE+ + E +D D+ + GK +EES +S S + D E
Sbjct: 2233 SEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMEDG 2292
Query: 2073 APTIAQLLQEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSS--QQYEPSGTLP--TP 2128
P++AQLL E+T ++FS WPKDRV+INRLDNIC VLKGKWP + Q ++ G +P TP
Sbjct: 2293 DPSVAQLLHERT-FAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMFDFQGLIPGYTP 2351
Query: 2129 VLTSSAGSRTSLSEPE---AAEHSFSNGAALAAQIHKESFLAPVFTKDEQKHRRPYEFEV 2185
S + S +E A S S + Q+ KE L + ++ RR E E
Sbjct: 2352 TTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQRRRRRRKIEIEA 2411
Query: 2186 ERDAKARGLEQFSATHGHTPIILNGWHGESAMDLSCSSEGSPGATSPFPVSASTPKIGAI 2245
ER AK R L + A + ++ E +DLS +S + +TS F +S + +
Sbjct: 2412 ERAAKRRNLMEMVAQLRESQVVSENGQ-EKVVDLSKASREATSSTSNFSSLSSKFILPNV 2470
Query: 2246 SSLQGALGMDLSGILQAGLIHPVTGQIVNGSLRRDDAATRRRRGRRKHVEGGMDLIFL-- 2303
S+ +LQAGL T ++NGSL + +RRRGRRK+VE G+DL+F+
Sbjct: 2471 STPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE-GLDLLFMSH 2529
Query: 2304 KEQTLQAGILEVHE--DPGQATLSTTHPEGPG---PATSAPEPATAASSQ--AEKSIPSK 2356
K +L A EV + + T T + PG P T P ++ E + +K
Sbjct: 2530 KRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNK 2589
Query: 2357 SLLDWLRQQADYSLEVPGFGANFSD-------KPKQRRPRCKEPGKLDVSSLSGEERVPA 2409
L++WL+ Y++++P + +D KPKQ+R RC+ P KLD+++L+GEERVP
Sbjct: 2590 DLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTGEERVPV 2649
Query: 2410 IPKEPGLR-----------------------------------GFLPENKFNHTLAEPIL 2434
+ K G + GF+PE+ F+ L P++
Sbjct: 2650 VNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVV 2709
Query: 2435 RDTGPRRRGRRPRSELLKAPSIVA--DSPSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPL 2492
R G RRGRRP+SE+ +A + A S SG+ PL +N L AGMDL LQN++N+ + L
Sbjct: 2710 RGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQNLQNLQSLQL 2769
Query: 2493 TGLVGFPAGFATMPT-GEEVKSTLSMLPMMLPGMAAVPQMFGVGGLLSPPMATTCTSTAP 2551
GL+GFP G AT T G + K+ ++LP+MLPGMA +P +FG+GGLL+ P++ +T
Sbjct: 2770 AGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPLSAATGNTTT 2829
Query: 2552 ASLSSTTKSGTAVTEKTA---EDKPSSHDVKTDTLAEDKPGPGPFSDQSEPAITTSSPVA 2608
AS + T+ E+ ED+ + TD ++ G + PA S+P+A
Sbjct: 2830 ASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAPAGLPSNPLA 2889
Query: 2609 FNPFLIPGVSPGLIYPSMFLSPGM-GMALPAMQQARHSEIVGLESQKRKKKKTKGDNPNS 2667
FNPFL+ ++PGL YPSMFL PG+ G+ LP + S+++ K +G P
Sbjct: 2890 FNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAADKAEG-GPFK 2948
Query: 2668 HPEPAPSCEREPSGDE 2683
E + E S D+
Sbjct: 2949 DGETLEGSDAEESLDK 2964
Score = 34.7 bits (78), Expect = 1.3
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 18/151 (11%)
Query: 125 KEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKA 184
+EP+ P AKE + KE +E + DG+ K K + K + + A T S+
Sbjct: 2176 EEPENPA-AKEKCEGKEEEE--ETDGSGKESKQECEAEASSVKNELKGVEVGADTGSKSI 2232
Query: 185 SKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKR 244
S++ E+K + KSE ES + + G + EES S + +
Sbjct: 2233 SEKGSEEDEEEKLEDDDKSE---ESSQPEAGAVSRGKNFDEESNASMSTAR--------- 2280
Query: 245 RKYNEDLDFKVVDDDGETIAVLGAGRTSALS 275
+E D ++D ++A L RT A S
Sbjct: 2281 ---DETRDGFYMEDGDPSVAQLLHERTFAFS 2308
Score = 33.5 bits (75), Expect = 2.9
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 18/156 (11%)
Query: 65 EEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREP 124
E++A T P+ +S KK+ K G EG+ D+ P P P
Sbjct: 682 EKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNK--GKTEGSENSDLDKTPPP--SPPP 737
Query: 125 KEPKEP----RKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
+E ++P R++ K K + E + + + +A+G R + ++++
Sbjct: 738 EEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAG-------RDSPSNTSQSE 790
Query: 181 SRKASKEQGPTPVEK--KKKGKRKSETTVESLELDQ 214
+++ +GP VEK + +K + + E +E+++
Sbjct: 791 QQESVDAEGPV-VEKIMSSRSVKKQKESGEEVEIEE 825
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 1918 bits (4969), Expect = 0.0
Identities = 1028/1827 (56%), Positives = 1270/1827 (69%), Gaps = 110/1827 (6%)
Query: 93 KKKRKKKEP-GDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGA 151
KK+RKK E QE A + + K K + E P+ P + E KE +K G
Sbjct: 511 KKQRKKVESESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPTASVEGKE--EKKGR 568
Query: 152 KKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLE 211
+ KP++ K++K+ ++C+ +TK K G KK KRK+E++ E +
Sbjct: 569 RMKSKPKD----KDSKKTKTCSKLKEKTKIGKLIITLG-------KKQKRKNESSDEISD 617
Query: 212 LDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRT 271
+Q P+ + + DSQKRRS RQ+KR+KY ED++ K +++ + +
Sbjct: 618 AEQ--------MPQHTLKDQDSQKRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKIKKNSA 669
Query: 272 SALSASTLAWQAEEPPEDDANIIEKILASKTVQ-EVHPGEPPFDLELFYVKYRNFSYLHC 330
L E P E+DA I++KIL+S+TV+ E+ PG D E F+VKY+N+SYLHC
Sbjct: 670 PLPGEQPLQLFVENPSEEDAAIVDKILSSRTVKKEISPGVM-IDTEEFFVKYKNYSYLHC 728
Query: 331 KWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAE 390
+WAT E+L KD RI QKIKRF+ +QAQ H F + +E+ FNPDYVEVDR+LEV+ +D +
Sbjct: 729 EWATEEQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKD 788
Query: 391 TGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVERPASDSWQKL 449
TGE V +YLVKWCSLPYE+STWEL+EDVD AK++EFE LQ P+ + ++RP S+ W+K+
Sbjct: 789 TGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKI 848
Query: 450 EKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIH 509
++SR+YKN NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKTIQSITFL EI L GI
Sbjct: 849 DQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIR 908
Query: 510 GPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFK 569
GPFLIIAPLSTI NWEREFRTWT++N +VYHGS ISRQMIQQYEM +RD+QG + G ++
Sbjct: 909 GPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 968
Query: 570 FHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTP 629
F +ITTFEMIL C EL I W CVIIDEAHRLKN+NCKLLEGLKLM LEHKVLLTGTP
Sbjct: 969 FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
Query: 630 LQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEK 689
LQN+VEELFSLL+FLEP +FPSE+ F++EFGDLKTEEQV+KLQ+ILKPMMLRRLK+DVEK
Sbjct: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK 1088
Query: 690 NLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPY 749
LAPK+ETIIEVELTNIQKKYYRAILEKNFSFL+KGA Q N+PNL+NTMMELRKCCNHPY
Sbjct: 1089 KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPY 1148
Query: 750 LINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMV 809
LI GAEEKIL +FR T++P A DF LQAMIQ+AGKLVLIDKLLPK+ AGGHKVLIFSQMV
Sbjct: 1149 LIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV 1208
Query: 810 RCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLT 869
RCLDILEDYLI +RY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCTRAGGLGINLT
Sbjct: 1209 RCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 1268
Query: 870 AADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
AADTCIIFDSDWNPQNDLQAQARCHRIGQ+KAVKVYRL+TRNSYEREMFD+ASLKLGLDK
Sbjct: 1269 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK 1328
Query: 930 AVLQDIN-RKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTH 988
AVLQ ++ R+ G+QQLSK E+EDLLR+GAYGA+M+EEDEGSKFCEEDIDQIL RRT
Sbjct: 1329 AVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTK 1388
Query: 989 TITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKESLVIDRP 1048
TITI+SEG+GSTFAKASFVASGNRTDISLDDPNFWQKWAK AE+D EA + + SLVID P
Sbjct: 1389 TITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGRNSLVIDTP 1448
Query: 1049 RVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLNDKARRYLRAECFRVEKNLLIFG 1108
R+RKQT+ +++ +DEL E SE +S+ DE+P + RR D++ Y R ECFRVEKNLL++G
Sbjct: 1449 RIRKQTRPFSA-TKDELAELSEAESEGDEKP-KLRRPCDRSNGYGRTECFRVEKNLLVYG 1506
Query: 1109 WGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDGQAQ 1168
WGRW++IL+HGRFK LNE D+E+ICRALL YC+ HY+GDEKIK FIW+LITPT+DGQ +
Sbjct: 1507 WGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITPTEDGQTR 1566
Query: 1169 TLQNHSGLSAPVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDGYKKHLKQHCNK 1228
LQNH GLSAPVPRGRKGKK K Q +++ A+WL NPE +L D+GYKKH+K HCNK
Sbjct: 1567 ELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHIKHHCNK 1626
Query: 1229 VLLRVRMLYYLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWWDAEADKSLLIG 1288
VLLRVRMLYYLK E++G +K F+G A ++DV +P+ D+ E+P +WWD +ADKSLLIG
Sbjct: 1627 VLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDADKSLLIG 1686
Query: 1289 VFKHGYERYNAMRADPALCFLEKVGMPDEKSLSAEQGVTD---GTSDIPERGNTDK--ED 1343
VFKHGYE+YN +RADPALCFLE+VG PDEK+++AEQ D G + PE +D
Sbjct: 1687 VFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAIFKD 1746
Query: 1344 NAEDKVDGLQKQTESSSDGGDGVFSEKKDDSRAAQDGSDPDKSPWPVSSALTARLRRLVT 1403
+ ED V S GD V + D +G DK WP SALT RLRRL+T
Sbjct: 1747 DIEDDV----------SSPGDLVIA---DGDGQLMEG---DKVYWPTQSALTTRLRRLIT 1790
Query: 1404 VYQRCNRK---ELCRPEILGPGNQGYWVQEEMFRRTSEMDLINKEAQKRWTRREQADFYR 1460
YQR N+ + +P P + + EE I E Q+RWTRRE+ADFYR
Sbjct: 1791 AYQRTNKNRQIQQIQPTFSVPTSVMQPIYEEATLNPKMAAKI--ERQQRWTRREEADFYR 1848
Query: 1461 TVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNVCRLPTWKDGGP 1520
VS+FGVV+D ++ FDWT+FR ++RL KK+D+SLE+Y Y+F++MCR VCRLP+ ++
Sbjct: 1849 VVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVD 1908
Query: 1521 PDTTIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLQLCRPSLYLPVWWECGKH 1580
P+ I+++PITEERA+RTLYRIELLRKVREQ L+ PQL ERL+LC P+ LPVWWECG H
Sbjct: 1909 PN--IFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPH 1966
Query: 1581 DRDLLIGTAKHGLNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNLCCLYQTNSKLY 1640
DRDLLIG AKHG++RTD +I+ DP+LSF+ A RNY+Q K + ++ L YQ
Sbjct: 1967 DRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQV----- 2021
Query: 1641 ESLTYSQMSRTSESLENEPENLVRVESRDDHLSLPDVTCENFISKVQDVISINHDESLLP 1700
+L+ S ++ SLP ++ D I
Sbjct: 2022 -ALSASPLT-----------------------SLP---------RLLDAKGI-------- 2040
Query: 1701 ESLESMMYGKKVLSQEPSSFQESPSTNTESRKDVITISISKDGNCQSGGPEAEIASGPTF 1760
LE M + L +EP S +E ++ E+R + + +S + + G
Sbjct: 2041 -ILEEMKVKSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQATGDQKSGGKCE 2099
Query: 1761 MGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPENIGQLEAKCLASPSLNPGNE 1820
+ N + K G S++ E +S S + +
Sbjct: 2100 TDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHS 2159
Query: 1821 SGFVDMCSLSVCDSKRNLSSDQQLIDLLENKSLESKLILSQNHSDEEEEEEENEEENLAM 1880
S S C S + SS S S S SD +EEE + E M
Sbjct: 2160 RSGSSSSSSSSCSSASSSSSSS-------TSSSSSSSSSSSEESDSDEEEAQKRESTTHM 2212
Query: 1881 AVGMGERPEVLHLTEPTTNISREKNQG 1907
E L T+ T S + N G
Sbjct: 2213 KAYDEESVASLSTTQDETQDSFQMNNG 2239
Score = 233 bits (594), Expect = 2e-60
Identities = 217/767 (28%), Positives = 328/767 (42%), Gaps = 146/767 (19%)
Query: 2018 SELKSEDMDFENKDDYDRDGNCHSQDYPGKYSEEESKSSTSGITGDIGDELQEARA-PTI 2076
S SE+ D + ++ R+ H + Y +EES +S S + D Q P
Sbjct: 2189 SSSSSEESDSDEEEAQKRESTTHMKAY-----DEESVASLSTTQDETQDSFQMNNGTPES 2243
Query: 2077 AQLLQEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSSQQYEPSGTLP---TPVLTSS 2133
A +LQ + + S WPKDRV+INRLD+IC VLKGKWPS+++ + T+ T L S
Sbjct: 2244 AYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYTTKLLDS 2303
Query: 2134 AGSRTSLSEPEAAEHSFSNGAAL------AAQIHKESFLAPVFTKDEQKHRRPYEFEVER 2187
G+ T S+P GA + + Q+ KE L F K +RP++ E
Sbjct: 2304 PGAATEYSDPSVPTPP---GAGVKEEHDQSTQMSKEGGLKLTFQKQGLAQKRPFDGE--- 2357
Query: 2188 DAKARGLEQFSATHGHTPIILNGWHGESAMDLSCSSEGSPGATSPFPVSASTPKIGAISS 2247
A G +Q+ +L +SE TS S P G +S
Sbjct: 2358 -DGALGQQQYLTR---------------LRELQSASE-----TSLVNFPKSIPVSG--TS 2394
Query: 2248 LQGALGMDLSGILQAGLIHPVTGQIVNGSLRRDDAATRRRRGRRKHVEGGMDLIFLKEQT 2307
+Q LG NG + + ++RRGRRK+VEG +D+ F
Sbjct: 2395 IQPTLG-------------------ANGVILDNQPIVKKRRGRRKNVEG-VDIFFFNRNK 2434
Query: 2308 ----LQAGILEVHEDPG-QATLSTTHPEG------PGPATSAPEPATAASSQAEKSIPSK 2356
+ G+ G LS T P+G P P + + A A K K
Sbjct: 2435 PPNHVSLGLTSSQISTGINPALSYTQPQGIPDTESPVPVINLKDGTRLAGDDAPKR---K 2491
Query: 2357 SLLDWLRQQADYSLEVPGFGANFS---DKPKQRRPRCKEPGKLDVSSLSGEERVPAIPKE 2413
L WL++ Y ++ F +PKQ+R RC+ P KLDV+SL+GEERV I +
Sbjct: 2492 DLEKWLKEHPGYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRR 2551
Query: 2414 ----------PGLR-------------------------GFLPENKFNHTLAEPILRDTG 2438
P L+ GFLPE+ + L P++R+
Sbjct: 2552 NARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREE- 2610
Query: 2439 PRRRGRRPRSELLKAPSIV----ADSPSGMGPLFMNGLIAGMDLVGL----QNMRNMPGI 2490
RRGRRP+S + KA + A S SG PL NGL+ G+DL L QN++N+ +
Sbjct: 2611 VSRRGRRPKSGIAKATAAAAAASATSVSG-NPLLANGLLPGVDLTTLQALQQNLQNLQSL 2669
Query: 2491 PLT-GLVGFPAGFATMPTGEEVKSTLSMLPMMLPGMAAVPQMFGVGGLLSPPMATTCTST 2549
+T GL+G P G +P+G E K+ +M PM+L GMA +P + G+GGLL+ P + T
Sbjct: 2670 QVTAGLMGMPTG---LPSGGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKP-TESGTED 2725
Query: 2550 APASLSSTTKSGTAVTEKTAEDKPSSHDVKTDTLAEDKPGPGPFSDQSEPAITTSSPVAF 2609
S S ++ T TE + + + V + P S + ++P+A
Sbjct: 2726 KKGSDSKESEGKTERTESQSSENGGENSVSS--------SPSTSSTAALNTAAAANPLAL 2777
Query: 2610 NPFLIPGVSPGLIYPSMFLSPGMGMALPAMQQARHSEIVGLESQKRKKKKTKGDNPNSH- 2668
NP L+ + +YP M L+PG+ + +P + Q+ ++ S K + +S
Sbjct: 2778 NPLLLSNI----LYPGMLLTPGLNLHIPTLSQSNTFDVQNKNSDLGSSKSVEVKEEDSRI 2833
Query: 2669 --PEPAPSCEREPSGDENCAEPSAPLPAEREHGAQAGEGALKDSNND 2713
E E P + + E S A + + DS+N+
Sbjct: 2834 KDQEDKGGTEPSPLNENSTDEGSEKADASSGSDSTSSSSEDSDSSNE 2880
Score = 36.6 bits (83), Expect = 0.35
Identities = 68/329 (20%), Positives = 131/329 (39%), Gaps = 31/329 (9%)
Query: 41 STDQEEKIEDVASHCLPQKDLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKE 100
S ++EK + S + + A+E PR M+ N S G K +R K +
Sbjct: 519 SESKQEKANRIISEAIAK-----AKERGERNIPRVMSPENFPTASVEGKEEKKGRRMKSK 573
Query: 101 PGDQEGAAKGSKDREPKPKRK-------REPKEPKEPRKAKEPKKAKEHKEPKQKD-GAK 152
P D++ + K + K K K K+ ++ + E A++ + KD ++
Sbjct: 574 PKDKD-SKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQ 632
Query: 153 KARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLEL 212
K R R+ K A++ S K K P P E+ + ++ + ++ +
Sbjct: 633 KRRSNRQIKRKKYAEDIEGKQSEEEVKGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIV 692
Query: 213 DQGLTNPSLRSPEESTESTDSQKRRSGRQVKRRKYNE-----DLDFKVVDDDGETIAVLG 267
D+ L++ +++ D+++ VK + Y+ + +++ D +
Sbjct: 693 DKILSSRTVKKEISPGVMIDTEE----FFVKYKNYSYLHCEWATEEQLLKDKRIQQKIKR 748
Query: 268 AGRTSALSASTLAWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSY 327
A A A EEP D ++++L ++ GEP + + VK+ + Y
Sbjct: 749 FKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEP---VIYYLVKWCSLPY 805
Query: 328 LHCKWATMEELEKDPRIAQKIKRFRNKQA 356
W EL++D +A KI+ F QA
Sbjct: 806 EDSTW----ELKEDVDLA-KIEEFEQLQA 829
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 1916 bits (4963), Expect = 0.0
Identities = 994/1629 (61%), Positives = 1208/1629 (74%), Gaps = 50/1629 (3%)
Query: 52 ASHCLPQKDLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGS 111
AS L + +A E AA P H+G G TG+++ R+ + QE A +
Sbjct: 133 ASSGLSVVKVLSASEVAALSSPASSAPHSG------GKTGMEENRRLEHQKKQEKANRIV 186
Query: 112 KDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRS 171
+ + + + E P+ + + P E ++G KK RK KE K K+S
Sbjct: 187 AEAIARARARGEQNIPRVLNEDELPSVRPE------EEGEKKRRKKSAGERLKEEKPKKS 240
Query: 172 CTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTEST 231
T A++TK + SK TPV KK RK T+ ++ +++ P+ +SP E ES+
Sbjct: 241 KTSGASKTKGK--SKLNTITPVVGKK---RKRNTSSDNSDVE---VMPA-QSPREDEESS 291
Query: 232 DSQKRRSGRQVKRRKYNEDLDFKVVDDDGET-IAVLGAGRTSAL-----------SASTL 279
QKRRS RQVKR+KY EDLD K+ DD+ E + V G + + + ++
Sbjct: 292 -IQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSM 350
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELE 339
+ E P E+DA I++K+L+ + V++ P + E F+VKY+N+SYLHC+WAT+ +LE
Sbjct: 351 QFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLE 410
Query: 340 KDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYL 399
KD RI QK+KRF+ K AQM+H F E DE+ FNPDYVEVDRIL+ +H+ D + GE V +YL
Sbjct: 411 KDKRIHQKLKRFKTKMAQMRHFFHE-DEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYL 469
Query: 400 VKWCSLPYEESTWELEEDVDPAKVKEFESLQVL-PEIKHVERPASDSWQKLEKSREYKNS 458
VKWCSLPYE+STWEL+EDVD K++EF+ +Q PE+K V RP + +W+KLE S EYKN
Sbjct: 470 VKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNR 529
Query: 459 NQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPL 518
NQLREYQLEG+NWLLFNWYNR+NCILADEMGLGKTIQSI FL E++ GIHGPFL+IAPL
Sbjct: 530 NQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPL 589
Query: 519 STITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFE 578
STITNWEREF TWTEMN IVYHGS SRQMIQQYEM +D++G + G +KF +ITTFE
Sbjct: 590 STITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFE 649
Query: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
MIL+DCPEL++I W CVIIDEAHRLKNRNCKLL+ LK M LEHKVLLTGTPLQN+VEELF
Sbjct: 650 MILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELF 709
Query: 639 SLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETI 698
SLL+FLEPSQFPSE+ FL++FGDLKTEEQV+KLQ+ILKPMMLRRLK+DVEKNLAPKQETI
Sbjct: 710 SLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETI 769
Query: 699 IEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKI 758
IEVELTNIQKKYYRAILEKNFSFL+KGA NMPNL+NTMMELRKCCNHPYLINGAEEKI
Sbjct: 770 IEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKI 829
Query: 759 LEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDY 818
L +FR+ DF LQAM+++AGKLVLIDKLLPKL AGGHKVLIFSQMVRCLDILEDY
Sbjct: 830 LTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 889
Query: 819 LIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 878
LIQRRY YERIDGRVRGNLRQAAIDRF KPDSDRFVFLLCTRAGGLGINLTAADTCIIFD
Sbjct: 890 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 949
Query: 879 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDIN-R 937
SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQ ++ R
Sbjct: 950 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009
Query: 938 KGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGK 997
G G+QQ SK E+EDLLRKGAY A+M+E+DEGSKFCEEDIDQIL RRT TITI+SEGK
Sbjct: 1010 DGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGK 1069
Query: 998 GSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHY 1057
GSTFAKASFVAS NRTDISLDDPNFWQKWAK A+LD + N K +LVID PRVRKQT+H+
Sbjct: 1070 GSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF 1129
Query: 1058 NSFEEDELMEFSELDSDSDERPTRSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILT 1117
++ ++D+L+EFS+L+S+ DERP RSRR +D+ Y R +CFRVEK+LL++GWGRW+DIL+
Sbjct: 1130 STLKDDDLVEFSDLESEDDERP-RSRR-HDRHHAYGRTDCFRVEKHLLVYGWGRWRDILS 1187
Query: 1118 HGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLS 1177
HGRFK + E+D+E ICRA+LVYC+ HY+GDE IK FIW+LI+P ++G+ + LQNHSGLS
Sbjct: 1188 HGRFKRRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLS 1247
Query: 1178 APVPRGRKGKKTKNQLLIPELKDADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLY 1237
PVPRGRKGKK K+Q ++ ADW+ NP+ + D+ YKKHLK CNKVLLRVRMLY
Sbjct: 1248 IPVPRGRKGKKVKSQSTF-DIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLY 1306
Query: 1238 YLKAEILGEAAEKAFEGSPARELDVPLPDIDYMEIPVDWWDAEADKSLLIGVFKHGYERY 1297
YL+ E++G+ AEK G+ A E+D+ P +D +E+P WWD+EADKSLLIGVFKHGYE+Y
Sbjct: 1307 YLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKY 1366
Query: 1298 NAMRADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERGNTDKEDNAEDKVDGLQKQTE 1357
N MRADPALCFLEK G PD+K+++AE V D SDI E + DK D + + LQ +
Sbjct: 1367 NTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDIVEGVDFDK-DCEDPEYKPLQGPPK 1425
Query: 1358 SSSDGGDGVFSEKKD----DSRAAQDGSDPDKSPWPVSSALTARLRRLVTVYQRCNRKEL 1413
D GD + ++ D AQ P WP SALTARLRRLVT YQR ++E
Sbjct: 1426 DQDDEGDPLMMMDEEISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQ 1485
Query: 1414 CRPEILGPGNQGYWVQEEMFRRTSEMDLINKEAQKRWTRREQADFYRTVSSFGVVYDQEK 1473
+ E G++ E F+ ++ +E Q+RWTRREQ DFYR VS+FGV YD +
Sbjct: 1486 MKIEAAERGDRRRRRCEAAFKL---KEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDT 1542
Query: 1474 KTFDWTQFRIISRLDKKSDESLEQYFYSFVAMCRNVCRLPTWKDGGPPDTTIYVEPITEE 1533
F W +FR +RLDKK+DESL +YF+ FVAMCR VCRLP PPD +++EPITEE
Sbjct: 1543 MQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEE 1602
Query: 1534 RAARTLYRIELLRKVREQVLKCPQLHERLQLCR-PSLYLPVWWECGKHDRDLLIGTAKHG 1592
RA+RTLYRIELLR++REQVL P L +RL LC+ P LP WWE +HD +LL G A+HG
Sbjct: 1603 RASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHG 1662
Query: 1593 LNRTDCYIMNDPQLSFLDAYRNYAQHKRSGTQAPGNLCCLYQTNSKLYESLTYSQMS-RT 1651
+++TDC IM DP SFL A NY Q+ ++G AP C + Y S T S + R
Sbjct: 1663 VSQTDCNIMQDPDFSFLAARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRP 1722
Query: 1652 SESLENEPE 1660
+E PE
Sbjct: 1723 DAPVEKSPE 1731
Score = 60.1 bits (144), Expect = 3e-08
Identities = 73/278 (26%), Positives = 110/278 (39%), Gaps = 47/278 (16%)
Query: 1927 QRAFPAPAACQC-----HCKHMERWMHGLE-NDEFEIEK-PKAYIPDLFKSKTNTIAMEG 1979
Q PAP+ +C H ++ R L + +EK P+ + ++ T+ +E
Sbjct: 1690 QAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSLESLTLKLEH 1749
Query: 1980 EPTAIPSQPFKVKHELLKEPWKESAEGQNVFPTYPLEGSELKSEDMDFE----------- 2028
E A S+P +E+ P + P LE + ++D
Sbjct: 1750 EVVA-RSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSS 1808
Query: 2029 --------NKDDYDRDGNCHSQDYPGKYSEEESKSSTSGITGDIGDELQEARAPTIAQLL 2080
++ + +++ Q Y EE S T G +E E P + LL
Sbjct: 1809 SSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDG-FPNEDGEQMTPELL-LL 1866
Query: 2081 QEKTLYSFSEWPKDRVIINRLDNICHVVLKGKWPSSQQYEPSGT----------LPTPVL 2130
QE+ SEWPKDRV+INR+D +C VL GKWPSS++ + T L +P L
Sbjct: 1867 QERQ--RASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLDSPSL 1924
Query: 2131 T------SSAGSRTSLSEPEAAEHSFSNGAALAAQIHK 2162
T S + S S AE S + AAQ K
Sbjct: 1925 TPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTK 1962
Score = 47.8 bits (112), Expect = 2e-04
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 2361 WLRQQADYSLEVPGFGANFSDKPKQRRPRCKEPGKLDVSSLSGEERVPAIPKEPGLRGFL 2420
WL+ +++++ P F A D+ KQ+ RCK+ K +++ L G E V G +G
Sbjct: 2061 WLQGHPEFAVD-PRFLAYMEDRRKQKWQRCKKNNKAELNCL-GMEPVQTANSRNGKKGHH 2118
Query: 2421 PENKFNHTLAEPILRDTGPRRRGRRPRSELLKAPSIVADSPSG 2463
E FN L PI ++ ++R RR R +L K +++ +G
Sbjct: 2119 TETVFNRVLPGPIAPESS-KKRARRMRPDLSKMMALMQGGSTG 2160
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 533 bits (1373), Expect = e-151
Identities = 377/1133 (33%), Positives = 575/1133 (50%), Gaps = 150/1133 (13%)
Query: 64 AEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEP-GDQEGAAKGSKDREPKPKRKR 122
+EE + + + S G + G G+ + E + E + GSK + P+ K
Sbjct: 25 SEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKE 84
Query: 123 EPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSR 182
+P KE R A K +E+ + + ++R+ KE S + S R R
Sbjct: 85 KPASKKE-RIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQR 143
Query: 183 KASK-------------EQGPT----PVEKKKKGKRK--SETTVESLELDQGLTNPSLRS 223
+ K EQG + P +KK K +R T + Q T R
Sbjct: 144 QLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRK 203
Query: 224 PEESTESTDSQKRRSGRQVKRR-----KYNEDLDFKVVDDDGETIAVLGAGRTSALSAST 278
++S++ D RQ +RR Y ED DF+ DD I + G G
Sbjct: 204 KQDSSDEDDDDDEAPKRQTRRRAAKNVSYKEDDDFETDSDD--LIEMTGEG--------- 252
Query: 279 LAWQAEEPPEDDANIIEKIL-----------ASKTVQEVHPGEPP---FDLEL------F 318
+ +D++ IEK+L AS TV + P FD E +
Sbjct: 253 -----VDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDTEKDEGEIQY 307
Query: 319 YVKYRNFSYLHCKWATMEELEKDP-RIAQKIKRFRNKQAQMKHIF---TEPDEDLFN--- 371
+K++ +SY+H W + E L++ + +K++ F+ K+ ++K + D + FN
Sbjct: 308 LIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQ 367
Query: 372 -------PDYVEVDRILEV-------------AHTKDAETGEEVTHYLVKWCSLPYEEST 411
Y V+R++ V AH++ E YL KW LPY E +
Sbjct: 368 ELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNE-PEYLCKWMGLPYSECS 426
Query: 412 WELEEDVDPAKVKEFESLQVLPEIKHVERPASDSWQK------LEKSREYKNSN--QLRE 463
WE E + +S K + + ++ L+K Y +LR+
Sbjct: 427 WEDEALIGKKFQNCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRD 486
Query: 464 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-IHGPFLIIAPLSTIT 522
YQLEG+NWL +W + ILADEMGLGKTIQ+I+FLS +F + ++GPFLI+ PLST+T
Sbjct: 487 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 523 NWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMIL 581
+W+REF W E+N +VY G +SR I++YE ++ + KF+ +ITT+E++L
Sbjct: 547 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKR------LKFNALITTYEILL 600
Query: 582 ADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLL 641
D L I+W+ + +DEAHRLKN + L + L H++L+TGTPLQNS++EL+SLL
Sbjct: 601 KDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLL 660
Query: 642 NFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEV 701
+F+ P +F F E+ G + E + L +L+P +LRR+K DVEK+L K E I+ V
Sbjct: 661 HFIMPEKFEFWEDFEEDHGKGR-ENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRV 719
Query: 702 ELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILED 761
E++ +QK+YY+ IL +N+ L KG + + +N +MEL+KCCNH YLI EE E+
Sbjct: 720 EMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKCCNHCYLIKPPEENEREN 778
Query: 762 FRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQ 821
++ L ++I+++GKL+L+DKLL +L G++VLIFSQMVR LDIL +YL
Sbjct: 779 GQEI---------LLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 829
Query: 822 RRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 881
+ Y ++R+DG ++G +R+ A+D F S+ F FLL TRAGGLGINL +ADT +IFDSDW
Sbjct: 830 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 889
Query: 882 NPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG-- 939
NPQNDLQAQAR HRIGQ K V +YRL+T+ + E E+ ++A K+ LD V+Q ++ G
Sbjct: 890 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT 949
Query: 940 ------GTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQ----RRTHT 989
G + +K E+ +L+ GA + E E S+ E DID+IL+ R
Sbjct: 950 ILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEV 1009
Query: 990 ITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKESL------ 1043
T ++ S F A+F + ++ + P+ + W +I + K E+E
Sbjct: 1010 STSATDELLSQFKVANFATMEDEEELE-ERPH--KDWDEIIPEEQRKKVEEEERQKELEE 1066
Query: 1044 VIDRPRVRKQTKHYNSFEED------------ELMEFSELDSDSDERPTRSRR 1084
+ PR+R TK + + D E DSD D++P R R
Sbjct: 1067 IYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRGR 1119
Score = 46.6 bits (109), Expect = 3e-04
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 42 TDQEEKIED----VASHCLPQ-KDLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKR 96
TD E K+ D V + PQ K L T + L + G+E G G + K
Sbjct: 1286 TDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRK------GLEKKGAVTGGEEAKL 1339
Query: 97 KKKEPG-----------DQEGAAKGSKDREPKPKRKREPKEP---KEPRKAKEPKKAKEH 142
KK++P ++ G S P + E K+ K P K K+ KK +
Sbjct: 1340 KKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKE 1399
Query: 143 KEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPV 193
+ KQ K +E +K+ KEK D+ + +KS+++ QGP +
Sbjct: 1400 NKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRS---QGPVHI 1447
Score = 38.9 bits (89), Expect = 0.070
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 112 KDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRS 171
++ E +P + + P+E RK K +E +QK+ + PR S TK+A+ S
Sbjct: 1033 EELEERPHKDWDEIIPEEQRK-------KVEEEERQKELEEIYMLPRIRSSTKKAQTNDS 1085
Query: 172 CTDSAARTKSRKASKEQGPTP-VEKKKKGKRKSETTVESLELDQGLTNPSLR 222
+D+ ++ +++++S + T + KK KR+ +L +G T+ +R
Sbjct: 1086 DSDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIR 1137
Score = 38.9 bits (89), Expect = 0.070
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 103 DQEGAAKGSKD---REPKPKRKREPKEPK----------EPRKAKEPKKAKEHKEP-KQK 148
+++GA G ++ ++ KP+ K+E K P+ PR + P + E K+ +K
Sbjct: 1326 EKKGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEK 1385
Query: 149 DGAKKARKPREASGTKEAKEKR-SCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTV 207
KK +K +E KE KEK+ S K RK SK++ P K KS+ +
Sbjct: 1386 SPMKKKQKKKE---NKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQ 1442
Query: 208 ESLELDQG 215
+ + G
Sbjct: 1443 GPVHITAG 1450
Score = 37.7 bits (86), Expect = 0.16
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 1277 WDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKV 1312
W E D LL+G+++HGY + ++ DP L +K+
Sbjct: 1261 WGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKI 1296
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 519 bits (1336), Expect = e-146
Identities = 344/963 (35%), Positives = 504/963 (52%), Gaps = 146/963 (15%)
Query: 318 FYVKYRNFSYLHCKWATMEELEKDPRIA----------------------QKIKRFRNKQ 355
F+VK++ SY HC W + +LE ++ +K ++ +NK
Sbjct: 543 FFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNKD 602
Query: 356 AQMKHIFTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEEST 411
+ F E +E + P+++ + RIL + K HYL+KW LPY++++
Sbjct: 603 PK----FAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHV-----HYLIKWRDLPYDQAS 653
Query: 412 WELEE----DVDPAKVKEFESLQVLP-------------EIKHVERPAS----DSWQKLE 450
WE E+ D D K + +++ +++ +ERP D K E
Sbjct: 654 WESEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYE 713
Query: 451 KSREYKNSN--QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG- 507
+ EY ++ L YQ+EG+NWL F+W + ILADEMGLGKT+Q+ FL ++ G
Sbjct: 714 RQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGH 773
Query: 508 IHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRD-------- 558
GPFL+ APLSTI NWEREF W +M + Y G + SR +I++ E + D
Sbjct: 774 SKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKK 833
Query: 559 AQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMA 618
A KFHV++T++E+I D L I W+C+I+DEAHRLKN K L +
Sbjct: 834 ASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYS 893
Query: 619 LEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPM 678
L+HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L P
Sbjct: 894 LQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPH 953
Query: 679 MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTM 738
MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N +
Sbjct: 954 MLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG-NQVSLLNVV 1012
Query: 739 MELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPKLI 796
M+L+KCCNHPYL A + +P P+ + A+I+A+GKL+L+ K+L L
Sbjct: 1013 MDLKKCCNHPYLFPVAAME---------APKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1063
Query: 797 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856
GGH+VLIFSQM + LD+LED+L Y YERIDG + GN+RQ AIDRF P + +F FL
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Query: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
L TRAGGLGINL ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S E
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1183
Query: 917 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGS---- 972
+ A K+ L V+ R G + +SK E++D+L+ G DE +G
Sbjct: 1184 ITQVAKKKMMLTHLVV----RPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNK 1239
Query: 973 --------KFCEEDIDQILQR-RTHTITIQSEGKG---STFAKASFVA----SGNRTDIS 1016
+ ++ I+++L R + T + +G S+F A +V G ++
Sbjct: 1240 EGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVE 1299
Query: 1017 LD--------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDEL 1065
+ DP++W+K L + ++E L + R+RKQ + + +ED
Sbjct: 1300 REIIKQEESVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRD 1354
Query: 1066 MEFSELDSDSD-------------------ERPTRSRRLNDKARRYLRAECFRVEKNLLI 1106
+ + D+ SD RP+R NDK + L RV N+ +
Sbjct: 1355 WQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKP-LPPLLARVGGNIEV 1413
Query: 1107 FGW-GRWKDILTHGRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPT 1162
G+ R + + ++ + +D + + R L K +K + F+ L P
Sbjct: 1414 LGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKA--YVSLFMRHLCEPG 1471
Query: 1163 KDG 1165
DG
Sbjct: 1472 ADG 1474
Score = 54.3 bits (129), Expect = 2e-06
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 111 SKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKR 170
S+ PK K+K++PK+P++P+ K ++ KE ++ G P E +E R
Sbjct: 44 SETETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGP-EFVEEEEEVALR 102
Query: 171 SCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTES 230
S ++ + T +K K+ GP EKK K KRK E EE +
Sbjct: 103 SDSEGSDYTPGKKKKKKLGPKK-EKKSKSKRKEE-------------------EEEEDDD 142
Query: 231 TDSQKRRSGRQVKRRKYNEDLDFKVVDDDGETI 263
DS++ +S Q+ ED+D ++D T+
Sbjct: 143 DDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTL 175
Score = 32.7 bits (73), Expect = 5.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 83 EDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKE 141
+ G T KKK+KK P K+++ K KRK E +E + +KEPK + +
Sbjct: 104 DSEGSDYTPGKKKKKKLGP---------KKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQ 153
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 515 bits (1326), Expect = e-145
Identities = 370/1104 (33%), Positives = 574/1104 (51%), Gaps = 145/1104 (13%)
Query: 90 TGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKD 149
+ + KK+++++ Q A+ S E + + E K+ K E Q
Sbjct: 99 SAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDS------SSEVKRKKHKDEDWQMS 152
Query: 150 GAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKR---KSETT 206
G+ + S ++E +EK SC ++ + + + K + P K K GK+ + +
Sbjct: 153 GSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQ 212
Query: 207 VESLELDQGLTNPSLRSPEESTESTDSQKRRSGRQVKRR-KYNEDLDFKVVDDDGETIAV 265
++S E D + E D+ KR S RQ Y ED + K DD + V
Sbjct: 213 IDSSEED------------DDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDD--LLEV 258
Query: 266 LGAGRTSALSASTLAWQAEEPPEDDANIIEKIL-----------ASKTVQEVHP-GEPPF 313
G +P E++ IE+ + A+ T+ V G+P
Sbjct: 259 CGE-------------DVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNA 305
Query: 314 DLEL--------FYVKYRNFSYLHCKWATMEEL-EKDPRIAQKIKRFRNKQAQMKHIF-- 362
E + +K++ +S++H W T E L +++ R +K+ ++ K + K
Sbjct: 306 GFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKN 365
Query: 363 TEPDE-----------DLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEEST 411
P++ D + Y V+RI+ ++ K A + Y KW LPY E +
Sbjct: 366 ASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPD---YYCKWQGLPYSECS 422
Query: 412 WE------------LEE--DVDPAKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKN 457
WE ++E + +K F+ +VL + RP + +K
Sbjct: 423 WEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQ-----RPRFVALKKQPSYIGGHE 477
Query: 458 SNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-IHGPFLIIA 516
+LR+YQL G+NWL +W +CILADEMGLGKTIQ+I+FL+ +F ++GPFL++
Sbjct: 478 GLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVV 537
Query: 517 PLSTITNWEREFRTW-TEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVIT 575
PLST+T+W+RE +TW ++MNA+VY G SR MI+ +E + + KF++++T
Sbjct: 538 PLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKR------LKFNILLT 591
Query: 576 TFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVE 635
T+E++L D L ++W+ + +DEAHRLKN + L + L H++L+TGTPLQNS++
Sbjct: 592 TYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 651
Query: 636 ELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQ 695
EL+SLL+F+ P +F S F EE G + E L L+P +LRR+K DVEK+L K
Sbjct: 652 ELWSLLHFIMPEKFSSWEDFEEEHGKGR-EYGYASLHKELEPFLLRRVKKDVEKSLPAKV 710
Query: 696 ETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAE 755
E I+ +E++ +QK+YY+ IL +N+ L+KG+ + + +N MMEL+KCCNH YLI +
Sbjct: 711 EQILRMEMSALQKQYYKWILTRNYKALSKGS-KGSTSGFLNIMMELKKCCNHCYLIKPPD 769
Query: 756 EKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDIL 815
E + K + LQ +I+++GKL+L+DKLL +L G++VLIFSQMVR LDIL
Sbjct: 770 NN--EFYNKQEA-------LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDIL 820
Query: 816 EDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCI 875
+YL R++ ++R+DG ++G LR+ A+D F S+ F FLL TRAGGLGINL +ADT +
Sbjct: 821 AEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVV 880
Query: 876 IFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDI 935
IFDSDWNPQNDLQAQAR HRIGQ K V +YRL+T+ S E ++ ++A K+ LD V+Q +
Sbjct: 881 IFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940
Query: 936 NRKGGT--------NGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQR-R 986
+ G T + +K E+ +L+ GA + E E + E DID+IL+R
Sbjct: 941 DTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAE 1000
Query: 987 TH-----TITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKNEKE 1041
TH +T+ E S F A+F ++ + DI L+ + W +I D + E+E
Sbjct: 1001 THENEPGPLTVGDE-LLSQFKVANF-SNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEE 1058
Query: 1042 SL------VIDRPRVRKQTKH--YNSFE--EDELMEFSELDSDS---DERPTRSRRLNDK 1088
+ PR+R K +N E +S DSDS +RP + R
Sbjct: 1059 ERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTI 1118
Query: 1089 ARRYLR----AECFRVEKNLLIFG 1108
R ++ AE R K+ FG
Sbjct: 1119 PRENIKGFSDAEIRRFIKSYKKFG 1142
Score = 38.5 bits (88), Expect = 0.091
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 31/146 (21%)
Query: 1277 WDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDE------------------K 1318
W E D +LLIG++++GY + ++ DP L K+ +PD+ K
Sbjct: 1253 WGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKI-LPDDPDKKPQAKQLQTRADYLIK 1311
Query: 1319 SLS---AEQGVTDGTSDIPERGNTDKEDNA--------EDKVDGLQKQTESSSDGGDGVF 1367
LS A++ G R K++ A E K D +E SD D
Sbjct: 1312 LLSRDLAKKEALSGAGSSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSE-KSDEDDDKL 1370
Query: 1368 SEKKDDSRAAQDGSDPDKSPWPVSSA 1393
SE K D R S +P ++++
Sbjct: 1371 SESKSDGRERSKKSSVSDAPVHITAS 1396
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 514 bits (1325), Expect = e-145
Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)
Query: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361
F+VK+ SY HC WA +LE + + + +N + +
Sbjct: 550 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 609
Query: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413
+ E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE
Sbjct: 610 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 664
Query: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451
+E DPA+ ++++ + L P +D K E
Sbjct: 665 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 724
Query: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508
+ L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G
Sbjct: 725 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784
Query: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566
GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G
Sbjct: 785 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 841
Query: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616
KFHV++T++E+I D L I W+C+++DEAHRLKN K L
Sbjct: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
Query: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676
++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L
Sbjct: 902 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 961
Query: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N
Sbjct: 962 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1020
Query: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794
MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973
+ A K+ L V+ R G + +SK E++D+L+ G DE + +K
Sbjct: 1192 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1247
Query: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018
+ E I ++L R T +Q+ + S+F A +V ++
Sbjct: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1307
Query: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067
DP++W+K L + ++E L + RVRKQ + ++ +ED+ E
Sbjct: 1308 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1362
Query: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118
+S E D D DERP R+L ++ + L RV N+ + G+ R + +
Sbjct: 1363 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
Query: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165
+W + +D + + R L K +K + F+ L P DG
Sbjct: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1470
Score = 33.1 bits (74), Expect = 3.8
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178
KRKR PK+ KE + K K+ K E + + R+ E+ G++ +
Sbjct: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 100
Query: 179 TKSRKASKEQGPTPVEKKKKGK 200
K R+ +E+ +++KKG+
Sbjct: 101 RKRRRKHREKKEKKTKRRKKGE 122
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 514 bits (1325), Expect = e-145
Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)
Query: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361
F+VK+ SY HC WA +LE + + + +N + +
Sbjct: 550 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 609
Query: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413
+ E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE
Sbjct: 610 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 664
Query: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451
+E DPA+ ++++ + L P +D K E
Sbjct: 665 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 724
Query: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508
+ L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G
Sbjct: 725 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 784
Query: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566
GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G
Sbjct: 785 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 841
Query: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616
KFHV++T++E+I D L I W+C+++DEAHRLKN K L
Sbjct: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
Query: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676
++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L
Sbjct: 902 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 961
Query: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N
Sbjct: 962 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1020
Query: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794
MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973
+ A K+ L V+ R G + +SK E++D+L+ G DE + +K
Sbjct: 1192 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1247
Query: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018
+ E I ++L R T +Q+ + S+F A +V ++
Sbjct: 1248 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1307
Query: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067
DP++W+K L + ++E L + RVRKQ + ++ +ED+ E
Sbjct: 1308 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1362
Query: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118
+S E D D DERP R+L ++ + L RV N+ + G+ R + +
Sbjct: 1363 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1422
Query: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165
+W + +D + + R L K +K + F+ L P DG
Sbjct: 1423 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1470
Score = 33.1 bits (74), Expect = 3.8
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178
KRKR PK+ KE + K K+ K E + + R+ E+ G++ +
Sbjct: 49 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 100
Query: 179 TKSRKASKEQGPTPVEKKKKGK 200
K R+ +E+ +++KKG+
Sbjct: 101 RKRRRKHREKKEKKTKRRKKGE 122
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 514 bits (1325), Expect = e-145
Identities = 349/950 (36%), Positives = 497/950 (52%), Gaps = 131/950 (13%)
Query: 318 FYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHI---------------- 361
F+VK+ SY HC WA +LE + + + +N + +
Sbjct: 609 FFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKV 668
Query: 362 ----FTEPDEDLFN----PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWE 413
+ E +E + P+++ V RI+ H+ D + HYLVKW LPY++STWE
Sbjct: 669 KDPHYAEMEEKYYRFGIKPEWMTVHRIIN--HSVDKKGNY---HYLVKWRDLPYDQSTWE 723
Query: 414 LEE---------------------DVDPAKVKEFESLQV-LPEIKHVERPASDSWQKLEK 451
+E DPA+ ++++ + L P +D K E
Sbjct: 724 EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYET 783
Query: 452 SREY--KNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-I 508
+ L YQLEG+NWL F+W + ILADEMGLGKTIQ+I FL ++ G
Sbjct: 784 QPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHT 843
Query: 509 HGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 566
GPFL+ APLSTI NWEREF+ W + + Y G + SR +I++ E + D N + G
Sbjct: 844 KGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFED---NAIKGG 900
Query: 567 ----------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL 616
KFHV++T++E+I D L I W+C+++DEAHRLKN K L
Sbjct: 901 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 960
Query: 617 MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILK 676
++HK+LLTGTPLQN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L
Sbjct: 961 YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLG 1020
Query: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
P MLRRLK DV KN+ K E I+ VEL+ +QKKYY+ IL +NF L N +L+N
Sbjct: 1021 PHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGG-NQVSLLN 1079
Query: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPK 794
MM+L+KCCNHPYL A + SP P ++ A+I+++GKL+L+ K+L K
Sbjct: 1080 IMMDLKKCCNHPYLFPVAAME---------SPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
Query: 795 LIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
L GH+VLIFSQM + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F
Sbjct: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
Query: 855 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 914
FLL TRAGGLGINL ADT IIFDSDWNP ND+QA +R HRIGQ+ V +YR +TR S E
Sbjct: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Query: 915 REMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSK- 973
+ A K+ L V+ R G + +SK E++D+L+ G DE + +K
Sbjct: 1251 ERITQVAKRKMMLTHLVV----RPGLGSKAGSMSKQELDDILKFGTEELFKDENEGENKE 1306
Query: 974 -------FCEEDIDQILQRR---THTITIQSEGKG-STFAKASFVASGNRTDISLD---- 1018
+ E I ++L R T +Q+ + S+F A +V ++
Sbjct: 1307 EDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREII 1366
Query: 1019 ------DPNFWQKWAKIAELDTEAKNEKESLVID---RPRVRKQTKHYNSFEEDE--LME 1067
DP++W+K L + ++E L + RVRKQ + ++ +ED+ E
Sbjct: 1367 KQEENVDPDYWEKL-----LRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQDNQSE 1421
Query: 1068 FS----ELDSDSDERP----TRSRRLNDKARRYLRAECFRVEKNLLIFGWG-RWKDILTH 1118
+S E D D DERP R+L ++ + L RV N+ + G+ R + +
Sbjct: 1422 YSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLN 1481
Query: 1119 GRFKWHLNEKD---MEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDG 1165
+W + +D + + R L K +K + F+ L P DG
Sbjct: 1482 AVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKA--YVSLFMRHLCEPGADG 1529
Score = 33.1 bits (74), Expect = 3.8
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 119 KRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAAR 178
KRKR PK+ KE + K K+ K E + + R+ E+ G++ +
Sbjct: 108 KRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYG--------TGPG 159
Query: 179 TKSRKASKEQGPTPVEKKKKGK 200
K R+ +E+ +++KKG+
Sbjct: 160 RKRRRKHREKKEKKTKRRKKGE 181
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 494 bits (1272), Expect = e-139
Identities = 298/761 (39%), Positives = 421/761 (55%), Gaps = 101/761 (13%)
Query: 279 LAWQAEEPPEDDANIIEKILASKTVQEVHPGEPP------FDLELFYVKYRNFSYLHCKW 332
L W+ EPP + +V P PP F+VK+ SY HC W
Sbjct: 473 LHWRWTEPPAP-------FMVGLPGPDVEPSLPPPKPLEGIPEREFFVKWAGLSYWHCSW 525
Query: 333 ATMEELEKDPRIAQKIKRFRN--------------------KQAQMKHIFTEPDEDLFN- 371
+LE + + + +N K+ ++ + +E +
Sbjct: 526 VKELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRY 585
Query: 372 ---PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVD--------- 419
P+++ + RIL + K + HYL+KW LPY++ TWE++ D+D
Sbjct: 586 GIKPEWMMIHRILNHSFDKKGDV-----HYLIKWKDLPYDQCTWEID-DIDIPYYDNLKQ 639
Query: 420 ----------------PAKV-KEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSN--Q 460
P ++ K+ + L+ + K + P D K +K Y +S
Sbjct: 640 AYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGT 699
Query: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRG-IHGPFLIIAPLS 519
L YQLEG+NWL F+W + ILADEMGLGKT+Q+I FL ++ G GP+L+ APLS
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 759
Query: 520 TITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF--------KF 570
TI NWEREF W + + Y G + SR +I++ E + D VF KF
Sbjct: 760 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKF 819
Query: 571 HVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPL 630
HV++T++E+I D L I W+C+++DEAHRLKN K L +++K+LLTGTPL
Sbjct: 820 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPL 879
Query: 631 QNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKN 690
QN++EELF LLNFL P +F + FLEEF D+ E+Q+KKL +L P MLRRLK DV KN
Sbjct: 880 QNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKN 939
Query: 691 LAPKQETIIEVELTNIQKKYYRAILEKNFSFL-TKGANQHNMPNLINTMMELRKCCNHPY 749
+ K E I+ VEL+ +QKKYY+ IL +NF L +KG N +L+N MM+L+KCCNHPY
Sbjct: 940 MPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG--NQVSLLNIMMDLKKCCNHPY 997
Query: 750 LINGAEEKILEDFRKTHSPDAPD--FQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQ 807
L A +P P+ + ++++++GKL+L+ K+L KL GH+VLIFSQ
Sbjct: 998 LFPVAA---------VEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQ 1048
Query: 808 MVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGIN 867
M + LD+LED+L Y YERIDG + G LRQ AIDRF P + +F FLL TRAGGLGIN
Sbjct: 1049 MTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGIN 1108
Query: 868 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGL 927
L ADT II+DSDWNP ND+QA +R HRIGQ+K V +YR +TR S E + A K+ L
Sbjct: 1109 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168
Query: 928 DKAVLQ-DINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDE 967
V++ + K G+ ++K E++D+L+ G D+
Sbjct: 1169 THLVVRPGLGSKSGS-----MTKQELDDILKFGTEELFKDD 1204
Score = 42.0 bits (97), Expect = 0.008
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 65 EEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPKRKREP 124
EEE LF +M + + M + GG EP K K +E K K KR+
Sbjct: 8 EEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKK 67
Query: 125 KEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTD 174
KE ++ + +E E + D + +K ++ KE K KR D
Sbjct: 68 KEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKD 117
Score = 37.4 bits (85), Expect = 0.20
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 124 PKEPKEPRKAKEPKKAKEHK---EPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTK 180
P EP K K+PKK KE+K + K+K+G+ E E K + +D + K
Sbjct: 41 PVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEED--LEEKSESEGSDYSPNKK 98
Query: 181 SRKASKEQGPTPVEKKKKGKRKSE 204
+K K++ EKK K K+K E
Sbjct: 99 KKKKLKDKK----EKKAKRKKKDE 118
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 407 bits (1047), Expect = e-113
Identities = 233/557 (41%), Positives = 334/557 (59%), Gaps = 34/557 (6%)
Query: 434 EIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKT 493
E+ R S+ + E S Y LR+YQ+ G+NWL+ + N N ILADEMGLGKT
Sbjct: 156 ELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKT 215
Query: 494 IQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQ 551
+Q+I L + R I GP +++ P ST+ NW EF+ W + I + G + +R +
Sbjct: 216 LQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR 275
Query: 552 YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLL 611
EM+ + + V +T++EM++ + KK HW ++IDEAHR+KN KL
Sbjct: 276 DEMMPGE-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLS 324
Query: 612 EGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD---LKTEEQV 668
E ++ +++LLTGTPLQN++ EL++LLNFL P F S F F L ++ V
Sbjct: 325 EIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV 384
Query: 669 KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ 728
++L ++LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K+ L
Sbjct: 385 ERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKM 444
Query: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
M L+N +M+LRKCCNHPYL +GAE P P + ++ +GK+V++
Sbjct: 445 DKM-RLLNILMQLRKCCNHPYLFDGAE------------PGPPYTTDEHIVSNSGKMVVL 491
Query: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 848
DKLL KL G +VLIFSQM R LDILEDY + R Y Y R+DG+ R+ AI+ F P
Sbjct: 492 DKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAP 551
Query: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRIGQ K V+V+RLI
Sbjct: 552 NSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLI 611
Query: 909 TRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEE 968
T N+ E + ++A +KL LD V+Q G QQ +K+ E++L+ +GA
Sbjct: 612 TDNTVEERIVERAEIKLRLDSIVIQQ-----GRLIDQQSNKLAKEEMLQMIRHGATHVFA 666
Query: 969 DEGSKFCEEDIDQILQR 985
+ S+ +EDI IL+R
Sbjct: 667 SKESELTDEDITTILER 683
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 402 bits (1034), Expect = e-111
Identities = 247/655 (37%), Positives = 370/655 (56%), Gaps = 51/655 (7%)
Query: 442 ASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 501
A++ + E S Y +LR+YQ+ G+NWL+ + N N ILADEMGLGKT+Q+I+ L
Sbjct: 161 ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG 220
Query: 502 EI-FLRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDA 559
+ R I GP +++ P ST+ NW EF+ W + ++ G + +Q RD
Sbjct: 221 YMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDK------EQRAAFVRDV 274
Query: 560 QGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMAL 619
L G ++ V +T++EM++ + KK +W ++IDEAHR+KN KL E ++
Sbjct: 275 L---LPG--EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKT 329
Query: 620 EHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD---LKTEEQVKKLQSILK 676
+++LLTGTPLQN++ EL+SLLNFL P F S F F L ++ V++L +L+
Sbjct: 330 TNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLR 389
Query: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL K+ L M L+N
Sbjct: 390 PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKM-RLLN 448
Query: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLI 796
+M+LRKCCNHPYL +GAE P P ++ +GK+V++DKLLPKL
Sbjct: 449 ILMQLRKCCNHPYLFDGAE------------PGPPYTTDMHLVTNSGKMVVLDKLLPKLK 496
Query: 797 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856
G +VLIFSQM R LDILEDY + R Y Y R+DG+ + RQ +I+ + +P+S +FVF+
Sbjct: 497 EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFM 556
Query: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
L TRAGGLGINL AD I++DSDWNPQ DLQA R HRIGQ+K V+V+R IT N+ E
Sbjct: 557 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEER 616
Query: 917 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCE 976
+ ++A +KL LD V+Q G Q L+K+ +++L+ +GA + S+ +
Sbjct: 617 IVERAEMKLRLDSIVIQQ-----GRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITD 671
Query: 977 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEA 1036
EDID IL+R +E K S + + + ++D + + + E
Sbjct: 672 EDIDGILERGAKKTAEMNE-------KLSKMGESSLRNFTMDTE------SSVYNFEGED 718
Query: 1037 KNEKESLV----IDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1087
EK+ + I+ P+ ++ + E + SE + RP + + D
Sbjct: 719 YREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQD 773
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 399 bits (1024), Expect = e-110
Identities = 233/569 (40%), Positives = 334/569 (58%), Gaps = 46/569 (8%)
Query: 434 EIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKT 493
E+ R S+ + E S Y LR+YQ+ G+NWL+ + N N ILADEMGLGKT
Sbjct: 156 ELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKT 215
Query: 494 IQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQ 551
+Q+I L + R I GP +++ P ST+ NW EF+ W + I + G + +R +
Sbjct: 216 LQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR 275
Query: 552 YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLL 611
EM+ + + V +T++EM++ + KK HW ++IDEAHR+KN KL
Sbjct: 276 DEMMPGE-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLS 324
Query: 612 EGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD---LKTEEQV 668
E ++ +++LLTGTPLQN++ EL++LLNFL P F S F F L ++ V
Sbjct: 325 EIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV 384
Query: 669 KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ 728
++L ++LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K+ L
Sbjct: 385 ERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKM 444
Query: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
M L+N +M+LRKCCNHPYL +GAE P P + ++ +GK+V++
Sbjct: 445 DKM-RLLNILMQLRKCCNHPYLFDGAE------------PGPPYTTDEHIVSNSGKMVVL 491
Query: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQ--------- 839
DKLL KL G +VLIFSQM R LDILEDY + R Y Y R+DG+ R+
Sbjct: 492 DKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFL 551
Query: 840 ---AAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 896
AI+ F P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRI
Sbjct: 552 GQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 611
Query: 897 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLL 956
GQ K V+V+RLIT N+ E + ++A +KL LD V+Q G QQ +K+ E++L
Sbjct: 612 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ-----GRLIDQQSNKLAKEEML 666
Query: 957 RKGAYGALMDEEDEGSKFCEEDIDQILQR 985
+ +GA + S+ +EDI IL+R
Sbjct: 667 QMIRHGATHVFASKESELTDEDITTILER 695
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 378 bits (971), Expect = e-104
Identities = 224/531 (42%), Positives = 325/531 (61%), Gaps = 42/531 (7%)
Query: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI---HGPFLIIAP 517
LR YQLEG+NWL ++ + CIL DEMGLGKT Q+I I+L G GPFLI+ P
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALF--IYLAGRLNDEGPFLILCP 103
Query: 518 LSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITT 576
LS ++NW+ E + + ++ + Y G + R +QQ L +FHV++TT
Sbjct: 104 LSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQ-----------DLKQESRFHVLLTT 152
Query: 577 FEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEE 636
+E+ L D LK WS +++DEAHRLKN++ L + L ++ +LLTGTP+QNS++E
Sbjct: 153 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 637 LFSLLNFLEPSQFPSETA--FLEEFGDLKTE-EQVKKLQSILKPMMLRRLKDDVEKNLAP 693
L+SLL+F+EP F E F++ + D++ E E +L +L+P +LRR+K +V L
Sbjct: 213 LYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPK 272
Query: 694 KQETIIEVELTNIQKKYYRAILEKNF-SFLTKGANQHNMPNLINTMMELRKCCNHPYLIN 752
K E +I ++ +QKKYY+AIL K+ +F + A + + N+++ +LRKC +HPYL +
Sbjct: 273 KTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILS---QLRKCVDHPYLFD 329
Query: 753 GAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCL 812
G E + E + +A+GKL L+DKLL L +GGH+VL+FSQM + L
Sbjct: 330 GVEPEPFEVG-------------DHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQML 376
Query: 813 DILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAAD 872
DIL+DY+ R Y+YER+DG VRG R AI F + FVFLL TRAGG+G+NLTAAD
Sbjct: 377 DILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPI--FVFLLSTRAGGVGMNLTAAD 434
Query: 873 TCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 932
T I DSD+NPQNDLQA AR HRIGQ+K+VKV RLI R++ E ++ KA+ KL L ++
Sbjct: 435 TVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMII 494
Query: 933 QDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQIL 983
+ + G + +++ ++L+ G L EGS E D++ IL
Sbjct: 495 EGGHFTLGAQKPAADADLQLSEILKFGLDKLL---ASEGSTMDEIDLESIL 542
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 366 bits (939), Expect = e-100
Identities = 229/605 (37%), Positives = 337/605 (55%), Gaps = 104/605 (17%)
Query: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLST 520
+R YQ+EGM WL W N N ILADEMGLGKT+Q I ++ + RG+ GPFL+ PLST
Sbjct: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLST 282
Query: 521 ITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH-VVITTFE 578
+ NW EF+ +T ++ ++YHG+Q RQ + + +Y+ G + H VVIT+FE
Sbjct: 283 LPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRN--IYKR------KGTLQIHPVVITSFE 334
Query: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
+ + D L+ +W +I+DE HR+KN C+L+ LK ++K+LLTGTPLQN++ EL+
Sbjct: 335 IAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELW 394
Query: 639 SLLNFLEPSQFPSETAFLEEFGDL------------KTEEQ--VKKLQSILKPMMLRRLK 684
SLLNFL P F +F E + D+ K EQ + L IL P +LRRLK
Sbjct: 395 SLLNFLLPDVFDDLKSF-ESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLK 453
Query: 685 DDVEKNLAPKQETIIEVELTNIQKKYYRAI------------------------------ 714
DV + PK+E ++ L+ Q+ +Y AI
Sbjct: 454 SDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTR 513
Query: 715 --------------LEKNFSFLTKGANQH------NMP-------NLINTMMELRKCCNH 747
LEK S + ++ N+P L N MM LRKCCNH
Sbjct: 514 KSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNH 573
Query: 748 PYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQ 807
PYLI + + ++F+ + ++ +GK +++D++LP+L GHKVL+FSQ
Sbjct: 574 PYLIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623
Query: 808 MVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGIN 867
M LDIL DY R + + R+DG + + R+ + F D + F+FL+ TRAGGLGIN
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSF-NTDPEVFIFLVSTRAGGLGIN 682
Query: 868 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGL 927
LTAADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V VYRL+T N+ ++++ ++A+ K L
Sbjct: 683 LTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
Query: 928 DKAVLQDINRKGGTNGVQQ----LSKMEVEDLLRKGAYGALMDEEDEGSK---FCEEDID 980
+K ++ + KGG +G+ L E+ +LL+ Y + E +GS+ ++D++
Sbjct: 743 EKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREKVISDKDLE 798
Query: 981 QILQR 985
+L R
Sbjct: 799 LLLDR 803
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 364 bits (935), Expect = e-100
Identities = 279/878 (31%), Positives = 430/878 (48%), Gaps = 125/878 (14%)
Query: 202 KSETTVESLELDQGLTNPSLRSPEES--TESTDSQKRRSGRQVKRRKYNEDLDFKVVD-D 258
+ +TT+E+ + ++ E+ TE + Q++ + +R+K+ E L+ +
Sbjct: 401 RRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAK 460
Query: 259 DGETIAVLGAGRTSALSASTLAWQA--EEPPEDDANIIEKILASKTVQEVHPG-----EP 311
D + AG+ LS + W A E + + IEK + + E G +
Sbjct: 461 DFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ 520
Query: 312 PFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFN 371
D L Y+ + Y+ + E ++ +K KR R K+ ++ E E
Sbjct: 521 KKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEEN--AEGGESALG 578
Query: 372 PDYVEVDRI-------LEVAHTKDAET--GEEV--THYLVKWCSL--------------- 405
PD +D ++V HT+ + G E L W +
Sbjct: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEES 638
Query: 406 --PYEE-------STWELEEDV--DP--AKVKEFESLQVLPEIKH---------VERPAS 443
YEE S E EE + DP +V E ++ Q++ K S
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
Query: 444 DSW--------QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 495
S+ +++EK + L+ YQL+G+ W++ + N N ILADEMGLGKTIQ
Sbjct: 699 QSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQ 758
Query: 496 SITFLSEIFL-RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYE 553
+I ++ + + ++GP+LII PLST++NW EF W + I Y G+ R+ +
Sbjct: 759 TIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV--- 815
Query: 554 MVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG 613
P KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL +
Sbjct: 816 ---------PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 866
Query: 614 LKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DL 662
L ++LLTGTPLQN + EL++LLNFL P+ F S + F + F DL
Sbjct: 867 LNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDL 926
Query: 663 KTEEQV---KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNF 719
EE + ++L +L+P +LRRLK +VE L K E +I+ +++ +QK YR + K
Sbjct: 927 NEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 986
Query: 720 SFLTKGANQHNM-----PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQ 774
LT G+ + L+NT+M+LRK CNHPY+ EE E ++
Sbjct: 987 -LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV----IN 1041
Query: 775 LQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVR 834
+ +A+GK L+D++LPKL A H+VL+F QM + I+EDY R + Y R+DG +
Sbjct: 1042 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
Query: 835 GNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 894
R A + +F +P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ R H
Sbjct: 1102 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAH 1161
Query: 895 RIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEV 952
RIGQ V+V RL T NS E ++ A KL +D+ V+Q ++K ++
Sbjct: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE--------- 1212
Query: 953 EDLLRKGAYGALMDEEDEGSKFCE----EDIDQILQRR 986
R+ A+++ E+E + E E ++Q++ RR
Sbjct: 1213 ----RRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 364 bits (935), Expect = e-100
Identities = 279/878 (31%), Positives = 430/878 (48%), Gaps = 125/878 (14%)
Query: 202 KSETTVESLELDQGLTNPSLRSPEES--TESTDSQKRRSGRQVKRRKYNEDLDFKVVD-D 258
+ +TT+E+ + ++ E+ TE + Q++ + +R+K+ E L+ +
Sbjct: 401 RRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAK 460
Query: 259 DGETIAVLGAGRTSALSASTLAWQA--EEPPEDDANIIEKILASKTVQEVHPG-----EP 311
D + AG+ LS + W A E + + IEK + + E G +
Sbjct: 461 DFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ 520
Query: 312 PFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFN 371
D L Y+ + Y+ + E ++ +K KR R K+ ++ E E
Sbjct: 521 KKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEEN--AEGGESALG 578
Query: 372 PDYVEVDRI-------LEVAHTKDAET--GEEV--THYLVKWCSL--------------- 405
PD +D ++V HT+ + G E L W +
Sbjct: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEES 638
Query: 406 --PYEE-------STWELEEDV--DP--AKVKEFESLQVLPEIKH---------VERPAS 443
YEE S E EE + DP +V E ++ Q++ K S
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
Query: 444 DSW--------QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 495
S+ +++EK + L+ YQL+G+ W++ + N N ILADEMGLGKTIQ
Sbjct: 699 QSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQ 758
Query: 496 SITFLSEIFL-RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYE 553
+I ++ + + ++GP+LII PLST++NW EF W + I Y G+ R+ +
Sbjct: 759 TIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV--- 815
Query: 554 MVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG 613
P KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL +
Sbjct: 816 ---------PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 866
Query: 614 LKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DL 662
L ++LLTGTPLQN + EL++LLNFL P+ F S + F + F DL
Sbjct: 867 LNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDL 926
Query: 663 KTEEQV---KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNF 719
EE + ++L +L+P +LRRLK +VE L K E +I+ +++ +QK YR + K
Sbjct: 927 NEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 986
Query: 720 SFLTKGANQHNM-----PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQ 774
LT G+ + L+NT+M+LRK CNHPY+ EE E ++
Sbjct: 987 -LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV----IN 1041
Query: 775 LQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVR 834
+ +A+GK L+D++LPKL A H+VL+F QM + I+EDY R + Y R+DG +
Sbjct: 1042 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
Query: 835 GNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 894
R A + +F +P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ R H
Sbjct: 1102 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAH 1161
Query: 895 RIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEV 952
RIGQ V+V RL T NS E ++ A KL +D+ V+Q ++K ++
Sbjct: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE--------- 1212
Query: 953 EDLLRKGAYGALMDEEDEGSKFCE----EDIDQILQRR 986
R+ A+++ E+E + E E ++Q++ RR
Sbjct: 1213 ----RRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 360 bits (924), Expect = 1e-98
Identities = 361/1265 (28%), Positives = 556/1265 (43%), Gaps = 227/1265 (17%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEED 969
NS E ++ A KL +D+ V+Q Q+ S E L+ L EE
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ------AGMFDQKSSSHERRAFLQ----AILEHEEQ 1256
Query: 970 EGSKFCEEDIDQILQRRTHTITIQSEGKGS-TFAKASFVASGNRTDISLDDPNFWQKWAK 1028
+ S+ C S G GS +FA + +G D L++P ++ +
Sbjct: 1257 DESRHC------------------STGSGSASFAHTAPPPAGVNPD--LEEPPLKEE-DE 1295
Query: 1029 IAELDTE----AKNEKE-----SLVIDRPR--VRKQTKHYNSFEEDELMEFSELDSDSDE 1077
+ + +T A++E+E + +DR R R + EEDEL + D E
Sbjct: 1296 VPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVE 1355
Query: 1078 RPTRSRRLNDKARRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDM----EMI 1133
R T ++ + + R R E + + D LT ++ + KD+ +
Sbjct: 1356 RLTCE---EEEEKMFGRGSRHRKEVD--------YSDSLTEKQWLKKITGKDIHDTASSV 1404
Query: 1134 CRAL-----LVYCVKHYKG-DEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGR--- 1184
R L L +C + K +E I E + K + + + +G S P R
Sbjct: 1405 ARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRD 1464
Query: 1185 ---KGKKTKNQLLIPELKDADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKA 1241
+ KK K + P A+ L+ P + K +K+ + V+ K
Sbjct: 1465 KDDESKKQKKRGRPP----AEKLSPNPPNLT-------KKMKKIVDAVI-------KYKD 1506
Query: 1242 EILGEAAEKAFEGSPARELDVPLPD-IDYMEIPVDWWDAEADKSLLIGVFKHGYERYNAM 1300
G + F P+R+ LP+ + + PVD+ K + + H Y N +
Sbjct: 1507 SSSGRQLSEVFIQLPSRK---ELPEYYELIRKPVDF------KKIKERIRNHKYRSLNDL 1557
Query: 1301 RADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERGNTDKEDN-----AEDKVDGLQKQ 1355
D L E SL E + + R +KED+ +E++ +G ++
Sbjct: 1558 EKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEG 1617
Query: 1356 TESSS 1360
+ES S
Sbjct: 1618 SESES 1622
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 358 bits (920), Expect = 3e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
Query: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
Query: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
Query: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
+ TG + L W + EES E EE+ + + + LP
Sbjct: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
Query: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
E K + P SD +++ +N+ Q
Sbjct: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
Query: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
Query: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
Query: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
Query: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
Query: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
Query: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
Query: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
Query: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
NS E ++ A KL +D+ V+Q
Sbjct: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 273 bits (699), Expect = 1e-72
Identities = 187/531 (35%), Positives = 275/531 (51%), Gaps = 66/531 (12%)
Query: 449 LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508
+E+ S L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL+ ++ G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 509 HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566
+GP LI+ P STI NW RE W + + Y+GSQ R+ I+ Y D
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596
Query: 567 VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
++V++TT+ ++ + +++ + I DE H LKN + L + +++
Sbjct: 597 ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673
LLTGTP+QN++ EL SLLNF+ P F S T+ + KT+ E++ +
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 674 ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ-HNMP 732
I+KP +LRR+K++V K L PK++ I ++ Q++ Y + F+ L K N
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGL----FNRLKKSINNLEKNT 769
Query: 733 NLINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD------------- 772
+ N MM+LRK NHP L EK+ E + TH PD
Sbjct: 770 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 829
Query: 773 -------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDY 818
FQL +I +GK ++ +L +L G +V++FSQ LDILE
Sbjct: 830 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 889
Query: 819 LIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 878
L ++ Y R+DG+ + + R ID F D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 890 LKHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHD 948
Query: 879 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
D NP ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++
Sbjct: 949 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 999
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 273 bits (698), Expect = 2e-72
Identities = 184/530 (34%), Positives = 274/530 (51%), Gaps = 62/530 (11%)
Query: 449 LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508
+E+ S L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL+ ++ G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 509 HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566
+GP LI+ P STI NW RE W + + Y+GSQ R+ I+ Y D
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596
Query: 567 VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
++V++TT+ ++ + +++ + I DE H LKN + L + +++
Sbjct: 597 ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673
LLTGTP+QN++ EL SLLNF+ P F S T+ + KT+ E++ +
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 674 ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPN 733
I+KP +LRR+K++V K L PK++ I ++ Q++ Y + + + + N
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-E 772
Query: 734 LINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD-------------- 772
+ N MM+LRK NHP L EK+ E + TH PD
Sbjct: 773 MCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFEL 832
Query: 773 ------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL 819
FQL +I +GK ++ +L +L G +V++FSQ LDILE L
Sbjct: 833 HVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892
Query: 820 IQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879
++ Y R+DG+ + + R ID F D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 893 KHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951
Query: 880 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
D NP ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++
Sbjct: 952 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 273 bits (698), Expect = 2e-72
Identities = 184/530 (34%), Positives = 274/530 (51%), Gaps = 62/530 (11%)
Query: 449 LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508
+E+ S L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL+ ++ G
Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
Query: 509 HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566
+GP LI+ P STI NW RE W + + Y+GSQ R+ I+ Y D
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596
Query: 567 VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
++V++TT+ ++ + +++ + I DE H LKN + L + +++
Sbjct: 597 ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
Query: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673
LLTGTP+QN++ EL SLLNF+ P F S T+ + KT+ E++ +
Sbjct: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
Query: 674 ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPN 733
I+KP +LRR+K++V K L PK++ I ++ Q++ Y + + + + N
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-E 772
Query: 734 LINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD-------------- 772
+ N MM+LRK NHP L EK+ E + TH PD
Sbjct: 773 MCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFEL 832
Query: 773 ------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL 819
FQL +I +GK ++ +L +L G +V++FSQ LDILE L
Sbjct: 833 HVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892
Query: 820 IQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879
++ Y R+DG+ + + R ID F D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 893 KHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951
Query: 880 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
D NP ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++
Sbjct: 952 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 249 bits (635), Expect = 3e-65
Identities = 171/512 (33%), Positives = 266/512 (51%), Gaps = 65/512 (12%)
Query: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFL-----SEIFLRGIH----- 509
+L +YQ G+ WL + IL DEMGLGKTIQ I FL S+I RG +
Sbjct: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
Query: 510 -GPFLIIAPLSTITNWEREFRTW-TEMNAIVYH--GSQISRQMIQQYEMVYRDAQGNPLS 565
GP +I+ P + + W +EF TW + H GS ++ E + RD
Sbjct: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKK-----EKLIRD------- 613
Query: 566 GVFKFH-VVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
V H ++IT++ I ++ + W VI+DE H+++N N + K H+++
Sbjct: 614 -VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
Query: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG--------DLKTEEQVKK------ 670
L+G+P+QN++ EL+SL +F+ P + + F+E+F + QVK
Sbjct: 673 LSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCAC 732
Query: 671 -LQSILKPMMLRRLKDDVEKNLA--PKQETIIEVELTNIQKKYYRAILE-KNFSFLTKGA 726
L+ + P +LRR+K DV+ +L+ K E ++ LT+ Q K Y+ ++ K + G
Sbjct: 733 VLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGE 792
Query: 727 NQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQ----AMIQAA 782
Q + + ++ LRK CNHP L +G + + PD +L+ + +
Sbjct: 793 MQ-----IFSGLIALRKICNHPDLFSGGPKNL---------KGLPDDELEEDQFGYWKRS 838
Query: 783 GKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAI 842
GK+++++ LL G +VL+FSQ + LDILE +L ++YTY ++DG RQ I
Sbjct: 839 GKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLI 898
Query: 843 DRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAV 902
R+ D+ FVFLL TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V
Sbjct: 899 TRY-NEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQV 957
Query: 903 KVYRLITRNSYEREMFDKASLKLGLDKAVLQD 934
VYRL+T + E +++ + K L VL+D
Sbjct: 958 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 989
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 225 bits (574), Expect = 4e-58
Identities = 165/568 (29%), Positives = 262/568 (46%), Gaps = 92/568 (16%)
Query: 455 YKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS------------- 501
Y + LR+YQ EG +L ++ + CIL D+MGLGKT+Q I+FL+
Sbjct: 128 YTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIE 187
Query: 502 ----EIFLRGIHGP---------FLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQM 548
E LR + FLI+APLS + NW+ E TW V HG++ ++
Sbjct: 188 NNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNEL 247
Query: 549 IQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNC 608
I+ + K + +TT+E + EL + WS VI+DEAHR+KN
Sbjct: 248 IRVKQR--------------KCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKA 293
Query: 609 KLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD------- 661
++ E +K + ++ LTGT LQN+++EL+ ++++ P S T F ++F D
Sbjct: 294 RVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQR 353
Query: 662 -LKTEEQV----KKLQSILKPM---MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRA 713
T+ ++ K +Q + K M LRR K ++ L K++ ++ LT+ QK Y+
Sbjct: 354 HTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
Query: 714 ILE----------------------KNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
+LE +N + T + ++ + L+K NH L+
Sbjct: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
Query: 752 NGA-----EEKILEDFRKTHSPDAPDFQLQAMIQA---------AGKLVLIDKLLPKLIA 797
A +E +++ PDF ++ A +GK+ ++ +LL
Sbjct: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRK 533
Query: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLL 857
KVL+FS + LD+L+ Y + Y R+DG + R + F D + L+
Sbjct: 534 NRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEF-NSTQDVNICLV 592
Query: 858 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 917
T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ + VKV RLI+ + E M
Sbjct: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
Query: 918 FDKASLKLGLDKAVLQDINRKGGTNGVQ 945
+ + K L V+ N K VQ
Sbjct: 653 YLRQIYKQQLHCVVVGSENAKRYFEAVQ 680
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,648,572
Number of Sequences: 37866
Number of extensions: 5831405
Number of successful extensions: 35910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 697
Number of HSP's that attempted gapping in prelim test: 24788
Number of HSP's gapped (non-prelim): 7852
length of query: 2715
length of database: 18,247,518
effective HSP length: 120
effective length of query: 2595
effective length of database: 13,703,598
effective search space: 35560836810
effective search space used: 35560836810
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 71 (32.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.