Search of human proteins with 29029555

Search of human proteins with 29029555

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29029555 Bardet-Biedl syndrome 7 protein isoform b [Homo
sapiens]
         (672 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29029557 Bardet-Biedl syndrome 7 protein isoform a [Homo sapi...  1343   0.0  
gi|29029555 Bardet-Biedl syndrome 7 protein isoform b [Homo sapi...  1343   0.0  
gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens]            48   3e-05
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]       37   0.077
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]        37   0.077
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]       37   0.077
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]        37   0.077
gi|122937345 myosin VB [Homo sapiens]                                  37   0.077
gi|51873049 hypothetical protein LOC8603 [Homo sapiens]                34   0.38 
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         33   0.86 
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]         33   0.86 
gi|34878904 synaptonemal complex protein 1 [Homo sapiens]              33   1.1  
gi|50980309 UTP15, U3 small nucleolar ribonucleoprotein, homolog...    33   1.1  
gi|9910266 kinesin family member 15 [Homo sapiens]                     33   1.1  
gi|112420968 coiled-coil domain containing 158 [Homo sapiens]          32   1.5  
gi|186928847 cirhin [Homo sapiens]                                     32   1.5  
gi|116812628 coiled-coil domain containing 67 [Homo sapiens]           32   1.5  
gi|71051596 coiled-coil domain containing 7 [Homo sapiens]             32   2.5  
gi|37059792 coiled-coil domain containing 7 [Homo sapiens]             32   2.5  
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]             31   4.2  
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]             31   4.2  
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]             31   4.2  
gi|21735562 mitogen-activated protein kinase kinase kinase 7 iso...    31   4.2  
gi|4507361 mitogen-activated protein kinase kinase kinase 7 isof...    31   4.2  
gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit...    31   4.2  
gi|52485941 integrin, alpha 9 precursor [Homo sapiens]                 30   5.5  
gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens]          30   7.2  
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform...    30   9.5  
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform...    30   9.5  
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s...    30   9.5  

>gi|29029557 Bardet-Biedl syndrome 7 protein isoform a [Homo
           sapiens]
          Length = 715

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 672/672 (100%), Positives = 672/672 (100%)

Query: 1   MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT 60
           MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
Sbjct: 1   MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT 60

Query: 61  LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD 120
           LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
Sbjct: 61  LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD 120

Query: 121 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV 180
           LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
Sbjct: 121 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV 180

Query: 181 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG 240
           MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
Sbjct: 181 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG 240

Query: 241 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD 300
           ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
Sbjct: 241 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD 300

Query: 301 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER 360
           SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
Sbjct: 301 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER 360

Query: 361 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV 420
           ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
Sbjct: 361 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV 420

Query: 421 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT 480
           DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
Sbjct: 421 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT 480

Query: 481 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC 540
           CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
Sbjct: 481 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC 540

Query: 541 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV 600
           VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
Sbjct: 541 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV 600

Query: 601 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY 660
           SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
Sbjct: 601 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY 660

Query: 661 KKQPAHLERLYG 672
           KKQPAHLERLYG
Sbjct: 661 KKQPAHLERLYG 672


>gi|29029555 Bardet-Biedl syndrome 7 protein isoform b [Homo
           sapiens]
          Length = 672

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 672/672 (100%), Positives = 672/672 (100%)

Query: 1   MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT 60
           MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT
Sbjct: 1   MDLILNRMDYLQVGVTSQKTMKLIPASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKT 60

Query: 61  LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD 120
           LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD
Sbjct: 61  LPGPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSD 120

Query: 121 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV 180
           LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV
Sbjct: 121 LFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDV 180

Query: 181 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG 240
           MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG
Sbjct: 181 MYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGG 240

Query: 241 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD 300
           ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD
Sbjct: 241 ILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKD 300

Query: 301 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER 360
           SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER
Sbjct: 301 SYDEIVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQER 360

Query: 361 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV 420
           ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV
Sbjct: 361 ENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDV 420

Query: 421 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT 480
           DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT
Sbjct: 421 DKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKT 480

Query: 481 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC 540
           CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC
Sbjct: 481 CQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGEC 540

Query: 541 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV 600
           VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV
Sbjct: 541 VTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEV 600

Query: 601 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY 660
           SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY
Sbjct: 601 SVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEY 660

Query: 661 KKQPAHLERLYG 672
           KKQPAHLERLYG
Sbjct: 661 KKQPAHLERLYG 672


>gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens]
          Length = 721

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 31/279 (11%)

Query: 129 YNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPG 188
           +NH  +  D  + ++GD +N +     +   +   ++  +D  +RV +  +++   E+  
Sbjct: 147 FNH--EGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIV--AEMTE 202

Query: 189 PPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFD 248
              V +L    G   G    +  S+G + +   T+    R W I   K +   + I +FD
Sbjct: 203 TEIVTSLCPMYGSRFG----YALSNGTVGVYDKTS----RYWRI---KSKNHAMSIHAFD 251

Query: 249 IVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKDSYDEIVVS 308
           +  DGV +L+ G  +G V+  S D   E +  F    S ++  +  G    D + +++  
Sbjct: 252 LNSDGVNELITGWSNGKVDARS-DRTGEVI--FKDNFSSAIAGVVEGDYRMDGHIQLICC 308

Query: 309 TYSGWVTGLTTEPIHKESGPG-EELKINQEMQNKISSLRNELEHLQYKVLQERENYQQSS 367
           +  G + G           PG  E++ N    +    L  EL   +  +L E  NY++++
Sbjct: 309 SVDGEIRGYL---------PGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENA 359

Query: 368 Q---SSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTA 403
           +   +S    A    GI    T      S SL  E QTA
Sbjct: 360 KAELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTA 398


>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
          Length = 1863

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 153 LPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPG--PPTVLALHNGNGGDSGEDLLF 209
           LPV       P+       L+V+ GS V   V+V G  PP V+ LHNGN     ED  F
Sbjct: 613 LPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHF 671


>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
          Length = 1914

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 153 LPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPG--PPTVLALHNGNGGDSGEDLLF 209
           LPV       P+       L+V+ GS V   V+V G  PP V+ LHNGN     ED  F
Sbjct: 613 LPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHF 671


>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
          Length = 1794

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 153 LPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPG--PPTVLALHNGNGGDSGEDLLF 209
           LPV       P+       L+V+ GS V   V+V G  PP V+ LHNGN     ED  F
Sbjct: 544 LPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHF 602


>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
          Length = 1845

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 153 LPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPG--PPTVLALHNGNGGDSGEDLLF 209
           LPV       P+       L+V+ GS V   V+V G  PP V+ LHNGN     ED  F
Sbjct: 544 LPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQVSGNPPPEVIWLHNGNEIQESEDFHF 602


>gi|122937345 myosin VB [Homo sapiens]
          Length = 1848

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 305  IVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELE--HLQYKVLQEREN 362
            +  STY+  V  L  E +H +  PGE+  +   +Q ++ SLR EL+  H + K+L++  +
Sbjct: 950  VTTSTYTMEVERLKKELVHYQQSPGEDTSL--RLQEEVESLRTELQRAHSERKILEDAHS 1007

Query: 363  YQQ 365
             ++
Sbjct: 1008 REK 1010


>gi|51873049 hypothetical protein LOC8603 [Homo sapiens]
          Length = 1224

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 330  EELKINQEMQNK--ISSLRNELEHLQYKVLQERENYQQSSQSSKAKSAVPSFGINDKFTL 387
            EE K+N    NK  ++ +++E  +           +QQ+S+   A+S  P  G N K   
Sbjct: 1098 EERKVNSNNNNKKQLNHIKDEKSNPTPMEPTSPGEHQQNSKLVLAESPQPK-GKNKKNKK 1156

Query: 388  NKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVDKNSAVVSF 429
             K D        V  +ID+V +  D+ +D +D+D+    V +
Sbjct: 1157 KKGD-------RVNNSIDDVFLPKDIDLDSVDMDETEREVEY 1191


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 305  IVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHL---QYKVLQERE 361
            + +S   G + G   E    E    E+  I   ++ ++    N L+ L   Q ++ +ERE
Sbjct: 1915 VELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERE 1974

Query: 362  NYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVD 421
               +  ++ KA++     G  ++  L + +      LEVQ   + V       +  L++D
Sbjct: 1975 LLSRQKEAMKAEA-----GPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEID 2029

Query: 422  KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQ 464
                V  F   + E N   +    + QA   +LE   + ++ Q
Sbjct: 2030 VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQ 2072


>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
          Length = 3899

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 305  IVVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHL---QYKVLQERE 361
            + +S   G + G   E    E    E+  I   ++ ++    N L+ L   Q ++ +ERE
Sbjct: 1915 VELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERE 1974

Query: 362  NYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVD 421
               +  ++ KA++     G  ++  L + +      LEVQ   + V       +  L++D
Sbjct: 1975 LLSRQKEAMKAEA-----GPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEID 2029

Query: 422  KNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQ 464
                V  F   + E N   +    + QA   +LE   + ++ Q
Sbjct: 2030 VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQ 2072


>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
          Length = 976

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 23/125 (18%)

Query: 545 FQNTFLDTQLESTYRKGEGVFKSDNIST--ISILKDVLSKEATKRKINLNISYEINEVSV 602
           F N  +  +LE   ++ + + K +N +    ++LK+  ++ A K K      YE      
Sbjct: 153 FGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTK-----KYEYEREET 207

Query: 603 KHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEE----ADHLQE 658
           +     ++  +E         ++I A +EL++   N+     E H  L+E      HL++
Sbjct: 208 RQVYMDLNNNIE---------KMITAFEELRVQAENSRL---EMHFKLKEDYEKIQHLEQ 255

Query: 659 EYKKQ 663
           EYKK+
Sbjct: 256 EYKKE 260


>gi|50980309 UTP15, U3 small nucleolar ribonucleoprotein, homolog
           [Homo sapiens]
          Length = 518

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 13/107 (12%)

Query: 204 GEDLLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKDLLVGRDD 263
           G  L+ G+ DG + L  I+   P+R++E       G    + + D   D    ++ G DD
Sbjct: 92  GRLLVAGSEDGGVQLFDISGRAPLRQFE-------GHTKAVHTVDFTADKY-HVVSGADD 143

Query: 264 GMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKDSYDEIVVSTY 310
             V+++   N+ E +L F     E    ++ GC  K + D  +  +Y
Sbjct: 144 YTVKLWDIPNSKE-ILTF----KEHSDYVRCGCASKLNPDLFITGSY 185


>gi|9910266 kinesin family member 15 [Homo sapiens]
          Length = 1388

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 285 LSESVTSIQGGCVGKDSY---DEIVVSTYSGWVTGLTTEPIHKESG----PGEELKINQE 337
           L E VT ++   + K+ +   ++++V      +  L  E +HKES     P E+ ++  E
Sbjct: 435 LIEKVTQLEDLTLKKEKFIQSNKMIVKFREDQIIRL--EKLHKESRGGFLPEEQDRLLSE 492

Query: 338 MQNKISSLRNELEHLQYKVLQERENYQQSSQSSKAKSAVP 377
           ++N+I +LR ++EH         EN+    ++ + +   P
Sbjct: 493 LRNEIQTLREQIEHHPRVAKYAMENHSLREENRRLRLLEP 532


>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
          Length = 1113

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 325 ESGPGEELKINQEMQNKISSLRNELEHLQYKVLQERENYQQSSQSSKAKSAVPSFGINDK 384
           E   G  +K+   MQ +I++ R +++ LQ K+    E    +++         S    + 
Sbjct: 719 EGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQEL 778

Query: 385 FTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVDKNSAVVSFSSCDSESNDNFLLAT 444
            T+  +    +  LEV  + +  L +    +  ++V  + A + F+ C            
Sbjct: 779 STVATEKNKMAGELEVLRSQERRLKEK---VTNMEVALDKASLQFAECQD--------II 827

Query: 445 YRCQADTTRLELK----IRSIEGQYGTLQAYVTPRIQPKTCQVRQYHIKPLSLHQRTHFI 500
            R + ++ RL+L+    I+ ++G   T  + + PR+       R +   P S    +   
Sbjct: 828 QRQEQESVRLKLQHTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQSTASFLS 887

Query: 501 DHDRPMNTL 509
            H    NTL
Sbjct: 888 HHSTKANTL 896


>gi|186928847 cirhin [Homo sapiens]
          Length = 686

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 46/193 (23%), Positives = 68/193 (35%), Gaps = 49/193 (25%)

Query: 175 LQGSDVMYAVEVPGPPTVLALHNGNGGDSGEDLLFGTSDGKLALIQITTSKPVRKWEIQN 234
           LQ  ++ YA++  G P    + +     SG  LL G  DG + L QIT  K   +     
Sbjct: 88  LQALNIKYAMDAFGGP----IWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDR 143

Query: 235 EKKR---------------GGILCIDSFDI-VGDGVKDLLVGR----------------- 261
           +K R               G I  I  FD+  G  V  ++V R                 
Sbjct: 144 QKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAF 203

Query: 262 -DDGMV-------EVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKDSYDEIVVSTYSGW 313
             DG +       +V  +D+A   +++   + +  V SI       D  D  VV T  G 
Sbjct: 204 LSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSI----AVADQEDSFVVGTAEGT 259

Query: 314 VTGLTTEPIHKES 326
           V      P+   S
Sbjct: 260 VFHFQLVPVTSNS 272


>gi|116812628 coiled-coil domain containing 67 [Homo sapiens]
          Length = 604

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 306 VVSTYSGWVTGLTTEPIHKESGPGEELKINQEMQNKISSLRNELEHLQYKVLQERENYQQ 365
           +   Y G +  L  +   K +   E+L+++Q  QNK+   R EL HL+ ++  E  N  Q
Sbjct: 85  MTQNYEGQLQSLKAQ-FSKLTNNFEKLRLHQMKQNKVP--RKELPHLKEEIPFELSNLNQ 141

Query: 366 SSQSSKAKS 374
             +  +AKS
Sbjct: 142 KLEEFRAKS 150


>gi|71051596 coiled-coil domain containing 7 [Homo sapiens]
          Length = 486

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 590 NLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCI 649
           NL +S E+ E   KH  KLIH K+E  +L +           L I    T  L+PE   I
Sbjct: 28  NLPLSPELKE---KHNAKLIHDKIEPMVLRSPPTGESILRYALPIPSSKTKNLLPEDEMI 84

Query: 650 LEEADHLQEEYKKQPAHLERLYG 672
            +   HL    K   + LE  YG
Sbjct: 85  GKIIKHL----KMVVSTLEETYG 103


>gi|37059792 coiled-coil domain containing 7 [Homo sapiens]
          Length = 486

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 590 NLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCI 649
           NL +S E+ E   KH  KLIH K+E  +L +           L I    T  L+PE   I
Sbjct: 28  NLPLSPELKE---KHNAKLIHDKIEPMVLRSPPTGESILRYALPIPSSKTKNLLPEDEMI 84

Query: 650 LEEADHLQEEYKKQPAHLERLYG 672
            +   HL    K   + LE  YG
Sbjct: 85  GKIIKHL----KMVVSTLEETYG 103


>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 1941

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 203  SGEDLLFGTSDGKLALIQITTSKPVRKWE------IQNEKKRGGILCIDSFDIVGDGVKD 256
            SG  ++ G S G + L+   T   +R W       +Q +   G +L   S D        
Sbjct: 1797 SGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSSD------HS 1850

Query: 257  LLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVG 298
            L V ++      + + +A++P+  FD   SE VT      +G
Sbjct: 1851 LTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVSNKIG 1892


>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 2240

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 203  SGEDLLFGTSDGKLALIQITTSKPVRKWE------IQNEKKRGGILCIDSFDIVGDGVKD 256
            SG  ++ G S G + L+   T   +R W       +Q +   G +L   S D        
Sbjct: 2096 SGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSSD------HS 2149

Query: 257  LLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVG 298
            L V ++      + + +A++P+  FD   SE VT      +G
Sbjct: 2150 LTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVSNKIG 2191


>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
          Length = 1941

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 203  SGEDLLFGTSDGKLALIQITTSKPVRKWE------IQNEKKRGGILCIDSFDIVGDGVKD 256
            SG  ++ G S G + L+   T   +R W       +Q +   G +L   S D        
Sbjct: 1797 SGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSSD------HS 1850

Query: 257  LLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVG 298
            L V ++      + + +A++P+  FD   SE VT      +G
Sbjct: 1851 LTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVSNKIG 1892


>gi|21735562 mitogen-activated protein kinase kinase kinase 7
           isoform B [Homo sapiens]
          Length = 606

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 590 NLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCI 649
           N   S  + E   K   + +  + E  LLL +K +L+  L + +  + NT+ L+ E+  +
Sbjct: 515 NSKESMAVFEQHCKMAQEYMKVQTEIALLLQRKQELVAELDQDEKDQQNTSRLVQEHKKL 574

Query: 650 LEEADHLQEEYKKQPAHLE 668
           L+E   L   Y++    LE
Sbjct: 575 LDENKSLSTYYQQCKKQLE 593


>gi|4507361 mitogen-activated protein kinase kinase kinase 7 isoform
           A [Homo sapiens]
          Length = 579

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 21/79 (26%), Positives = 38/79 (48%)

Query: 590 NLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCI 649
           N   S  + E   K   + +  + E  LLL +K +L+  L + +  + NT+ L+ E+  +
Sbjct: 488 NSKESMAVFEQHCKMAQEYMKVQTEIALLLQRKQELVAELDQDEKDQQNTSRLVQEHKKL 547

Query: 650 LEEADHLQEEYKKQPAHLE 668
           L+E   L   Y++    LE
Sbjct: 548 LDENKSLSTYYQQCKKQLE 566


>gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit
           [Homo sapiens]
          Length = 1137

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 563 GVFKSDNISTISILKDVLSKEATKRKINLNISYEINEVSVKHTLKLIHPKLEYQLLLAKK 622
           G+   D+  T  ++ DVL +   + ++N N++Y I    V HT+  I+PK E   LL K 
Sbjct: 282 GLLGKDDQRTSELMYDVLDESLRRAELNHNVTYAILFECV-HTVYSIYPKSE---LLEKA 337

Query: 623 VQLI 626
            + I
Sbjct: 338 AKCI 341


>gi|52485941 integrin, alpha 9 precursor [Homo sapiens]
          Length = 1035

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 9/38 (23%)

Query: 239 GGILCIDSFDIVGDGVKDLLVG-------RDDGMVEVY 269
           G  LC  + D+ GDG+ DLLVG       RD+G V VY
Sbjct: 305 GSSLC--AVDLNGDGLSDLLVGAPMFSEIRDEGQVTVY 340


>gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens]
          Length = 224

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 576 LKDVLSK--EATKRKINLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALK--- 630
           +K++ +K  +  K K  L   +E  E   +H   L   K E  LLL +K+  ++ L+   
Sbjct: 14  IKEIRNKTLQMEKIKARLKAEFEALESEERH---LKEYKQEMDLLLQEKMAHVEELRLIH 70

Query: 631 -ELQIHEGNTNFLIPEYHCILEEADHLQEEYKKQPAHLERL 670
            ++ + E        + + +LE    L +EYK    H++ L
Sbjct: 71  ADINVMENTIKQSENDLNKLLESTRRLHDEYKPLKEHVDAL 111


>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
           [Homo sapiens]
          Length = 807

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 325 ESGPGEELKINQEMQNKISSLRNELEHLQYKVLQERENYQQSSQSSK 371
           + G  E+ K   + QNK ++L NE E  + ++++E+E  +Q  + +K
Sbjct: 176 KKGKEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKEPPKQGKEKAK 222


>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
           [Homo sapiens]
          Length = 845

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 325 ESGPGEELKINQEMQNKISSLRNELEHLQYKVLQERENYQQSSQSSK 371
           + G  E+ K   + QNK ++L NE E  + ++++E+E  +Q  + +K
Sbjct: 176 KKGKEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKEPPKQGKEKAK 222


>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
           sapiens]
          Length = 796

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 24/148 (16%)

Query: 325 ESGPGEELKINQEMQNKISS---LRNELEHLQYKVLQERENYQQSSQSSKAKSAVPSFGI 381
           E+   E+L +   +Q   ++   +  E+E++Q       EN+ Q  +++K+++++    +
Sbjct: 598 ETVKDEKLNLETTLQESTAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSL 657

Query: 382 NDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVDKNSAVVSFSSCDSESNDNFL 441
           ++   + K+    S ++ ++T  DN +++ ++                    S+ N  F 
Sbjct: 658 SE---IGKECEMLSKMV-METKTDNQILKEEL-----------------KKHSQENIKFE 696

Query: 442 LATYRCQADTTRLELKIRSIEGQYGTLQ 469
            +  R   D   LE  +RSIE +  TL+
Sbjct: 697 NSISRLTEDKILLENYVRSIENERDTLE 724


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,878,493
Number of Sequences: 37866
Number of extensions: 1116140
Number of successful extensions: 3176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3140
Number of HSP's gapped (non-prelim): 61
length of query: 672
length of database: 18,247,518
effective HSP length: 109
effective length of query: 563
effective length of database: 14,120,124
effective search space: 7949629812
effective search space used: 7949629812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.