Guide to the Human Genome
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Name: ITGA9 Sequence: fasta or formatted (1035aa) NCBI GI: 52485941
Description:

integrin, alpha 9 precursor

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         71           2
 C cysteine            2.2         23           1
 D aspartate           5.4         56           2
 E glutamate           6.4         66           3
 F phenylalanine       4.8         50           2
 G glycine             8.5         88           2
 H histidine           2.6         27           1
 I isoleucine          5.9         61           2
 K lysine              5.2         54           3
 L leucine             8.6         89           3
 M methionine          2.6         27           1
 N asparagine          4.3         45           1
 P proline             4.5         47           2
 Q glutamine           3.6         37           2
 R arginine            4.5         47           3
 S serine              7.2         75           3
 T threonine           4.4         46           2
 V valine              7.8         81           2
 W tryptophan          1.0         10           1
 Y tyrosine            3.4         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin, alpha 9 precursor 
ITGA4                 0.372   integrin alpha 4 precursor 
ITGA7                 0.143   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.142   integrin alpha 7 isoform 1 precursor 
ITGA6                 0.140   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA6                 0.139   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA5                 0.134   integrin alpha 5 precursor 
ITGA8                 0.133   integrin, alpha 8 
ITGA7                 0.122   integrin alpha 7 isoform 3 
ITGA3                 0.121   integrin alpha 3 isoform a precursor 
ITGA3                 0.118   integrin alpha 3 isoform b precursor 
ITGAV                 0.118   integrin alpha-V isoform 1 precursor 
ITGA11                0.109   integrin, alpha 11 precursor 
ITGAV                 0.108   integrin alpha-V isoform 2 
ITGA2B                0.108   integrin alpha 2b preproprotein 
ITGA1                 0.107   integrin, alpha 1 precursor 
ITGAV                 0.104   integrin alpha-V isoform 3 precursor 
ITGA10                0.101   integrin, alpha 10 precursor 
ITGAX                 0.092   integrin alpha X precursor 
ITGA2                 0.092   integrin alpha 2 precursor 
ITGAL                 0.092   integrin alpha L isoform b precursor 
ITGAL                 0.091   integrin alpha L isoform a precursor 
ITGAM                 0.091   integrin alpha M isoform 2 precursor 
ITGAM                 0.089   integrin alpha M isoform 1 precursor 
ITGAE                 0.088   integrin, alpha E precursor 
ITGAD                 0.085   integrin, alpha D precursor 
GPLD1                 0.016   glycosylphosphatidylinositol specific phospholipase ...
LOC100289853          0.015   PREDICTED: hypothetical protein XP_002347690 
SLC6A12               0.005   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.005   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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