Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FCHSD1 Sequence: fasta or formatted (690aa) NCBI GI: 28875786
Description:

FCH and double SH3 domains 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         68           2
 C cysteine            0.7          5           1
 D aspartate           4.9         34           2
 E glutamate          10.1         70           2
 F phenylalanine       2.9         20           1
 G glycine             6.7         46           2
 H histidine           2.0         14           1
 I isoleucine          1.6         11           1
 K lysine              3.2         22           1
 L leucine            11.9         82           2
 M methionine          1.0          7           2
 N asparagine          1.3          9           1
 P proline             8.1         56           6
 Q glutamine           8.1         56           2
 R arginine            8.4         58           2
 S serine              7.0         48           2
 T threonine           3.8         26           2
 V valine              5.2         36           2
 W tryptophan          1.3          9           1
 Y tyrosine            1.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FCH and double SH3 domains 1 
FCHSD2                0.312   FCH and double SH3 domains 2 
SRGAP1                0.042   SLIT-ROBO Rho GTPase activating protein 1 
SRGAP3                0.035   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
TRIP10                0.035   thyroid hormone receptor interactor 10 
SRGAP3                0.035   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
C1orf113              0.033   SH3 domain-containing protein C1orf113 isoform 1 [H...
ARHGAP4               0.032   Rho GTPase activating protein 4 
SRGAP2                0.032   SLIT-ROBO Rho GTPase activating protein 2 isoform a...
SRGAP2                0.032   SLIT-ROBO Rho GTPase activating protein 2 isoform b...
ITSN1                 0.027   intersectin 1 isoform ITSN-s 
ITSN1                 0.027   intersectin 1 isoform ITSN-l 
FES                   0.026   feline sarcoma oncogene isoform 3 
FES                   0.026   feline sarcoma oncogene isoform 1 
NCK1                  0.025   NCK adaptor protein 1 
CD2AP                 0.025   CD2-associated protein 
SH3KBP1               0.024   SH3-domain kinase binding protein 1 isoform a 
FNBP1L                0.024   formin binding protein 1-like isoform 2 
FNBP1L                0.023   formin binding protein 1-like isoform 1 
BCAR1                 0.023   breast cancer anti-estrogen resistance 1 
NCK2                  0.022   NCK adaptor protein 2 isoform A 
NCK2                  0.022   NCK adaptor protein 2 isoform A 
SH3D19                0.022   SH3 domain containing 19 isoform c 
SH3D19                0.022   SH3 domain containing 19 isoform b 
SH3D19                0.022   SH3 domain containing 19 isoform a 
LOC100133063          0.022   PREDICTED: similar to breast cancer anti-estrogen r...
FNBP1                 0.022   formin binding protein 1 
SORBS3                0.021   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.021   sorbin and SH3 domain containing 3 isoform 2 
C6orf132              0.021   PREDICTED: chromosome 6 open reading frame 132 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press