Guide to the Human Genome
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Name: MT1M Sequence: fasta or formatted (61aa) NCBI GI: 28866966
Description:

metallothionein 1M

Referenced in:

Metallothioneins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          4           1
 C cysteine           32.8         20           2
 D aspartate           1.6          1           1
 E glutamate           3.3          2           1
 F phenylalanine       0.0          0           0
 G glycine             8.2          5           1
 H histidine           1.6          1           1
 I isoleucine          0.0          0           0
 K lysine             11.5          7           2
 L leucine             1.6          1           1
 M methionine          1.6          1           1
 N asparagine          3.3          2           1
 P proline             3.3          2           1
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine             11.5          7           1
 T threonine           8.2          5           2
 V valine              4.9          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   metallothionein 1M 
MT1E                  0.866   metallothionein 1E 
MT1B                  0.866   metallothionein 1B 
MT1A                  0.850   metallothionein 1A 
MT1G                  0.850   metallothionein 1G 
MT1F                  0.850   metallothionein 1F 
MT2A                  0.835   metallothionein 2A 
MT1X                  0.835   metallothionein 1X 
MT1H                  0.835   metallothionein 1H 
MT3                   0.591   metallothionein 3 
MT4                   0.567   metallothionein 4 
KRTAP5-3              0.181   keratin associated protein 5-3 
KRTAP5-9              0.173   keratin associated protein 5-9 
KRTAP5-7              0.173   keratin associated protein 5-7 
KRTAP5-8              0.157   keratin associated protein 5-8 
KRTAP4-3              0.142   keratin associated protein 4-3 
KRTAP17-1             0.142   keratin associated protein 17-1 
KRTAP5-10             0.142   keratin associated protein 5-10 
KRTAP5-1              0.134   keratin associated protein 5-1 
KRTAP5-11             0.134   keratin associated protein 5-11 
KRTAP5-4              0.134   keratin associated protein 5-4 
KRTAP5-2              0.134   keratin associated protein 5-2 
KRTAP5-5              0.126   keratin associated protein 5-5 
KRTAP4-5              0.126   keratin associated protein 4-5 
LOC729815             0.118   PREDICTED: hypothetical protein 
KRTAP5-6              0.118   keratin associated protein 5-6 
KRTAP4-8              0.118   PREDICTED: keratin associated protein 4-8 
KRTAP4-4              0.118   keratin associated protein 4.4 
KRTAP10-9             0.118   keratin associated protein 10-9 
KRTAP9-2              0.118   keratin associated protein 9.2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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