Guide to the Human Genome
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Name: R3HDM2 Sequence: fasta or formatted (976aa) NCBI GI: 162951884
Description:

R3H domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         47           2
 C cysteine            0.9          9           1
 D aspartate           4.2         41           2
 E glutamate           4.3         42           3
 F phenylalanine       2.3         22           1
 G glycine             7.0         68           5
 H histidine           1.8         18           1
 I isoleucine          3.3         32           2
 K lysine              4.8         47           2
 L leucine             7.9         77           2
 M methionine          3.1         30           2
 N asparagine          4.5         44           3
 P proline             9.4         92           2
 Q glutamine          11.0        107          10
 R arginine            4.9         48           2
 S serine             12.6        123           4
 T threonine           5.3         52           2
 V valine              4.9         48           3
 W tryptophan          0.3          3           1
 Y tyrosine            2.7         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   R3H domain containing 2 
R3HDM1                0.442   R3H domain containing 1 
ARPP-21               0.270   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
TSC22D1               0.025   TSC22 domain family, member 1 isoform 1 
MED15                 0.025   mediator complex subunit 15 isoform a 
GLTSCR1               0.025   glioma tumor suppressor candidate region gene 1 [Ho...
MED15                 0.024   mediator complex subunit 15 isoform b 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
MAML3                 0.021   mastermind-like 3 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
CREBBP                0.021   CREB binding protein isoform b 
CREBBP                0.021   CREB binding protein isoform a 
WDR33                 0.020   WD repeat domain 33 isoform 1 
NCOA6                 0.020   nuclear receptor coactivator 6 
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ATN1                  0.019   atrophin-1 
ATN1                  0.019   atrophin-1 
EP300                 0.019   E1A binding protein p300 
MAGEC1                0.019   melanoma antigen family C, 1 
BCL9L                 0.019   B-cell CLL/lymphoma 9-like 
RERE                  0.018   atrophin-1 like protein isoform b 
RERE                  0.018   atrophin-1 like protein isoform a 
RERE                  0.018   atrophin-1 like protein isoform a 
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.018   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ARID1A                0.018   AT rich interactive domain 1A isoform a 
ARID1A                0.018   AT rich interactive domain 1A isoform b 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
BRD4                  0.018   bromodomain-containing protein 4 isoform long 
RBM33                 0.018   RNA binding motif protein 33 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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