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Search of human proteins with 27735089
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27735089 LSM11, U7 small nuclear RNA associated [Homo
sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens] 720 0.0
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 41 0.002
gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens] 40 0.002
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 40 0.003
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 40 0.003
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 40 0.003
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 40 0.003
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 39 0.006
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 39 0.006
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 0.009
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 39 0.009
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 0.009
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 39 0.009
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 39 0.009
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 39 0.009
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 39 0.009
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 0.009
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 0.009
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 38 0.012
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 38 0.012
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 38 0.012
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.012
gi|89057646 PREDICTED: hypothetical protein [Homo sapiens] 38 0.016
gi|89056946 PREDICTED: hypothetical protein [Homo sapiens] 38 0.016
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 38 0.016
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 38 0.016
gi|89257348 homeo box HB9 [Homo sapiens] 38 0.016
>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
Length = 360
Score = 720 bits (1859), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE
Sbjct: 1 MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
Query: 61 SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK 120
SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK
Sbjct: 61 SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK 120
Query: 121 EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR 180
EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR
Sbjct: 121 EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR 180
Query: 181 GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD 240
GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD
Sbjct: 181 GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD 240
Query: 241 SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR 300
SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR
Sbjct: 241 SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR 300
Query: 301 TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ 360
TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ
Sbjct: 301 TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ 360
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 77 ARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAGR----- 131
ARG G G P GR R PD+PA RRL++ + DG G R
Sbjct: 9 ARGTLQGGGGGGIPAGGGRVHRGPDSPAGQVP----TRRLLLLRGPQDGGPGRRREEAST 64
Query: 132 --RGPGRSRKAPR 142
RGPG S APR
Sbjct: 65 ASRGPGPSLLAPR 77
>gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]
Length = 799
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 77 ARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAGR----- 131
ARG G G P GR R PD+PA RRL++ + DG G R
Sbjct: 9 ARGTLQGGGGGGIPAGGGRVHRGPDSPAGQVP----TRRLLLPRGPQDGGPGRRREEAST 64
Query: 132 --RGPGRSRKAPR 142
RGPG S APR
Sbjct: 65 ASRGPGPSLFAPR 77
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R+S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R+S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R+S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R+S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 39.3 bits (90), Expect = 0.006
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 6 RGARSAGAGSPARPP-----SPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
RGAR G R P LDV++ L PR P P P F
Sbjct: 80 RGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLF------P 133
Query: 61 SFLRTGVRG-GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPA 104
+ L R G GR A AG+G P PGP R R RP A A
Sbjct: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 39.3 bits (90), Expect = 0.006
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 6 RGARSAGAGSPARPP-----SPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
RGAR G R P LDV++ L PR P P P F
Sbjct: 80 RGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLF------P 133
Query: 61 SFLRTGVRG-GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPA 104
+ L R G GR A AG+G P PGP R R RP A A
Sbjct: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 39.3 bits (90), Expect = 0.006
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 6 RGARSAGAGSPARPP-----SPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
RGAR G R P LDV++ L PR P P P F
Sbjct: 80 RGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLF------P 133
Query: 61 SFLRTGVRG-GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPA 104
+ L R G GR A AG+G P PGP R R RP A A
Sbjct: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.009
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/141 (31%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 5 ERGARSAGAGSPARP-------PSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVA 57
E GA G ARP PS R +L L P L P+P P +
Sbjct: 133 EGGALHGRPGRDARPWRLLSACPSGRPRPRPLPLPLMLMLMLPTLQPLPPPGSA------ 186
Query: 58 EYESFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPS----GRTRRRPDAPA-PDPERIQR 112
R G GRG A A + A PGPS T P +PA P PE ++
Sbjct: 187 -------RRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPACPGPE-MET 238
Query: 113 LRRLMVAKEEGDG-AAGAGRR 132
+ R A+ G G +GAGRR
Sbjct: 239 ILRNPPARSPGAGWGSGAGRR 259
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.009
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/141 (31%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 5 ERGARSAGAGSPARP-------PSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVA 57
E GA G ARP PS R +L L P L P+P P +
Sbjct: 133 EGGALHGRPGRDARPWRLLSACPSGRPRPRPLPLPLMLMLMLPTLQPLPPPGSA------ 186
Query: 58 EYESFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPS----GRTRRRPDAPA-PDPERIQR 112
R G GRG A A + A PGPS T P +PA P PE ++
Sbjct: 187 -------RRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPACPGPE-MET 238
Query: 113 LRRLMVAKEEGDG-AAGAGRR 132
+ R A+ G G +GAGRR
Sbjct: 239 ILRNPPARSPGAGWGSGAGRR 259
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 38.5 bits (88), Expect = 0.009
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 72 RGRGRARGAAAGSGVPAAPGPS----GRTRRRPDAPAPDPE------RIQRLRRLMVAKE 121
RG G + + + G PAAP P GR R++ P +P R + + +K
Sbjct: 4 RGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
Query: 122 EGDGAAGAGRRGP-GRSRKAPRNVLTRMPLHE 152
A G + P GR RK P+ V+ + P E
Sbjct: 64 AQKKAEATGEKRPRGRPRKWPQQVVQKKPAQE 95
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 38.5 bits (88), Expect = 0.009
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 72 RGRGRARGAAAGSGVPAAPGPSGRT-RRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAG 130
RGRGRARG AG+ P S T ++RP DPE + ++ + + DG
Sbjct: 630 RGRGRARGVFAGTN--TGPNNSNTTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWA 687
Query: 131 RRGPGR 136
+RG GR
Sbjct: 688 KRGRGR 693
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 264 VWGR--ADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS---VGGTFSRATT 318
VW R + + R RSRS +S R SRS S R++R+ SS +S++
Sbjct: 96 VWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPV 155
Query: 319 LSRGQSRKKKRK 330
R S++K+ K
Sbjct: 156 SKRRGSQEKQTK 167
Score = 28.5 bits (62), Expect = 9.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 274 SHKRSRSVPSSLQASAREESRSELSGRTTRTDGSSVGGTFSRATTLSRGQSRKKKR 329
S+ RS S S ++ + SRS R R S T+SR+ + R SR +R
Sbjct: 4 SNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRMYSRDYRR 59
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 38.5 bits (88), Expect = 0.009
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 72 RGRGRARGAAAGSGVPAAPGPSGRT-RRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAG 130
RGRGRARG AG+ P S T ++RP DPE + ++ + + DG
Sbjct: 803 RGRGRARGVFAGTN--TGPNNSNTTFQKRPKEEEWDPEYTPKSKKYFLHDDRDDGVDYWA 860
Query: 131 RRGPGR 136
+RG GR
Sbjct: 861 KRGRGR 866
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 264 VWGR--ADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS---VGGTFSRATT 318
VW R + + R RSRS +S R SRS S R++R+ SS +S++
Sbjct: 96 VWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPV 155
Query: 319 LSRGQSRKKKRK 330
R S++K+ K
Sbjct: 156 SKRRGSQEKQTK 167
Score = 28.5 bits (62), Expect = 9.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 274 SHKRSRSVPSSLQASAREESRSELSGRTTRTDGSSVGGTFSRATTLSRGQSRKKKR 329
S+ RS S S ++ + SRS R R S T+SR+ + R SR +R
Sbjct: 4 SNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYSSRSRSRTYSRSRSRDRMYSRDYRR 59
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.009
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.009
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
Query: 200 DVDETYRKPVLGKAYERDSSLTL----TRLFDRL--KLQDSSK-----KEADSKSAVEDS 248
D+ +K +LG S T T+ DR K +D SK KE+ K D
Sbjct: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK 61
Query: 249 TLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSS 308
T R S +S + + GS + S S +SA S S + R++ + SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
Query: 309 VGGTFSRATTLSRGQSRKKKRKPKVDYQQ 337
+ SR +R +SR K + PK D ++
Sbjct: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKE 150
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 38.1 bits (87), Expect = 0.012
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 68 RGGG---RGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPE-RIQRLRRLMVAKEEG 123
RGG + AR AAA +G P +PGP R P P P R RL A+
Sbjct: 49 RGGATVTKPAASARSAAAATGFPCSPGP--RAPPPPSRPMGAPACRRHRLLSRRAAQSTN 106
Query: 124 DGAAGAGRR----GPGRSRKAPR 142
G AG GRR G G +R A R
Sbjct: 107 RGQAGGGRRAHGGGVGSARLARR 129
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 38.1 bits (87), Expect = 0.012
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 68 RGGG---RGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPE-RIQRLRRLMVAKEEG 123
RGG + AR AAA +G P +PGP R P P P R RL A+
Sbjct: 49 RGGATVTKPAASARSAAAATGFPCSPGP--RAPPPPSRPMGAPACRRHRLLSRRAAQSTN 106
Query: 124 DGAAGAGRR----GPGRSRKAPR 142
G AG GRR G G +R A R
Sbjct: 107 RGQAGGGRRAHGGGVGSARLARR 129
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 38.1 bits (87), Expect = 0.012
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 68 RGGG---RGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPE-RIQRLRRLMVAKEEG 123
RGG + AR AAA +G P +PGP R P P P R RL A+
Sbjct: 49 RGGATVTKPAASARSAAAATGFPCSPGP--RAPPPPSRPMGAPACRRHRLLSRRAAQSTN 106
Query: 124 DGAAGAGRR----GPGRSRKAPR 142
G AG GRR G G +R A R
Sbjct: 107 RGQAGGGRRAHGGGVGSARLARR 129
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 38.1 bits (87), Expect = 0.012
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 64 RTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEG 123
R G RGGGRGRGR + A G GV GR R R R + +G
Sbjct: 51 REGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG--DG 108
Query: 124 DGAAGAGRRGPGRSRKAP 141
G G G G G R+ P
Sbjct: 109 GGCGGGGSGGGGAPRREP 126
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 68 RGGGRGRGRARGAAAGSGVPA--------APGPSGRTRRRPDAPAPDPERIQRLRRLMVA 119
RG GRGRGR R + GSG+ G G RR P P P
Sbjct: 86 RGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP-VPFPS------------- 131
Query: 120 KEEGDGAAGAGRRGPGRSRKAPRNVLTRMP 149
G+AG G RGP + R +P
Sbjct: 132 -----GSAGPGPRGPRATESGKRMDCPALP 156
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 38.1 bits (87), Expect = 0.012
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 64 RTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEG 123
R G RGGGRGRGR + A G GV GR R R R + +G
Sbjct: 51 REGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG--DG 108
Query: 124 DGAAGAGRRGPGRSRKAP 141
G G G G G R+ P
Sbjct: 109 GGCGGGGSGGGGAPRREP 126
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 68 RGGGRGRGRARGAAAGSGVPA--------APGPSGRTRRRPDAPAPDPERIQRLRRLMVA 119
RG GRGRGR R + GSG+ G G RR P P P
Sbjct: 86 RGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP-VPFPS------------- 131
Query: 120 KEEGDGAAGAGRRGPGRSRKAPRNVLTRMP 149
G+AG G RGP + R +P
Sbjct: 132 -----GSAGPGPRGPRATESGKRMDCPALP 156
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.1 bits (87), Expect = 0.012
Identities = 35/129 (27%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 7 GARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYESFLRTG 66
GA GS PP S D A A PP +P + +
Sbjct: 322 GAHGGRPGSAHSPPDKPSSPSPRVRDKAAA--AAPTPPARGKESPSPRSAPSSQGRGGRA 379
Query: 67 VRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGDGA 126
G GR R R R +AP GR R RP P + R A+ D
Sbjct: 380 AGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSR------ARSSSDSG 433
Query: 127 AGAGRRGPG 135
+G G GPG
Sbjct: 434 SGRGAPGPG 442
Score = 29.3 bits (64), Expect = 5.7
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 65 TGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGD 124
+G R G G GR A + P++P P R R + A AP P + +
Sbjct: 317 SGQRSGAHG-GRPGSAHSPPDKPSSPSP--RVRDKAAAAAPTPPARGKESPSPRSAPSSQ 373
Query: 125 GAAGAGRRGPGRSRKAPR 142
G G G GR R+ R
Sbjct: 374 GRGGRAAGGAGRRRRRRR 391
>gi|89057646 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 37.7 bits (86), Expect = 0.016
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 72 RGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAG 130
R R A A +G APG S R RR AP P +R+R + E G GAAGAG
Sbjct: 117 RKLSRRWSAPAAAGQRPAPG-SRRARRAARAPPPPAAGSRRVRLQLATLEAGPGAAGAG 174
>gi|89056946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 37.7 bits (86), Expect = 0.016
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 72 RGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKEEGDGAAGAG 130
R R A A +G APG S R RR AP P +R+R + E G GAAGAG
Sbjct: 117 RKLSRRWSAPAAAGQRPAPG-SRRARRAARAPPPPAAGSRRVRLQLATLEAGPGAAGAG 174
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 37.7 bits (86), Expect = 0.016
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 232 QDSSKKEADSKSAVEDSTLSRYS------QTSTWKLASVWGRADTGRGSHKRSRS---VP 282
+D SK + D +D+ LS+Y+ + S K ++ R+ + R SH RS S P
Sbjct: 162 EDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKS-RSSHSRSSSRSSSP 220
Query: 283 SSLQASAREESRSELS----GRTTRTDGSSVGGTFSRATTLS-RGQSRKKKR 329
SS ++ +R SRS S R++ + S G+ SR+++ S RG S +KR
Sbjct: 221 SSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Score = 35.0 bits (79), Expect = 0.10
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 200 DVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD--SKSAVEDSTLSRYSQTS 257
D DE K L + + D + D + +DS+KK+++ S+S S S++S
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 258 TWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSSVGGTFSRAT 317
+ + R+ + S +SRS SS + S S+S S R+ R S ++S ++
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278
Query: 318 TLSRGQSRKKKR 329
+ S ++RK+ R
Sbjct: 279 S-SPERNRKRSR 289
Score = 33.9 bits (76), Expect = 0.23
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 231 LQDSSKKEADSKSAVEDSTLSRY----------SQTSTWKLASVWGRADTGRGSHKRSRS 280
L++ KE++ + ED LS+Y + S + L + + S++RSRS
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS 204
Query: 281 VPSSLQASAREESRSELSGRT---TRTDGSSVGGTFSRATTLSRGQSRKKKRK 330
S + + S S S R+ +R+ SS + SR+++ R +SR K +
Sbjct: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSR 257
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 37.7 bits (86), Expect = 0.016
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 232 QDSSKKEADSKSAVEDSTLSRYS------QTSTWKLASVWGRADTGRGSHKRSRS---VP 282
+D SK + D +D+ LS+Y+ + S K ++ R+ + R SH RS S P
Sbjct: 162 EDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKS-RSSHSRSSSRSSSP 220
Query: 283 SSLQASAREESRSELS----GRTTRTDGSSVGGTFSRATTLS-RGQSRKKKR 329
SS ++ +R SRS S R++ + S G+ SR+++ S RG S +KR
Sbjct: 221 SSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Score = 35.0 bits (79), Expect = 0.10
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 200 DVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD--SKSAVEDSTLSRYSQTS 257
D DE K L + + D + D + +DS+KK+++ S+S S S++S
Sbjct: 159 DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS 218
Query: 258 TWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGRTTRTDGSSVGGTFSRAT 317
+ + R+ + S +SRS SS + S S+S S R+ R S ++S ++
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278
Query: 318 TLSRGQSRKKKR 329
+ S ++RK+ R
Sbjct: 279 S-SPERNRKRSR 289
Score = 33.9 bits (76), Expect = 0.23
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 231 LQDSSKKEADSKSAVEDSTLSRY----------SQTSTWKLASVWGRADTGRGSHKRSRS 280
L++ KE++ + ED LS+Y + S + L + + S++RSRS
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS 204
Query: 281 VPSSLQASAREESRSELSGRT---TRTDGSSVGGTFSRATTLSRGQSRKKKRK 330
S + + S S S R+ +R+ SS + SR+++ R +SR K +
Sbjct: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSR 257
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 37.7 bits (86), Expect = 0.016
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 69 GGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAKE------E 122
GGG G G A G +GS PA+ P R A +P P R+ ++ K
Sbjct: 42 GGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGG 101
Query: 123 GDGAAGAGRRGP 134
G G G G GP
Sbjct: 102 GGGGTGGGHGGP 113
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 69 GGGRGRGRARGAAAGSGV-PAAPGPSGRTRRRPDAPAPDPE 108
GGG G+G A A + P APG G RR D DPE
Sbjct: 317 GGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSDPE 357
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,474,070
Number of Sequences: 37866
Number of extensions: 882394
Number of successful extensions: 9787
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 473
Number of HSP's that attempted gapping in prelim test: 8052
Number of HSP's gapped (non-prelim): 1939
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.