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Search of human proteins with 26051248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051248 tumor necrosis factor ligand superfamily, member 13 ... 501 e-142
gi|4507599 tumor necrosis factor ligand superfamily, member 13 i... 499 e-142
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 456 e-128
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 326 1e-89
gi|5730097 tumor necrosis factor superfamily, member 13b isoform... 87 1e-17
gi|224548983 tumor necrosis factor superfamily, member 13b isofo... 80 2e-15
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 45 4e-05
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 45 8e-05
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 37 0.016
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 33 0.30
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 31 1.1
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 31 1.1
gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.5
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.5
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 30 1.5
gi|239753489 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo ... 30 1.5
gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo ... 30 1.5
gi|223634014 solute carrier organic anion transporter family, me... 30 1.9
gi|223634012 solute carrier organic anion transporter family, me... 30 1.9
gi|6005820 solute carrier organic anion transporter family, memb... 30 1.9
gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 30 1.9
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 30 1.9
gi|148539600 ubiquitin specific protease 53 [Homo sapiens] 30 1.9
gi|22538470 eomesodermin [Homo sapiens] 30 2.5
gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens] 30 2.5
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 29 3.3
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 29 3.3
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 29 3.3
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 29 4.3
>gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
Length = 247
Score = 501 bits (1289), Expect = e-142
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
Query: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
Sbjct: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
Query: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
Sbjct: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
Query: 241 HGTFLGL 247
HGTFLGL
Sbjct: 241 HGTFLGL 247
>gi|4507599 tumor necrosis factor ligand superfamily, member 13
isoform alpha proprotein [Homo sapiens]
Length = 250
Score = 499 bits (1285), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
Query: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
Sbjct: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
Query: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
Sbjct: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
Query: 241 HGTFLG 246
HGTFLG
Sbjct: 241 HGTFLG 246
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 456 bits (1172), Expect = e-128
Identities = 229/246 (93%), Positives = 230/246 (93%), Gaps = 16/246 (6%)
Query: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR
Sbjct: 1 MPASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRR 60
Query: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHL 120
EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK
Sbjct: 61 EVSRLQGTGGPSQNGEGYPWQSLPEQSSDALEAWENGERSRKRRAVLTQKQK-------- 112
Query: 121 VPINATSKDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 180
+DSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ
Sbjct: 113 --------NDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQ 164
Query: 181 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 240
VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP
Sbjct: 165 VVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSP 224
Query: 241 HGTFLG 246
HGTFLG
Sbjct: 225 HGTFLG 230
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 326 bits (836), Expect = 1e-89
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 86 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 145
QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG
Sbjct: 166 QSSDALEAWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRG 225
Query: 146 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 205
RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD
Sbjct: 226 RGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPD 285
Query: 206 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 246
RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG
Sbjct: 286 RAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 326
>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
[Homo sapiens]
Length = 285
Score = 87.4 bits (215), Expect = 1e-17
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 52 QTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSS--DALEAWE--------NGERSR 101
Q +L SLR E+ P+ G G P L E + L+ +E + + SR
Sbjct: 73 QGDLASLRAELQGHHAEKLPA--GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSR 130
Query: 102 KRRAVLTQKQKKQHSVLHLVPINATSK-DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 160
+RAV ++ L L+ + T T V W + +RG L+ + + +++
Sbjct: 131 NKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKET 190
Query: 161 GVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLFRCIRSMPSHPDRAYNSCYSA 214
G + +Y QVL+ D T+ MG ++ R+ + TLFRCI++MP NSCYSA
Sbjct: 191 GYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN--NSCYSA 248
Query: 215 GVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 246
G+ L +GD L + IPR A+++L TF G
Sbjct: 249 GIAKLEEGDELQLAIPRENAQISLDGDVTFFG 280
>gi|224548983 tumor necrosis factor superfamily, member 13b isoform
2 [Homo sapiens]
Length = 266
Score = 80.1 bits (196), Expect = 2e-15
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 128 KDDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE-- 185
++ T V W + +RG L+ + + +++ G + +Y QVL+ D T+ MG ++ R+
Sbjct: 139 EETGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKV 198
Query: 186 ----GQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPH 241
+ TLFRCI++MP NSCYSAG+ L +GD L + IPR A+++L
Sbjct: 199 HVFGDELSLVTLFRCIQNMPETLPN--NSCYSAGIAKLEEGDELQLAIPRENAQISLDGD 256
Query: 242 GTFLG 246
TF G
Sbjct: 257 VTFFG 261
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 45.4 bits (106), Expect = 4e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 161 GVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHLH 220
G Y +YSQV + FT S E ++ +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVEVYYINFT--DFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCLLK 355
Query: 221 QGDILSVIIPRARAKLNLSPHGTFLG 246
++V + A +N+S H TF G
Sbjct: 356 ARQKIAVKMVHADISINMSKHTTFFG 381
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 44.7 bits (104), Expect = 8e-05
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 161 GVYLLYSQVLFQDVT-FTMGQVVSREGQGRQETLFRCIRSMPSHPDRAYNSCYSAGVFHL 219
G Y +YSQV + + T F +VV E + +C RS+ + YN+CY+AGV L
Sbjct: 299 GTYFIYSQVYYINFTDFASYEVVVDE-----KPFLQCTRSIETGKTN-YNTCYTAGVCLL 352
Query: 220 HQGDILSVIIPRARAKLNLSPHGTFLG 246
++V + A +N+S H TF G
Sbjct: 353 KARQKIAVKMVHADISINMSKHTTFFG 379
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 37.0 bits (84), Expect = 0.016
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 143 RRGRGLQAQGYGVR-----IQDAGVYLLYSQVLFQD---------VTFTMGQV-VSREGQ 187
RR L A G +R + G+YL+YSQVLF+ +T T+ ++ VS + +
Sbjct: 107 RRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTK 166
Query: 188 GRQETLFR--CIRSMPSHPDRA--YNSCYSAGVFHLHQGDILSVIIPR 231
+ + C R P + Y Y GVF L +GD LS I R
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINR 214
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 32.7 bits (73), Expect = 0.30
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 93 AWENGERSRKRRAVLTQKQKKQHSVLHLVPINATSKDDSDVTEVMWQPALRRGRGLQAQG 152
AW ER +K + + T K+ + H+V + ++D + E + + +G Q
Sbjct: 820 AWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSS 879
Query: 153 YGVRIQDAGVYLLY-----SQVLFQDVTFTMGQVVS 183
GV + D + +LY S+ F+D + Q VS
Sbjct: 880 IGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 30.8 bits (68), Expect = 1.1
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 113 KQHSVLHLV-----PINATSKDDSDVTEVMWQPALRRG---RGLQAQGYGVRIQDAGVYL 164
+QH +HL P D S ++W+ R G + + +G+Y
Sbjct: 49 RQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYF 108
Query: 165 LYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSM------------PSHPDRAYNSCY 212
+YSQV+F ++ S + LF P + +S Y
Sbjct: 109 VYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMY 168
Query: 213 SAGVFHLHQGDILSVI---IPRARAKLNLSPHGTFLG 246
F L QGD LS IP L LSP F G
Sbjct: 169 HGAAFQLTQGDQLSTHTDGIPH----LVLSPSTVFFG 201
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 30.8 bits (68), Expect = 1.1
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 27/157 (17%)
Query: 113 KQHSVLHLV-----PINATSKDDSDVTEVMWQPALRRG---RGLQAQGYGVRIQDAGVYL 164
+QH +HL P D S ++W+ R G + + +G+Y
Sbjct: 49 RQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYF 108
Query: 165 LYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSM------------PSHPDRAYNSCY 212
+YSQV+F ++ S + LF P + +S Y
Sbjct: 109 VYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMY 168
Query: 213 SAGVFHLHQGDILSVI---IPRARAKLNLSPHGTFLG 246
F L QGD LS IP L LSP F G
Sbjct: 169 HGAAFQLTQGDQLSTHTDGIPH----LVLSPSTVFFG 201
>gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform
3 [Homo sapiens]
Length = 226
Score = 30.4 bits (67), Expect = 1.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 63 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 117
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 30.4 bits (67), Expect = 1.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 138 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 192
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 1.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 144 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 198
>gi|239753489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 145 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 201
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 202 SHP 204
HP
Sbjct: 100 GHP 102
>gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo
sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 145 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 201
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 202 SHP 204
HP
Sbjct: 100 GHP 102
>gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo
sapiens]
Length = 104
Score = 30.4 bits (67), Expect = 1.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 145 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 201
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
Query: 202 SHP 204
HP
Sbjct: 100 GHP 102
>gi|223634014 solute carrier organic anion transporter family,
member 2B1 isoform 3 [Homo sapiens]
Length = 565
Score = 30.0 bits (66), Expect = 1.9
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 115 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 171
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 172 AVTDSPARKGKDSPSKQSPGEST 194
>gi|223634012 solute carrier organic anion transporter family,
member 2B1 isoform 2 [Homo sapiens]
Length = 687
Score = 30.0 bits (66), Expect = 1.9
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 237 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 293
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 294 AVTDSPARKGKDSPSKQSPGEST 316
>gi|6005820 solute carrier organic anion transporter family, member
2B1 isoform 1 [Homo sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 1.9
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 14 PPGNMGGPVREPALSVALWLSWGAALGAVACA--------MALLTQQTELQSLRREVSRL 65
P G + +++P A WL + A GAVA A + ++ ELQ RR+V L
Sbjct: 259 PEGGISLTIKDPRWVGAWWLGFLIAAGAVALAAIPYFFFPKEMPKEKRELQ-FRRKV--L 315
Query: 66 QGTGGPSQNGEGYPWQSLPEQSS 88
T P++ G+ P + P +S+
Sbjct: 316 AVTDSPARKGKDSPSKQSPGEST 338
>gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens]
Length = 1816
Score = 30.0 bits (66), Expect = 1.9
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 50 TQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSD--ALEAWENGERSRKRRAVL 107
T Q L L++E++ L+ Q+G P S P SD ALE N E+S +AVL
Sbjct: 1352 TMQHNLIKLQQEMAELEAV--LEQHGS-QPSNSYPSIISDSSALEDLRNPEQSTSEKAVL 1408
Query: 108 TQKQKKQHSV 117
T ++ ++ +
Sbjct: 1409 TSQKSSEYPI 1418
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 30.0 bits (66), Expect = 1.9
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 50 TQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSD--ALEAWENGERSRKRRAVL 107
T Q L L++E++ L+ Q+G P S P SD ALE N E+S +AVL
Sbjct: 1399 TMQHNLIKLQQEMAELEAV--LEQHGS-QPSNSYPSIISDSSALEDLRNPEQSTSEKAVL 1455
Query: 108 TQKQKKQHSV 117
T ++ ++ +
Sbjct: 1456 TSQKSSEYPI 1465
>gi|148539600 ubiquitin specific protease 53 [Homo sapiens]
Length = 1073
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 72 SQNGEGYPWQSLPEQSSDALEAWENGERSRKRR-----------AVLTQKQKKQHSVLHL 120
S NG GY S + S D + ++ +SR R ++ ++ +K+QHS H
Sbjct: 552 SDNGTGYDTDS-SQDSRDRGNSCDSSSKSRNRGWKPMRETLNVDSIFSESEKRQHSPRHK 610
Query: 121 VPINATSKDDSDVTEVMWQPALRRGRGL 148
I+ K D + W + +GL
Sbjct: 611 PNISNKPKSSKDPSFSNWPKENPKQKGL 638
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 3 ASSPFLLAPKGPPGNMGGPVREPALSVALWLSWGAALGAVACAMALLTQQTELQSLRREV 62
AS+ + P P G G P E L A AA A A A A T + + SL E
Sbjct: 90 ASAAAVAKPGPPDGRKGSPCGEEELPSA------AAAAAAAAAAAAATARYSMDSLSSER 143
Query: 63 SRLQGTGGPSQNGEGYPWQSLPEQSS 88
LQ + GP + P P Q++
Sbjct: 144 YYLQ-SPGPQGSELAAPCSLFPYQAA 168
>gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens]
Length = 2179
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 115 HSVLHLVPINATSKDDSD---VTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLF 171
HS+ H PIN KDDS +T V+ + L G+ + QG +R D +F
Sbjct: 504 HSIRHKFPINVLPKDDSPPFLITNVVIE--LEEGQTILIQGSMLRASDVDA---SDDYIF 558
Query: 172 QDVTF--TMGQVVSREGQG 188
++T G+++ + G G
Sbjct: 559 FNITKPPQAGEIMKKPGPG 577
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1357 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1413
Query: 93 AWENGERSRKRRA-VLTQK 110
A E R R A LTQ+
Sbjct: 1414 AGEEARRRAAREAEALTQR 1432
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1349 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1405
Query: 93 AWENGERSRKRRA-VLTQK 110
A E R R A LTQ+
Sbjct: 1406 AGEEARRRAAREAEALTQR 1424
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 33 LSWGAALGAVACAMALLTQQTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSSDALE 92
L+ G+ + A+ A L +Q E ++ RE + + +Q E W+ E+ + ALE
Sbjct: 1390 LALGSRVRAMEAEAAGLREQLEEEAAARERAGRELQTAQAQLSE---WRRRQEEEAGALE 1446
Query: 93 AWENGERSRKRRA-VLTQK 110
A E R R A LTQ+
Sbjct: 1447 AGEEARRRAAREAEALTQR 1465
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 28.9 bits (63), Expect = 4.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 25 PALSVALWLSWGAALGAVACAMALLTQQTELQSLRREVS 63
PA AL +S A GAVA L+QQTE +L S
Sbjct: 373 PAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAAS 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,597,783
Number of Sequences: 37866
Number of extensions: 486252
Number of successful extensions: 2182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 52
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.