Guide to the Human Genome
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Name: SLCO2B1 Sequence: fasta or formatted (687aa) NCBI GI: 223634012
Description:

solute carrier organic anion transporter family, member 2B1 isoform 2

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [565aa] solute carrier organic anion transporter family, member 2B1 isofo...
alt prot [709aa] solute carrier organic anion transporter family, member 2B1 isofo...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         48           2
 C cysteine            3.5         24           1
 D aspartate           3.2         22           2
 E glutamate           3.1         21           1
 F phenylalanine       5.8         40           3
 G glycine             8.0         55           2
 H histidine           2.3         16           1
 I isoleucine          5.2         36           1
 K lysine              3.8         26           2
 L leucine            12.5         86           3
 M methionine          2.6         18           2
 N asparagine          2.8         19           2
 P proline             6.6         45           1
 Q glutamine           3.9         27           2
 R arginine            4.1         28           2
 S serine              9.6         66           2
 T threonine           4.8         33           2
 V valine              8.2         56           2
 W tryptophan          0.9          6           2
 Y tyrosine            2.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier organic anion transporter family, me... 
SLCO2B1               1.000   solute carrier organic anion transporter family, memb...
SLCO2B1               0.816   solute carrier organic anion transporter family, me...
SLCO2A1               0.376   solute carrier organic anion transporter family, me...
SLCO3A1               0.264   solute carrier organic anion transporter family, me...
SLCO3A1               0.264   solute carrier organic anion transporter family, me...
SLCO1C1               0.241   solute carrier organic anion transporter family, memb...
SLCO5A1               0.238   solute carrier organic anion transporter family, me...
SLCO1C1               0.232   solute carrier organic anion transporter family, me...
SLCO1B3               0.231   solute carrier organic anion transporter family, memb...
SLCO1B1               0.225   solute carrier organic anion transporter family, me...
SLCO1A2               0.221   organic anion transporting polypeptide A 
SLCO1A2               0.221   organic anion transporting polypeptide A 
LST-3TM12             0.211   liver-specific organic anion transporter 3TM12 [Hom...
SLCO1C1               0.203   solute carrier organic anion transporter family, me...
SLCO4C1               0.200   solute carrier organic anion transporter family, mem...
SLCO4A1               0.195   solute carrier organic anion transporter family memb...
SLCO5A1               0.194   solute carrier organic anion transporter family, me...
SLCO1C1               0.182   solute carrier organic anion transporter family, me...
SLCO6A1               0.130   solute carrier organic anion transporter family, mem...
SLCO5A1               0.122   solute carrier organic anion transporter family, me...
MRPS31                0.006   mitochondrial ribosomal protein S31 
FLNA                  0.004   filamin A, alpha isoform 2 
FLNA                  0.004   filamin A, alpha isoform 1 
KRTAP10-6             0.004   keratin associated protein 10-6 
GPR32                 0.004   G protein-coupled receptor 32 
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 ...
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 i...
TNFSF13               0.004   tumor necrosis factor ligand superfamily, member 13 ...
IL21R                 0.004   interleukin 21 receptor precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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