Guide to the Human Genome
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Name: KIAA2013 Sequence: fasta or formatted (634aa) NCBI GI: 25286703
Description:

hypothetical protein LOC90231

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         59           2
 C cysteine            1.6         10           1
 D aspartate           3.6         23           1
 E glutamate           4.9         31           1
 F phenylalanine       3.2         20           1
 G glycine             8.2         52           2
 H histidine           3.8         24           1
 I isoleucine          2.1         13           1
 K lysine              3.8         24           2
 L leucine            16.7        106           6
 M methionine          1.6         10           1
 N asparagine          2.2         14           2
 P proline             7.6         48           2
 Q glutamine           4.7         30           2
 R arginine            5.4         34           2
 S serine              6.2         39           3
 T threonine           4.6         29           1
 V valine              7.1         45           3
 W tryptophan          1.7         11           1
 Y tyrosine            1.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90231 
LOC728138             0.334   PREDICTED: hypothetical protein LOC728138, partial ...
TAF4                  0.012   TBP-associated factor 4 
RFX5                  0.010   regulatory factor X, 5 
RFX5                  0.010   regulatory factor X, 5 
SPATA5L1              0.008   spermatogenesis associated 5-like 1 
LOC100293878          0.006   PREDICTED: similar to hCG1779533 
LOC100291076          0.006   PREDICTED: hypothetical protein XP_002347846 
TLR9                  0.006   toll-like receptor 9 isoform A precursor 
KCNH3                 0.006   potassium voltage-gated channel, subfamily H (eag-re...
RBM42                 0.006   RNA binding motif protein 42 
PDZD3                 0.006   PDZ domain containing 3 
DCP1B                 0.005   decapping enzyme Dcp1b 
SNX19                 0.005   sorting nexin 19 
GLIS2                 0.005   GLIS family zinc finger 2 
ATOH8                 0.004   atonal homolog 8 
LOC100293456          0.004   PREDICTED: hypothetical protein 
LOC100133885          0.004   PREDICTED: hypothetical protein 
LOC100287108          0.004   PREDICTED: hypothetical protein 
LOC100287108          0.004   PREDICTED: hypothetical protein XP_002342658 
LOC100294499          0.004   PREDICTED: hypothetical protein 
LOC100294290          0.004   PREDICTED: hypothetical protein XP_002344064 
LOC100294201          0.004   PREDICTED: hypothetical protein 
LOC100294172          0.004   PREDICTED: hypothetical protein 
LOC100294122          0.004   PREDICTED: hypothetical protein 
SLC22A17              0.004   solute carrier family 22, member 17 isoform b 
SLC22A17              0.004   solute carrier family 22, member 17 isoform a 
OSBP                  0.004   oxysterol binding protein 
TPRX1                 0.004   tetra-peptide repeat homeobox 
SH3BP2                0.004   SH3-domain binding protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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