Guide to the Human Genome
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Name: TLR9 Sequence: fasta or formatted (1032aa) NCBI GI: 8394456
Description:

toll-like receptor 9 isoform A precursor

Referenced in:

Toll-like Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         75           2
 C cysteine            2.8         29           1
 D aspartate           4.5         46           1
 E glutamate           3.4         35           2
 F phenylalanine       5.1         53           2
 G glycine             5.7         59           2
 H histidine           4.1         42           2
 I isoleucine          1.8         19           1
 K lysine              2.6         27           1
 L leucine            18.6        192           3
 M methionine          1.9         20           1
 N asparagine          5.2         54           2
 P proline             5.4         56           2
 Q glutamine           4.3         44           2
 R arginine            6.2         64           2
 S serine              8.4         87           2
 T threonine           3.8         39           2
 V valine              4.9         51           3
 W tryptophan          2.0         21           2
 Y tyrosine            1.8         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   toll-like receptor 9 isoform A precursor 
TLR7                  0.260   toll-like receptor 7 
TLR8                  0.254   toll-like receptor 8 
TLR3                  0.067   toll-like receptor 3 
TLR5                  0.061   toll-like receptor 5 
IGFALS                0.059   insulin-like growth factor binding protein, acid la...
IGFALS                0.059   insulin-like growth factor binding protein, acid labi...
TLR4                  0.055   toll-like receptor 4 precursor 
TLR2                  0.049   toll-like receptor 2 
TLR6                  0.040   toll-like receptor 6 
TLR1                  0.038   toll-like receptor 1 
LRRC15                0.038   leucine rich repeat containing 15 isoform a 
LRRC15                0.038   leucine rich repeat containing 15 isoform b 
TLR10                 0.033   toll-like receptor 10 precursor 
TLR10                 0.033   toll-like receptor 10 precursor 
LRRC32                0.033   leucine rich repeat containing 32 precursor 
LRRC32                0.033   leucine rich repeat containing 32 precursor 
CHADL                 0.033   chondroadherin-like 
LINGO3                0.033   leucine rich repeat and Ig domain containing 3 [Hom...
LRIG3                 0.030   leucine-rich repeats and immunoglobulin-like domains...
KIAA0644              0.029   hypothetical protein LOC9865 
LRIG3                 0.029   leucine-rich repeats and immunoglobulin-like domain...
PODN                  0.029   podocan 
LRIG2                 0.028   leucine-rich repeats and immunoglobulin-like domains ...
LRIG1                 0.028   leucine-rich repeats and immunoglobulin-like domains...
LRRTM4                0.028   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.028   leucine rich repeat transmembrane neuronal 4 isofor...
LGR6                  0.028   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.028   leucine-rich repeat-containing G protein-coupled rec...
LRRC33                0.028   leucine rich repeat containing 33 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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