Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131251 Sequence: fasta or formatted (737aa) NCBI GI: 169213511
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {737aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         93           3
 C cysteine            1.6         12           2
 D aspartate           2.2         16           1
 E glutamate           2.6         19           2
 F phenylalanine       2.0         15           1
 G glycine             7.3         54           3
 H histidine           2.0         15           2
 I isoleucine          2.3         17           1
 K lysine              1.8         13           2
 L leucine             9.2         68           2
 M methionine          1.4         10           1
 N asparagine          1.1          8           1
 P proline             8.7         64           4
 Q glutamine           3.7         27           2
 R arginine           11.5         85           4
 S serine             15.1        111           4
 T threonine          10.6         78           2
 V valine              3.7         27           1
 W tryptophan          0.7          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131251          0.999   PREDICTED: hypothetical protein 
LOC730474             0.063   PREDICTED: hypothetical protein, partial 
LOC730474             0.058   PREDICTED: hypothetical protein 
MUC3A                 0.053   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100294420          0.050   PREDICTED: similar to mucin 2 
MUC2                  0.050   mucin 2 precursor 
MUC3A                 0.049   PREDICTED: mucin 3A, intestinal 
LOC100134138          0.045   PREDICTED: similar to mucin, partial 
MUC21                 0.045   mucin 21 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC729792             0.045   PREDICTED: hypothetical protein 
LOC100294501          0.045   PREDICTED: hypothetical protein 
LOC100294249          0.045   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.045   PREDICTED: hypothetical protein 
LOC100294204          0.045   PREDICTED: hypothetical protein 
LOC100294136          0.045   PREDICTED: hypothetical protein 
LOC100294091          0.045   PREDICTED: hypothetical protein 
LOC730401             0.045   PREDICTED: hypothetical protein 
LOC100131514          0.045   PREDICTED: similar to hCG1747327, partial 
LOC732156             0.045   PREDICTED: similar to Mucin-3A 
MUC3B                 0.044   PREDICTED: mucin 3B, cell surface associated, parti...
MUC5AC                0.043   mucin 5AC 
LOC100294470          0.043   PREDICTED: hypothetical protein, partial 
MUC5B                 0.043   mucin 5, subtype B, tracheobronchial 
LOC100133408          0.043   PREDICTED: similar to mucin 
LOC100133790          0.043   PREDICTED: intestinal mucin-like, partial 
LOC100132635          0.040   PREDICTED: similar to mucin 5, partial 
TNRC18                0.039   trinucleotide repeat containing 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press