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Search of human proteins with 24497601
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497601 endothelial differentiation-related factor 1
isoform beta [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497601 endothelial differentiation-related factor 1 isoform... 275 7e-75
gi|4503453 endothelial differentiation-related factor 1 isoform ... 255 9e-69
gi|4758648 kinesin family member 5B [Homo sapiens] 32 0.22
gi|5032013 kinesin family member 20A [Homo sapiens] 30 0.63
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 29 1.4
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 1.4
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 1.4
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 29 1.4
gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member ... 29 1.4
gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member ... 29 1.4
gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member... 29 1.4
gi|7661844 coiled-coil domain containing 22 [Homo sapiens] 29 1.4
gi|15618995 keratin 71 [Homo sapiens] 28 1.8
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 28 1.8
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 28 1.8
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 28 1.8
gi|49227854 mediator complex subunit 10 [Homo sapiens] 28 1.8
gi|116805342 human immunodeficiency virus type I enhancer bindin... 28 1.8
gi|56550043 sarcolemma associated protein [Homo sapiens] 28 2.4
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 28 3.1
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 28 3.1
gi|14150155 vacuolar protein sorting 25 [Homo sapiens] 28 3.1
gi|28173564 keratin 73 [Homo sapiens] 27 4.1
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 27 4.1
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 27 4.1
gi|15277342 estradiol 17 beta-dehydrogenase 8 [Homo sapiens] 27 4.1
gi|7705415 hook homolog 1 [Homo sapiens] 27 4.1
gi|55770834 centromere protein F [Homo sapiens] 27 4.1
gi|134152708 arginine and glutamate rich 1 [Homo sapiens] 27 4.1
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 27 5.4
>gi|24497601 endothelial differentiation-related factor 1 isoform
beta [Homo sapiens]
Length = 139
Score = 275 bits (704), Expect = 7e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 60
MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
Sbjct: 1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 60
Query: 61 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 120
LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
Sbjct: 61 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 120
Query: 121 LGKIERAIGECPSTLRRVR 139
LGKIERAIGECPSTLRRVR
Sbjct: 121 LGKIERAIGECPSTLRRVR 139
>gi|4503453 endothelial differentiation-related factor 1 isoform
alpha [Homo sapiens]
Length = 148
Score = 255 bits (651), Expect = 9e-69
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 60
MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
Sbjct: 1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK 60
Query: 61 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 120
LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
Sbjct: 61 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 120
Query: 121 LGKIERAIG 129
LGKIERAIG
Sbjct: 121 LGKIERAIG 129
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 31.6 bits (70), Expect = 0.22
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 18 TAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLE- 76
T Q ++++ +L +R VE K A Q K + + T DR E+ D LE
Sbjct: 731 TDLQDQNQKMMLEQERLR--VEHEKLKATDQEKSRKLHELTVMQDRR-EQARQDLKGLEE 787
Query: 77 -VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 120
V K +Q + L +DLAT++ + ++ +D G A ++
Sbjct: 788 TVAKELQTLHNLRKLFVQDLATRVKKSAEIDSDDTGGSAAQKQKI 832
>gi|5032013 kinesin family member 20A [Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 0.63
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 13 RKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDR 72
R++ Q+ S+ A+ +QR T + Q + + + A+L+ TEELH +
Sbjct: 659 RQQSVAHQQSGSELALRRSQRLAASASTQQL----QEVKAKLQQCKAELNSTTEELHKYQ 714
Query: 73 -----------VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVL 121
T++V K +++G+++ L + +L K+ E Q + RA ++
Sbjct: 715 KMLEPPPSAKPFTIDVDKKLEEGQKNIRLLRTEL-QKLGESLQ-----SAERACCHSTGA 768
Query: 122 GKIERAIGECPSTL 135
GK+ +A+ C L
Sbjct: 769 GKLRQALTTCDDIL 782
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 RRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHH-DRVTLEVGKV 80
R GE+ + AGQ K K K+D E EE D V +E GK+
Sbjct: 4208 REGEEQGKEDRRGAGQEKVDREDKEQGKMDHEVEEQQKADGVGIEQGKM 4256
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 RRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHH-DRVTLEVGKV 80
R GE+ + AGQ K K K+D E EE D V +E GK+
Sbjct: 4137 REGEEQGKEDRRGAGQEKVDREDKEQGKMDHEVEEQQKADGVGIEQGKM 4185
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 RRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHH-DRVTLEVGKV 80
R GE+ + AGQ K K K+D E EE D V +E GK+
Sbjct: 4137 REGEEQGKEDRRGAGQEKVDREDKEQGKMDHEVEEQQKADGVGIEQGKM 4185
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 RRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHH-DRVTLEVGKV 80
R GE+ + AGQ K K K+D E EE D V +E GK+
Sbjct: 4137 REGEEQGKEDRRGAGQEKVDREDKEQGKMDHEVEEQQKADGVGIEQGKM 4185
>gi|9955968 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 2 [Homo sapiens]
Length = 723
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 47 GQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKP--- 103
G ++H++ +L T E H V L+ G+V+QQG + L Q L K+ ++
Sbjct: 644 GNLQKHTVLIIAHRLS--TVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQMLG 701
Query: 104 -QVIADYESGRAIP 116
Q AD+ +G P
Sbjct: 702 LQPAADFTAGHNEP 715
>gi|9955966 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Homo sapiens]
Length = 766
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 47 GQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKP--- 103
G ++H++ +L T E H V L+ G+V+QQG + L Q L K+ ++
Sbjct: 687 GNLQKHTVLIIAHRLS--TVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQMLG 744
Query: 104 -QVIADYESGRAIP 116
Q AD+ +G P
Sbjct: 745 LQPAADFTAGHNEP 758
>gi|45243524 ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Homo sapiens]
Length = 766
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 47 GQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKP--- 103
G ++H++ +L T E H V L+ G+V+QQG + L Q L K+ ++
Sbjct: 687 GNLQKHTVLIIAHRLS--TVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQMLG 744
Query: 104 -QVIADYESGRAIP 116
Q AD+ +G P
Sbjct: 745 LQPAADFTAGHNEP 758
>gi|7661844 coiled-coil domain containing 22 [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 20 AQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGK 79
AQA + A RR E V WAA + + S+ + ++R EE+ D TL V
Sbjct: 307 AQATQVSDVPATSRRPEQVT----WAAQEQELESLREQLEGVNRSIEEVEADMKTLGVSF 362
Query: 80 V 80
V
Sbjct: 363 V 363
>gi|15618995 keratin 71 [Homo sapiens]
Length = 523
Score = 28.5 bits (62), Expect = 1.8
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 21 QAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKV 80
Q K ++ LAA R G+D++ +K N+ +T+ ++ E E + LE
Sbjct: 324 QTKFQELQLAAGRHGDDLKNTK------NEISELTRLIQRIRSEIENVKKQASNLETAIA 377
Query: 81 IQQGRQSKGLTQKDLATKINEKPQVI--ADYESGRAIPNNQVLGKIERAIGECPSTLRRV 138
+ R L KD K++E + A E R + Q L ++ A+ +T R++
Sbjct: 378 DAEQRGDNAL--KDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKL 435
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 28.5 bits (62), Expect = 1.8
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 33 RRGEDVETSKKWA-AGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLT 91
R E +E +K+W AG+ KQ + K E E+ E + G Q +
Sbjct: 649 RNVEVIELAKEWTPAGKAKQENSAKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGE 708
Query: 92 QKDLATKINEKPQVIADYESGR--AIPNNQVLGKIERAIGECPS 133
+ D +E D ESGR + N + + +A G+ S
Sbjct: 709 EGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSDS 752
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 29 LAAQRRGEDVETSKKWAAG-QNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQS 87
L+ + +VET K QN++ + + KLD+E E+L+H T +++ + +
Sbjct: 349 LSKAEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEMLTKDKAD 408
Query: 88 K 88
K
Sbjct: 409 K 409
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 29 LAAQRRGEDVETSKKWAAG-QNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQS 87
L+ + +VET K QN++ + + KLD+E E+L+H T +++ + +
Sbjct: 488 LSKAEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEMLTKDKAD 547
Query: 88 K 88
K
Sbjct: 548 K 548
>gi|49227854 mediator complex subunit 10 [Homo sapiens]
Length = 135
Score = 28.5 bits (62), Expect = 1.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 46 AGQN-KQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQ 104
AG N K + I +D+ ++LH V LEV + I QGR + T++ L + + Q
Sbjct: 35 AGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQ 94
Query: 105 V 105
V
Sbjct: 95 V 95
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 28.5 bits (62), Expect = 1.8
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 65 TEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKI 124
T + ++R TL GK Q+ + + T + T + Q+ DY I + + GK
Sbjct: 2262 TAQSDYNRKTLSPGKARQRAARDENDTIPSVDTSRSPCHQMSVDYPESEEILRSSMAGKA 2321
Query: 125 ERAIGECPSTLR 136
AI + PS++R
Sbjct: 2322 V-AITQSPSSVR 2332
>gi|56550043 sarcolemma associated protein [Homo sapiens]
Length = 811
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 21 QAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKN----TAKLDRETEELHHDR 72
Q + +Q A + +GE + K+W A + + HS+ + +++L R+ +ELH+ +
Sbjct: 626 QCEDQQREEATRLQGELEKLRKEWNALETECHSLKRENVLLSSELQRQEKELHNSQ 681
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 27.7 bits (60), Expect = 3.1
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 10 TVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELH 69
T R+K A +KSK+++ +A + D T+KK +N++K + E+E+
Sbjct: 225 TAKREKPKQKATSKSKKSVKSANVKKADSSTTKK-----------NQNSSKKESESEDSS 273
Query: 70 HDRVTLEVGKVIQQGRQSKGLTQKDLAT 97
D ++ K + K +K LA+
Sbjct: 274 DDEPLIKKLKKPPTDEELKETIKKLLAS 301
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 27.7 bits (60), Expect = 3.1
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 10 TVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELH 69
T R+K A +KSK+++ +A + D T+KK +N++K + E+E+
Sbjct: 259 TAKREKPKQKATSKSKKSVKSANVKKADSSTTKK-----------NQNSSKKESESEDSS 307
Query: 70 HDRVTLEVGKVIQQGRQSKGLTQKDLAT 97
D ++ K + K +K LA+
Sbjct: 308 DDEPLIKKLKKPPTDEELKETIKKLLAS 335
>gi|14150155 vacuolar protein sorting 25 [Homo sapiens]
Length = 176
Score = 27.7 bits (60), Expect = 3.1
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 12 LRKKGPTAAQAKSKQAILAAQRRGED-VETSKKWA--AGQNKQ-HSITKNTAKLDRETEE 67
LRKKG KSK + L RR E+ + +W +GQN ++ + T D E EE
Sbjct: 81 LRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEE 140
Query: 68 LH--HDRVTLEVGKVIQQGRQSKGLTQKD 94
H + L + +QQ +++ +T D
Sbjct: 141 FHGLDEATLLRALQALQQEHKAEIITVSD 169
>gi|28173564 keratin 73 [Homo sapiens]
Length = 540
Score = 27.3 bits (59), Expect = 4.1
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 21 QAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKV 80
Q K ++ LAA R G+D++ +K N+ +T+ +L E E + LE
Sbjct: 326 QTKFQELQLAAGRHGDDLKHTK------NEISELTRLIQRLRSEIESVKKQCANLET--A 377
Query: 81 IQQGRQSKGLTQKDLATKINE 101
I Q KD K++E
Sbjct: 378 IADAEQRGDCALKDARAKLDE 398
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 27.3 bits (59), Expect = 4.1
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 13 RKKGPTAAQAKSKQAILA-------AQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRET 65
+K+G ++K K ++ G+D E KK G+N Q + +N K E
Sbjct: 250 KKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKGQHEK 309
Query: 66 EELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIAD 108
E R E ++ +Q+K +K K+ +K + D
Sbjct: 310 EAADRKRKQEE---QMETEQQNKDEGKKPEVKKVEKKRETSMD 349
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 27.3 bits (59), Expect = 4.1
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 13 RKKGPTAAQAKSKQAILA-------AQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRET 65
+K+G ++K K ++ G+D E KK G+N Q + +N K E
Sbjct: 250 KKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKGQHEK 309
Query: 66 EELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIAD 108
E R E ++ +Q+K +K K+ +K + D
Sbjct: 310 EAADRKRKQEE---QMETEQQNKDEGKKPEVKKVEKKRETSMD 349
>gi|15277342 estradiol 17 beta-dehydrogenase 8 [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETS 41
M+E DWD V + KG + QA+++ RG + S
Sbjct: 115 MSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINIS 155
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 27.3 bits (59), Expect = 4.1
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 21 QAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKV 80
Q SK+ I Q++ ED++ S + +++ S +K KL+ E+L
Sbjct: 510 QRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTE---------- 559
Query: 81 IQQGRQSKGLTQKDLATKINEKPQVIADYES 111
+ + Q K +DL IN+ Q I + E+
Sbjct: 560 VHEELQKKQELIEDLQPDINQNVQKINELEA 590
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 27.3 bits (59), Expect = 4.1
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 14 KKGPTAAQAKSKQAILAAQRRGEDVETSKK----WAAGQNKQHSITKNTAKLDRETEELH 69
KK AQ K K I + ++ E+ E +K A Q KQ + T K+D T E+
Sbjct: 2785 KKENERAQGKMKLLIKSCKQLEEEKEILQKELSQLQAAQEKQKTGTVMDTKVDELTTEIK 2844
Query: 70 HDRVTLE 76
+ TLE
Sbjct: 2845 ELKETLE 2851
>gi|134152708 arginine and glutamate rich 1 [Homo sapiens]
Length = 273
Score = 27.3 bits (59), Expect = 4.1
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 23 KSKQAILAAQRRGEDVETSKKWAAGQ----------NKQHSITKNTAKLDRETEELHHDR 72
+ +QA LAAQ+ E+ E +K+ + Q + + ++ E ++H +R
Sbjct: 178 RQRQAELAAQKAREEEERAKREELERILEENNRKIAEAQAKLAEEQLRIVEEQRKIHEER 237
Query: 73 VTLEVGKVIQQGRQSK 88
+ LE + QQ + K
Sbjct: 238 MKLEQERQRQQKEEQK 253
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 56 KNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEK 102
K+ AK+ E EEL+ D LE G V +G+ +D+ ++ E+
Sbjct: 767 KDAAKVLAEDEELYGDFEDLETGDV-HKGKSGPNTQNEDIEKEVKEE 812
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,621,330
Number of Sequences: 37866
Number of extensions: 162878
Number of successful extensions: 503
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 36
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.