Guide to the Human Genome
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Name: HIVEP1 Sequence: fasta or formatted (2718aa) NCBI GI: 116805342
Description:

human immunodeficiency virus type I enhancer binding protein 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        156           3
 C cysteine            1.7         46           1
 D aspartate           4.3        118           3
 E glutamate           6.2        168           3
 F phenylalanine       2.2         60           1
 G glycine             4.7        127           2
 H histidine           3.4         92           2
 I isoleucine          3.6         99           2
 K lysine              6.3        172           3
 L leucine             8.6        234           3
 M methionine          1.5         42           1
 N asparagine          4.4        120           2
 P proline             8.2        224           3
 Q glutamine           7.1        192           3
 R arginine            4.4        120           3
 S serine             13.4        363           4
 T threonine           6.6        179           3
 V valine              6.0        163           3
 W tryptophan          0.2          6           1
 Y tyrosine            1.4         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   human immunodeficiency virus type I enhancer bindin... 
HIVEP2                0.133   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.129   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.129   human immunodeficiency virus type I enhancer bindin...
ZNF831                0.036   zinc finger protein 831 
ZNF853                0.008   zinc finger protein 853 
IKZF3                 0.008   aiolos isoform 6 
IKZF3                 0.008   aiolos isoform 4 
IKZF3                 0.008   aiolos isoform 3 
IKZF3                 0.008   aiolos isoform 1 
ZNF530                0.008   zinc finger protein 530 
ZNF236                0.008   zinc finger protein 236 
ZNF574                0.008   zinc finger protein 574 
ZNF317                0.008   zinc finger protein 317 
ZNF286A               0.008   zinc finger protein 286 
ZNF286A               0.008   zinc finger protein 286 
ZNF341                0.008   zinc finger protein 341 
ZNF837                0.007   zinc finger protein 837 isoform 1 
ZNF837                0.007   zinc finger protein 837 isoform 2 
IKZF4                 0.007   zinc finger protein, subfamily 1A, 4 
IKZF2                 0.007   helios isoform 1 
ZNF467                0.007   zinc finger protein 467 
ZNF300                0.007   zinc finger protein 300 
ZNF586                0.007   zinc finger protein 586 
IKZF1                 0.007   zinc finger protein, subfamily 1A, 1 (Ikaros) 
SALL1                 0.007   sal-like 1 isoform b 
SALL1                 0.007   sal-like 1 isoform a 
PRDM9                 0.007   PR domain containing 9 
ZNF212                0.007   zinc finger protein 212 
ZNF260                0.007   zinc finger protein 260 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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