Guide to the Human Genome
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Name: LOC100129906 Sequence: fasta or formatted (162aa) NCBI GI: 239749787
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {162aa} PREDICTED: hypothetical protein
alt mRNA {162aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         20           3
 C cysteine            2.5          4           2
 D aspartate           1.9          3           1
 E glutamate           4.9          8           2
 F phenylalanine       3.1          5           1
 G glycine            13.0         21           3
 H histidine           1.9          3           1
 I isoleucine          1.9          3           1
 K lysine              1.2          2           1
 L leucine             4.3          7           1
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline            11.1         18           2
 Q glutamine           5.6          9           1
 R arginine           14.8         24           3
 S serine              9.9         16           3
 T threonine           5.6          9           1
 V valine              3.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129906          1.000   PREDICTED: hypothetical protein 
LOC100129906          0.994   PREDICTED: hypothetical protein 
GAS2L1                0.058   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.058   growth arrest-specific 2 like 1 isoform a 
C2orf55               0.042   hypothetical protein LOC343990 
LOC100293766          0.032   PREDICTED: hypothetical protein 
LOC100290093          0.032   PREDICTED: hypothetical protein XP_002346542 
LOC100287789          0.032   PREDICTED: hypothetical protein XP_002342381 
BRD2                  0.032   bromodomain containing 2 
BRD2                  0.032   bromodomain containing 2 
LOC100289782          0.029   PREDICTED: hypothetical protein XP_002347588 
BAT2                  0.029   HLA-B associated transcript-2 
SCRT1                 0.029   scratch 
BZRAP1                0.026   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.026   peripheral benzodiazepine receptor-associated prote...
GATA6                 0.026   GATA binding protein 6 
ZFP91                 0.026   zinc finger protein 91 
EMID1                 0.026   EMI domain containing 1 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC645321             0.023   PREDICTED: hypothetical protein 
LOC100293604          0.023   PREDICTED: hypothetical protein 
LOC100287837          0.023   PREDICTED: hypothetical protein XP_002343157 
CDC2L5                0.023   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.023   cell division cycle 2-like 5 isoform 2 
MTX1                  0.023   metaxin 1 isoform 1 
MTX1                  0.023   metaxin 1 isoform 2 
CSTF2                 0.023   cleavage stimulation factor subunit 2 
LOC100291718          0.023   PREDICTED: hypothetical protein XP_002345751 
LOC100287726          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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