Search of human proteins with 24308370

Search of human proteins with 24308370

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24308370 nudix-type motif 16 [Homo sapiens]
         (162 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24308370 nudix-type motif 16 [Homo sapiens]                        319   6e-88
gi|14150147 syndesmos [Homo sapiens]                                  172   1e-43
gi|32469515 nudix-type motif 8 [Homo sapiens]                          30   0.70 
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap...    28   2.6  
gi|239752538 PREDICTED: hypothetical protein, partial [Homo sapi...    28   4.5  
gi|113427727 PREDICTED: hypothetical protein [Homo sapiens]            28   4.5  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    28   4.5  
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int...    27   5.9  
gi|133925795 zinc finger, CCCH-type with G patch domain isoform ...    27   5.9  
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ...    27   5.9  
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ...    27   5.9  
gi|189571674 cadherin-like 23 isoform 1 precursor [Homo sapiens]       27   7.7  

>gi|24308370 nudix-type motif 16 [Homo sapiens]
          Length = 162

 Score =  319 bits (818), Expect = 6e-88
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERT 60
           MLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERT
Sbjct: 1   MLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERT 60

Query: 61  DYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG 120
           DYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG
Sbjct: 61  DYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG 120

Query: 121 GLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPAHH 162
           GLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPAHH
Sbjct: 121 GLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPAHH 162


>gi|14150147 syndesmos [Homo sapiens]
          Length = 211

 Score =  172 bits (435), Expect = 1e-43
 Identities = 91/148 (61%), Positives = 111/148 (75%), Gaps = 5/148 (3%)

Query: 2   LFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTD 61
           LFGRIP+R+++LMQMRFDG LGFPGGFVD +  SLEDGLNR L   LG      R+   D
Sbjct: 40  LFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLG----CLRLTEAD 95

Query: 62  YRSSHVGSGP-RVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG 120
           Y SSH+  GP RVVAH YA++LTLE+L AVE  A  ++DHGLEVLGLVRVPLYT +D VG
Sbjct: 96  YLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVG 155

Query: 121 GLPTFLENSFIGSAREQLLEALQDLGLL 148
           G P FL N+F+ +A+ QLL AL+ L ++
Sbjct: 156 GFPNFLSNAFVSTAKCQLLFALKVLNMM 183


>gi|32469515 nudix-type motif 8 [Homo sapiens]
          Length = 140

 Score = 30.4 bits (67), Expect = 0.70
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 17 RFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEA 51
          R  G + FPGG  D  D+ +     RE REELG A
Sbjct: 59 RHKGDVSFPGGKCDPADQDVVHTALRETREELGLA 93


>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
           sapiens]
          Length = 1555

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 16  MRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVE 58
           +RFDG  G PGG +  +   L+ G+        G++ A  R E
Sbjct: 928 IRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFE 970


>gi|239752538 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 172

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 45  REELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATR 96
           RE+  +   A ++    +R         VV H +  R  L ELL +EAG+ R
Sbjct: 54  REQCLQKIEAIKLAEQKHREERRRRATVVVGHLHPLRDALPELLGLEAGSRR 105


>gi|113427727 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 181

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 45  REELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATR 96
           RE+  +   A ++    +R         VV H +  R  L ELL +EAG+ R
Sbjct: 63  REQCLQKIEAIKLAEQKHREERRRRATVVVGHLHPLRDALPELLGLEAGSRR 114


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 27   GFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEE 86
            GF+       EDG  REL+  LG +A   R  +     +   S     A  + ++   E+
Sbjct: 1551 GFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAE-WLRKYNPEQ 1609

Query: 87   LLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVG 120
            LL  E      K H  +VL  VR+  Y  ++ +G
Sbjct: 1610 LLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIG 1643


>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
            interacting protein [Homo sapiens]
          Length = 1211

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 28   FVDTQDRSLE--DGLNRELREELGEAAAAF 55
            F++T   +L   DGL RE  EELG+A A F
Sbjct: 1135 FLETAQPALRALDGLQREAMEELGKALAFF 1164


>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
           [Homo sapiens]
          Length = 511

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 45  REELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEV 104
           + E G  +AA   E  +       SG +V A +Y+   TLE   A+  G   A+D    V
Sbjct: 106 KAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGV 165

Query: 105 LGLVRVPLYTLRDGVGGLPTFLE 127
             L    LY     +   P FLE
Sbjct: 166 RVLY---LYPTHKSLKPCPFFLE 185


>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
           [Homo sapiens]
          Length = 531

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 45  REELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEV 104
           + E G  +AA   E  +       SG +V A +Y+   TLE   A+  G   A+D    V
Sbjct: 106 KAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGV 165

Query: 105 LGLVRVPLYTLRDGVGGLPTFLE 127
             L    LY     +   P FLE
Sbjct: 166 RVLY---LYPTHKSLKPCPFFLE 185


>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
           [Homo sapiens]
          Length = 511

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 45  REELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEV 104
           + E G  +AA   E  +       SG +V A +Y+   TLE   A+  G   A+D    V
Sbjct: 106 KAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYSSWGTLEYHNAMVVGTEEAEDGSAGV 165

Query: 105 LGLVRVPLYTLRDGVGGLPTFLE 127
             L    LY     +   P FLE
Sbjct: 166 RVLY---LYPTHKSLKPCPFFLE 185


>gi|189571674 cadherin-like 23 isoform 1 precursor [Homo sapiens]
          Length = 3354

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 101 GLEVLGLVRVPLYTLRDGVGGLPTFLENSFIGSARE 136
           G E  G VR+ +  + D V   PTF +++++G+ RE
Sbjct: 540 GEETTGRVRINVLDVNDNV---PTFQKDAYVGALRE 572


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.142    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,506,404
Number of Sequences: 37866
Number of extensions: 215767
Number of successful extensions: 453
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.