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Search of human proteins with 24307929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24307929 Opa interacting protein 5 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24307929 Opa interacting protein 5 [Homo sapiens] 466 e-132
gi|9506437 chromosome 21 open reading frame 45 [Homo sapiens] 41 7e-04
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 1.7
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 1.7
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 30 2.2
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 30 2.2
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 30 2.2
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 29 3.8
gi|31377634 guanylate binding protein 4 [Homo sapiens] 28 5.0
gi|46409504 hypothetical protein LOC400165 [Homo sapiens] 28 5.0
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 28 6.5
gi|239048909 checkpoint with forkhead and ring finger domains is... 28 8.5
gi|239048905 checkpoint with forkhead and ring finger domains is... 28 8.5
gi|239048862 checkpoint with forkhead and ring finger domains is... 28 8.5
gi|239048792 checkpoint with forkhead and ring finger domains is... 28 8.5
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 28 8.5
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 28 8.5
gi|239048907 checkpoint with forkhead and ring finger domains is... 28 8.5
gi|187607364 tuftelin 1 isoform 2 [Homo sapiens] 28 8.5
gi|9910596 tuftelin 1 isoform 1 [Homo sapiens] 28 8.5
>gi|24307929 Opa interacting protein 5 [Homo sapiens]
Length = 229
Score = 466 bits (1198), Expect = e-132
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP 60
MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP
Sbjct: 1 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP 60
Query: 61 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL 120
AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL
Sbjct: 61 AAGPQLPSWLQPERCAVFQCAQCHAVLADSVHLAWDLSRSLGAVVFSRVTNNVVLEAPFL 120
Query: 121 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV 180
VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV
Sbjct: 121 VGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLLKTKAIV 180
Query: 181 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN 229
NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN
Sbjct: 181 NASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKILSEVTPDQSKPEN 229
>gi|9506437 chromosome 21 open reading frame 45 [Homo sapiens]
Length = 233
Score = 41.2 bits (95), Expect = 7e-04
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 73 ERCAVFQCAQCHAVLADSVHLAWDLSRS-LGAVVFSRVTNNVVLEAPFLVGIEGSLKGST 131
ER VF C+ C L DS L+W S+ ++ V+ NV ++ + G
Sbjct: 78 ERPLVFLCSGCRRPLGDS--LSWVASQEDTNCILLRCVSCNVSVDKEQKLSKREKENGCV 135
Query: 132 YNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLL-KTKAIVNASEMDIQNV 190
L C C + +G+ T L R FCLS + + Y+L ++ + + + ++ N+
Sbjct: 136 LETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGSSEKQIVSEDKELFNL 195
Query: 191 PLSEKIAELKEKIVLTHNRLKSLMKILSE 219
E E+++ + + LK+L L E
Sbjct: 196 ---ESRVEIEKSLTQMEDVLKALQMKLWE 221
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform
5 [Homo sapiens]
Length = 6907
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 12/52 (23%)
Query: 184 EMDIQNVPLSE------------KIAELKEKIVLTHNRLKSLMKILSEVTPD 223
+MDIQN+ E KI E KEK+ + +L + +K L++V+PD
Sbjct: 792 QMDIQNISSQESFQHVLTTGLQAKIQEAKEKVQINVVKLIAALKNLTDVSPD 843
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform
1 [Homo sapiens]
Length = 6885
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 12/52 (23%)
Query: 184 EMDIQNVPLSE------------KIAELKEKIVLTHNRLKSLMKILSEVTPD 223
+MDIQN+ E KI E KEK+ + +L + +K L++V+PD
Sbjct: 792 QMDIQNISSQESFQHVLTTGLQAKIQEAKEKVQINVVKLIAALKNLTDVSPD 843
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 31 ASFTTSMEWDTQVVKGSSPLGPAGLGAEEPAAGPQLPSWLQP 72
A+F WD G P AG GAE AAGP P P
Sbjct: 78 AAFLAGPSWDLPAAPGRDPA--AGRGAEASAAGPPGPPTRPP 117
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 29.6 bits (65), Expect = 2.2
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 1 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP 60
+A++P + S A PP A+ +S + D V+ S+P GPA GA P
Sbjct: 104 LASRPEQGPSGPAAPPGPGVAPAG--AVTISSQDLLVRLDRGVLALSAPPGPATAGAAAP 161
Query: 61 -----AAGPQLPSWLQPERCAVFQCAQCHA 85
A+GP P + RC QCA A
Sbjct: 162 RRAPQASGPSTPGY----RCPEPQCALAFA 187
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 29.6 bits (65), Expect = 2.2
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 1 MAAQPLRHRSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEP 60
+A++P + S A PP A+ +S + D V+ S+P GPA GA P
Sbjct: 104 LASRPEQGPSGPAAPPGPGVAPAG--AVTISSQDLLVRLDRGVLALSAPPGPATAGAAAP 161
Query: 61 -----AAGPQLPSWLQPERCAVFQCAQCHA 85
A+GP P + RC QCA A
Sbjct: 162 RRAPQASGPSTPGY----RCPEPQCALAFA 187
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 9 RSRCATPPRGDFCGGTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEPAAGPQLP 67
R R PRG GG A T + D + GS P G +EP AGP P
Sbjct: 23 RPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPP 81
>gi|31377634 guanylate binding protein 4 [Homo sapiens]
Length = 640
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 167 DKMVCYLLKTKAIVNASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMKIL 217
++++ + LK + + E ++ L+++I +LKEKI T N L+KIL
Sbjct: 561 ERLLKHKLKVQEEMLKEEFQKKSEQLNKEINQLKEKIESTKNEQLRLLKIL 611
>gi|46409504 hypothetical protein LOC400165 [Homo sapiens]
Length = 121
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 23 GTERAIDQASFTTSMEWDTQVVKGSSPLGPAGLGAEEPAAGPQLPSWLQPERCAVFQ 79
G + D ++ +S++ D ++G GP +EP Q SW QP+ C ++
Sbjct: 19 GCQPLKDTRAWASSLKMDPAGLEG----GPRDESRDEPPIRAQAASWDQPQGCLTYK 71
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 40 DTQVVKGSSPLGPAGLGAEEPAAGPQLPSWLQPERCAVFQCAQCHAVLADSV 91
D Q++ L PA A P G +L ++ +FQCA C+ +DS+
Sbjct: 841 DPQLMINPFQLDPATAAALAPGLG-ELSPYISDPALKLFQCAVCNKFTSDSL 891
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 27.7 bits (60), Expect = 8.5
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 71 QPERCAVFQCAQCHAVLADSVHLAWDLSRS-------------LGAVVFSRVTNNVVLEA 117
Q R A QCA C L HL W +R+ LG V NN E+
Sbjct: 409 QDPRVAPQQCAVC---LQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYES 465
Query: 118 PFLVGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSS-----DKMVCY 172
L + + N+L T + +A RG F LS D ++CY
Sbjct: 466 DILKNYLATRGLTWKNML---------------TESLVALQRGVFLLSDYRVTGDTVLCY 510
Query: 173 LLKTKAIVNASEMDIQNVPLSE 194
++ + QN+P SE
Sbjct: 511 CCGLRSFRELTYQYRQNIPASE 532
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 27.7 bits (60), Expect = 8.5
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 71 QPERCAVFQCAQCHAVLADSVHLAWDLSRS-------------LGAVVFSRVTNNVVLEA 117
Q R A QCA C L HL W +R+ LG V NN E+
Sbjct: 489 QDPRVAPQQCAVC---LQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYES 545
Query: 118 PFLVGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSS-----DKMVCY 172
L + + N+L T + +A RG F LS D ++CY
Sbjct: 546 DILKNYLATRGLTWKNML---------------TESLVALQRGVFLLSDYRVTGDTVLCY 590
Query: 173 LLKTKAIVNASEMDIQNVPLSE 194
++ + QN+P SE
Sbjct: 591 CCGLRSFRELTYQYRQNIPASE 612
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 8.5
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 71 QPERCAVFQCAQCHAVLADSVHLAWDLSRS-------------LGAVVFSRVTNNVVLEA 117
Q R A QCA C L HL W +R+ LG V NN E+
Sbjct: 500 QDPRVAPQQCAVC---LQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYES 556
Query: 118 PFLVGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSS-----DKMVCY 172
L + + N+L T + +A RG F LS D ++CY
Sbjct: 557 DILKNYLATRGLTWKNML---------------TESLVALQRGVFLLSDYRVTGDTVLCY 601
Query: 173 LLKTKAIVNASEMDIQNVPLSE 194
++ + QN+P SE
Sbjct: 602 CCGLRSFRELTYQYRQNIPASE 623
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 27.7 bits (60), Expect = 8.5
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 71 QPERCAVFQCAQCHAVLADSVHLAWDLSRS-------------LGAVVFSRVTNNVVLEA 117
Q R A QCA C L HL W +R+ LG V NN E+
Sbjct: 501 QDPRVAPQQCAVC---LQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYES 557
Query: 118 PFLVGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSS-----DKMVCY 172
L + + N+L T + +A RG F LS D ++CY
Sbjct: 558 DILKNYLATRGLTWKNML---------------TESLVALQRGVFLLSDYRVTGDTVLCY 602
Query: 173 LLKTKAIVNASEMDIQNVPLSE 194
++ + QN+P SE
Sbjct: 603 CCGLRSFRELTYQYRQNIPASE 624
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/39 (43%), Positives = 18/39 (46%)
Query: 46 GSSPLGPAGLGAEEPAAGPQLPSWLQPERCAVFQCAQCH 84
GSSPL P LG AGP PS L+ AQ H
Sbjct: 153 GSSPLHPVRLGRVRAHAGPAGPSILRVAPHPALPGAQVH 191
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 22 GGTERAIDQASFTTSMEWDTQVVKG-----------SSPLGPAGLGAEEPAAGPQLP 67
G E +++A T + DT+ + + P PA LGA+ P GP P
Sbjct: 712 GNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGADGPPPGPPTP 768
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 27.7 bits (60), Expect = 8.5
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 71 QPERCAVFQCAQCHAVLADSVHLAWDLSRS-------------LGAVVFSRVTNNVVLEA 117
Q R A QCA C L HL W +R+ LG V NN E+
Sbjct: 460 QDPRVAPQQCAVC---LQPFCHLYWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYES 516
Query: 118 PFLVGIEGSLKGSTYNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSS-----DKMVCY 172
L + + N+L T + +A RG F LS D ++CY
Sbjct: 517 DILKNYLATRGLTWKNML---------------TESLVALQRGVFLLSDYRVTGDTVLCY 561
Query: 173 LLKTKAIVNASEMDIQNVPLSE 194
++ + QN+P SE
Sbjct: 562 CCGLRSFRELTYQYRQNIPASE 583
>gi|187607364 tuftelin 1 isoform 2 [Homo sapiens]
Length = 365
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 168 KMVCYLLKTKAIVNASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMK 215
+M+ L +KA++ + + IQ L EKIA L+ + + H+R++ L++
Sbjct: 279 QMIEQLQNSKAVIQSKDATIQE--LKEKIAYLEAENLEMHDRMEHLIE 324
>gi|9910596 tuftelin 1 isoform 1 [Homo sapiens]
Length = 390
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 168 KMVCYLLKTKAIVNASEMDIQNVPLSEKIAELKEKIVLTHNRLKSLMK 215
+M+ L +KA++ + + IQ L EKIA L+ + + H+R++ L++
Sbjct: 304 QMIEQLQNSKAVIQSKDATIQE--LKEKIAYLEAENLEMHDRMEHLIE 349
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,461,636
Number of Sequences: 37866
Number of extensions: 421830
Number of successful extensions: 1490
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 24
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.