Search of human proteins with 239788462

Search of human proteins with 239788462

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
sapiens]
         (650 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi...  1334   0.0  
gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo sapi...   724   0.0  
gi|40807366 PP3111 protein [Homo sapiens]                              85   2e-16
gi|31742496 dihydrouridine synthase 4-like [Homo sapiens]              77   4e-14
gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo sa...    73   7e-13
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]    46   1e-04
gi|15812180 butyrate response factor 1 [Homo sapiens]                  45   2e-04
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]     45   2e-04
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            35   0.22 
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]                35   0.28 
gi|55741677 SET domain containing 1A [Homo sapiens]                    33   0.63 
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]         33   0.82 
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso...    33   0.82 
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso...    33   0.82 
gi|56549696 E1A binding protein p400 [Homo sapiens]                    33   1.1  
gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens]     32   1.4  
gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens]     32   1.4  
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]            32   1.4  
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]            32   1.4  
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ...    32   1.4  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   1.4  
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa...    32   1.4  
gi|48762712 SH3-binding domain and glutamic acid-rich protein is...    32   1.4  
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap...    32   1.4  
gi|6677929 SH3-binding domain and glutamic acid-rich protein iso...    32   1.4  
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom...    32   1.8  
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom...    32   1.8  
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]           32   1.8  
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]          32   1.8  
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]          32   1.8  

>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 1334 bits (3452), Expect = 0.0
 Identities = 650/650 (100%), Positives = 650/650 (100%)

Query: 1   MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEVG 60
           MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEVG
Sbjct: 1   MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEVG 60

Query: 61  DPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK 120
           DPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK
Sbjct: 61  DPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK 120

Query: 121 NRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFA 180
           NRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFA
Sbjct: 121 NRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFA 180

Query: 181 GAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGPT 240
           GAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGPT
Sbjct: 181 GAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGPT 240

Query: 241 PAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKR 300
           PAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKR
Sbjct: 241 PAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKR 300

Query: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCED 360
           LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCED
Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCED 360

Query: 361 IFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQI 420
           IFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQI
Sbjct: 361 IFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQI 420

Query: 421 VRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQ 480
           VRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQ
Sbjct: 421 VRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQ 480

Query: 481 YIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEIKEQRHWD 540
           YIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEIKEQRHWD
Sbjct: 481 YIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEIKEQRHWD 540

Query: 541 ISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINE 600
           ISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINE
Sbjct: 541 ISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINE 600

Query: 601 RPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK 650
           RPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK
Sbjct: 601 RPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK 650


>gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo
           sapiens]
          Length = 408

 Score =  724 bits (1870), Expect = 0.0
 Identities = 351/357 (98%), Positives = 353/357 (98%)

Query: 294 RPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALL 353
           + C +  LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALL
Sbjct: 52  KTCRETELDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALL 111

Query: 354 KRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNR 413
           KRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNR
Sbjct: 112 KRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNR 171

Query: 414 STKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRY 473
           STKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRY
Sbjct: 172 STKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRY 231

Query: 474 TKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEI 533
           TKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEI
Sbjct: 232 TKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGALLKPWLFTEI 291

Query: 534 KEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLER 593
           KEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLER
Sbjct: 292 KEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLER 351

Query: 594 LPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK 650
           LPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK
Sbjct: 352 LPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAYK 408



 Score =  121 bits (303), Expect = 2e-27
 Identities = 58/59 (98%), Positives = 59/59 (100%)

Query: 1  MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEV 59
          MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETE+
Sbjct: 1  MAEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEL 59


>gi|40807366 PP3111 protein [Homo sapiens]
          Length = 473

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 10/169 (5%)

Query: 388 DFVDINVGCPIDLVYKKGG-GCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNL 446
           D +D+N+GCP  ++ K+G  G  L +     Q+++   ++ L VP+T KIR  V   ++ 
Sbjct: 100 DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIR--VFPEIDK 156

Query: 447 AHRLLPELRDWGVALVTLHGRSREQR--YTKLADWQYIEECVQAASPMPLFGNGDILSFE 504
             R    L   G  L+T+HGR++EQ+   +  A W++I + V+ A  +P+F NG+I   +
Sbjct: 157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQ 215

Query: 505 DANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRD 552
           D  R ++ TGV G+M A G L  P LF E +    W++ + E LDI+R+
Sbjct: 216 DVERCLRDTGVQGVMSAEGNLHNPALF-EGRSPAVWEL-AEEYLDIVRE 262


>gi|31742496 dihydrouridine synthase 4-like [Homo sapiens]
          Length = 317

 Score = 77.4 bits (189), Expect = 4e-14
 Identities = 55/228 (24%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 310 APLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGA 369
           AP+     L FR + +++  D+    M V  + ++   +  +    +Q +    VQ    
Sbjct: 32  APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAAN 91

Query: 370 FPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLD 429
               ++  A ++      + +DIN GCP      +G G  L+N+    Q +V+ +   ++
Sbjct: 92  DARLLSDAARIVCPYA--NGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149

Query: 430 VP-LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQA 488
            P  +V I+  + + +     L  +    GV+ +T+HGR+ E+R+  +  +  I + ++ 
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV-HYDSI-KIIKE 207

Query: 489 ASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKE 535
              +P+  NGDI S ++A    + TG  G+M+ARG L  P +F   +E
Sbjct: 208 NMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEE 255


>gi|8923374 dihydrouridine synthase 2-like, SMM1 homolog [Homo
           sapiens]
          Length = 493

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 37/251 (14%)

Query: 306 KLYLAPLTTCGNLPFRRICKRFGADVT-CGE-----MAVCTNLLQGQMSE---------- 349
           KL LAP+   G LP R +   +GAD+  C E     M  C  ++   +S           
Sbjct: 13  KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72

Query: 350 -WALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDF--VDINVGCPIDLVYKKGG 406
            +   +R Q   +F +    A      + A  ++R VE D   +D+N+GCP     K G 
Sbjct: 73  VFRTCEREQNRVVFQMGTSDA------ERALAVARLVENDVAGIDVNMGCPKQYSTKGGM 126

Query: 407 GCALMNRSTKFQQIVRGMNQVLDVPLTVKIR--TGVQERVNLAHRLLPELRDWGVALVTL 464
           G AL++   K ++I+  + +    P+T KIR    +++ ++L  R    +   G+A + +
Sbjct: 127 GAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKR----IERTGIAAIAV 182

Query: 465 HGRSREQRYTKLADWQYIEECVQAASPMPLFGNG----DILSFEDANRAMQ-TGVTGIMI 519
           HGR RE+R       + I+      S +P+  NG     I  + D     Q T  + +M+
Sbjct: 183 HGRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDIEDFRQATAASSVMV 241

Query: 520 ARGALLKPWLF 530
           AR A+  P +F
Sbjct: 242 ARAAMWNPSIF 252


>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
          Length = 326

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 43/182 (23%)

Query: 115 PTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPR-----CVLFETFG 169
           P+ Y K  LC +  +  + +C +G +C+F H +G   E + A+  P+     C  F   G
Sbjct: 101 PSRY-KTELCRTFSE--SGRCRYGAKCQFAHGLG---ELRQANRHPKYKTELCHKFYLQG 154

Query: 170 RCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAE 229
           RCPYG  C F          +   E+LAA G  PP +R             + + F    
Sbjct: 155 RCPYGSRCHFI---------HNPSEDLAAPG-HPPVLR-------------QSISFSGLP 191

Query: 230 QALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQQVP-------AGPGTSTPPSSPVRTC 282
              R  +  P P  A P  +++  +P         +P       A PGT      P   C
Sbjct: 192 SGRR--TSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC 249

Query: 283 GP 284
            P
Sbjct: 250 CP 251


>gi|15812180 butyrate response factor 1 [Homo sapiens]
          Length = 338

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 91  AEPGEQL-QTQKRARGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVG- 148
           +E GE+L  TQK+  G       V  + Y K  LC    +  A  C +GD+C+F H +  
Sbjct: 92  SEGGERLLPTQKQPGGGQ-----VNSSRY-KTELCRPFEENGA--CKYGDKCQFAHGIHE 143

Query: 149 -RYLETKPADLGPRCVLFETFGRCPYGVTCRF 179
            R L   P      C  F T G CPYG  C F
Sbjct: 144 LRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 175


>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
          Length = 494

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 91  AEPGEQLQTQKRARGQNKGR--PHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVG 148
           +E G++ Q     + Q KG     +  T Y K  LC     E +  C +G++C+F H   
Sbjct: 125 SENGDRSQHLLHLQQQQKGGGGSQINSTRY-KTELCRPF--EESGTCKYGEKCQFAHGFH 181

Query: 149 --RYLETKPADLGPRCVLFETFGRCPYGVTCRFA--GAHLRPEGQNLVQEELAARGTQ 202
             R L   P      C  F T G CPYG  C F       RP        +L A GT+
Sbjct: 182 ELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTR 239


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 2   AEGTAEAPLENGGGGDSGAGALERGVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEVGD 61
           A G AE P      G  GA    RG A +K       ++  +  EA+G      ETE  +
Sbjct: 34  AGGEAEGP-----EGSEGAEEAPRGAAAVKEAGGGGPDRGPE-AEARGTRGAHGETEAEE 87

Query: 62  PAGNELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDKN 121
            A      PE   +     +T+  Q  E A PG   Q + R   Q +      P   ++ 
Sbjct: 88  GA------PEGAEVPQGGEETSGAQQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEA 141

Query: 122 RLCPSLIQESAA 133
              P + + SA+
Sbjct: 142 EQRPEVPEGSAS 153


>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
          Length = 2017

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 181  GAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQ---QLRKREVRFERAEQALRR--- 234
            G  L+ E       EL  R +       GL+  L +   Q R  E +      ALRR   
Sbjct: 1386 GLELKLEAARAEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLG 1445

Query: 235  FSQGPTPAAAVPEGTAAEGAPRQEN-----------CGAQQVPAGPGTSTPPSSP 278
              + P+PA     G+ A  AP + +           C     P  PG +T P+SP
Sbjct: 1446 LGRAPSPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASP 1500


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 239  PTPAAA---VPE---GTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVR 292
            PTPA     VPE   G+     P QE   A+  PAGP   +PPS+P+R   P        
Sbjct: 1087 PTPAPVEVPVPERVAGSPVTPLPEQEASPAR--PAGPTEESPPSAPLRPPEPPAGPPAPA 1144

Query: 293  LRPCEK 298
             RP E+
Sbjct: 1145 PRPDER 1150



 Score = 29.6 bits (65), Expect = 9.1
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 189 QNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEG 248
           Q +   EL   G+  P       KAL ++ +      E AE   RR S   T  AA P G
Sbjct: 175 QRMKYYELIVNGSYTPQTVPTGGKALSEKFQGSGAATETAES--RRRSSSDT--AAYPAG 230

Query: 249 TAAEGAP---------RQENCGAQQVPAGPGTSTPPSS 277
           T A G P            +   Q  P+  G  TP SS
Sbjct: 231 TTAVGTPGNGTPCSQDTSFSSSRQDTPSSFGQFTPQSS 268


>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
          Length = 291

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 36/134 (26%)

Query: 85  GQTEEAAEPGEQLQTQKRA-----RGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGD 139
           G  EE  +P E+ Q   +A       + KG+           ++C   ++    KC  GD
Sbjct: 164 GSQEEDGKPKEKQQHLSQAFINQHTVERKGK-----------QICKYFLER---KCIKGD 209

Query: 140 RCRFLHD--------VGRYLETKPADLGPRCV---------LFETFGRCPYGVTCRFAGA 182
           +C+F HD        + ++        G  C+          + T  +C  G  C+F+ A
Sbjct: 210 QCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHA 269

Query: 183 HLRPEGQNLVQEEL 196
            L PE Q L+ + L
Sbjct: 270 PLTPETQELLAKVL 283


>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3p [Homo sapiens]
          Length = 476

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 3   EGTAEAPLENGGGGDSGAGALERGV--APIKRQYLTTKEQFHQFLEAKGQEKTCRETEVG 60
           E T E P E G   D+G G  E     A +K + +    +  Q     G +K  R+ E  
Sbjct: 292 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVE-- 349

Query: 61  DPAGNELAEPEAKRIRLEDGQ--TADGQTEEAAEPGEQLQTQKRARGQNKGR 110
               ++  E EA+R  ++DG+   A  + E  +   E  Q   +  GQ++G+
Sbjct: 350 ---RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGK 398


>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3pdelta [Homo sapiens]
          Length = 443

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 3   EGTAEAPLENGGGGDSGAGALERGV--APIKRQYLTTKEQFHQFLEAKGQEKTCRETEVG 60
           E T E P E G   D+G G  E     A +K + +    +  Q     G +K  R+ E  
Sbjct: 259 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVE-- 316

Query: 61  DPAGNELAEPEAKRIRLEDGQ--TADGQTEEAAEPGEQLQTQKRARGQNKGR 110
               ++  E EA+R  ++DG+   A  + E  +   E  Q   +  GQ++G+
Sbjct: 317 ---RSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGK 365


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 238  GPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCE 297
            GP+PA   P+     G P +    A  V   PGT++ P+SP+   G  T E+  RL    
Sbjct: 1661 GPSPAPLTPQ----VGVPGRVAVNALAV-GEPGTASKPASPI---GGPTQEEKTRLL--- 1709

Query: 298  KKRLDIRGKLYLAPLTTCGNLP 319
            K+RLD   ++YL     C   P
Sbjct: 1710 KERLD---QIYLVNERRCSQAP 1728


>gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens]
          Length = 746

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 236 SQGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRP 295
           +QG  P +  P G    GAP  E+    Q  A P  S+PP+SP++   P    D+   +P
Sbjct: 658 AQGLRPESPPPAGPLLNGAPAGES---PQPKAAPEASSPPASPLQHLLPGKAVDLGPPKP 714

Query: 296 CEKK 299
            +++
Sbjct: 715 SDQE 718


>gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens]
          Length = 733

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 236 SQGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRP 295
           +QG  P +  P G    GAP  E+    Q  A P  S+PP+SP++   P    D+   +P
Sbjct: 645 AQGLRPESPPPAGPLLNGAPAGES---PQPKAAPEASSPPASPLQHLLPGKAVDLGPPKP 701

Query: 296 CEKK 299
            +++
Sbjct: 702 SDQE 705


>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 501

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 146 DVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPS 205
           + GR L    A LGP      +FG  P+  +         PE  + +    A RG +  S
Sbjct: 329 EAGRRLRRTAAPLGPVAGAGSSFGGRPHRPSLALGSDRRSPEAPHYLLWAAAVRGQEAHS 388

Query: 206 IRNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQ-Q 264
           +           L+ R  R   +++  RR   G     A   GTAA GA R    GA+  
Sbjct: 389 L---------WPLQPRARRQGGSDRHRRRGQSG-----ASGLGTAAAGAERTSPVGARPP 434

Query: 265 VPAGPGTSTPPS 276
            PA   T+T P+
Sbjct: 435 PPARLVTNTAPT 446


>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 591

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 146 DVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPS 205
           + GR L    A LGP      +FG  P+  +         PE  + +    A RG +  S
Sbjct: 419 EAGRRLRRTAAPLGPVAGAGSSFGGRPHRPSLALGSDRRSPEAPHYLLWAAAVRGQEAHS 478

Query: 206 IRNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQ-Q 264
           +           L+ R  R   +++  RR   G     A   GTAA GA R    GA+  
Sbjct: 479 L---------WPLQPRARRQGGSDRHRRRGQSG-----ASGLGTAAAGAERTSPVGARPP 524

Query: 265 VPAGPGTSTPPS 276
            PA   T+T P+
Sbjct: 525 PPARLVTNTAPT 536


>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
           sapiens]
          Length = 591

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 146 DVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPS 205
           + GR L    A LGP      +FG  P+  +         PE  + +    A RG +  S
Sbjct: 419 EAGRRLRRTAAPLGPVAGAGSSFGGRPHRPSLALGSDRRSPEAPHYLLWAAAVRGQEAHS 478

Query: 206 IRNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQ-Q 264
           +           L+ R  R   +++  RR   G     A   GTAA GA R    GA+  
Sbjct: 479 L---------WPLQPRARRQGGSDRHRRRGQSG-----ASGLGTAAAGAERTSPVGARPP 524

Query: 265 VPAGPGTSTPPS 276
            PA   T+T P+
Sbjct: 525 PPARLVTNTAPT 536


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 179 FAGAHLRPEGQNLVQEELAARGTQPPSIRN---GLDKALQQQLRKREVRFERAEQALRRF 235
           F   H   +G+  +Q +L      PP+  +   GLD   +   ++RE   +R+       
Sbjct: 446 FLSLHAESDGEGALQVDLGEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSP---- 501

Query: 236 SQGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSP 278
           +  P PAAA    T  +    ++  G  +  A   + T P+ P
Sbjct: 502 APAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPP 544


>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
           sapiens]
          Length = 669

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 60/248 (24%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 42  HQFLEAKGQEKTCRETEVGDPAGNELAEPEAKRIRLEDGQTADGQTE-EAAEPGEQLQTQ 100
           H  LE K +++     ++ D     L E EA   +  + +    Q E EA       Q Q
Sbjct: 326 HCVLEGKLRDREAELQQLRD----SLDENEATMCQAYEERQRHWQREREALREDCAAQAQ 381

Query: 101 KRARGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGP 160
           +  R Q   +  V     +K +L     Q    +     RC  L       E +  +LGP
Sbjct: 382 RAQRAQQLLQLQVFQLQQEKRQLQDDFAQLLQEREQLERRCATL-------EREQRELGP 434

Query: 161 RCVLFETFGRCPYGVTCRFAG-------------AHLRPEGQNLVQEELAARGTQPP-SI 206
           R  L ET         C+ +G             A L  +G  LV   +A R  +    +
Sbjct: 435 R--LEETKWE-----VCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREARATLRV 487

Query: 207 RNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQQVP 266
             G  + LQ+  R RE+  E   Q L+R  Q             AE A      G ++ P
Sbjct: 488 SEGRARGLQEAARARELELEACSQELQRHRQEAEQLREKAGQLDAEAA------GLREPP 541

Query: 267 AGPGTSTP 274
             P T+ P
Sbjct: 542 VPPATADP 549


>gi|48762712 SH3-binding domain and glutamic acid-rich protein
           isoform b [Homo sapiens]
          Length = 128

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 46  EAKGQEKTCR--ETEVGDPAGNELAE-PEAKRIRLEDGQTADGQTEEAA---EPGEQLQT 99
           ++KG EK     ETE       ++   PEA+    E+G+TA  +TEE A     GE  + 
Sbjct: 54  DSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEE 113

Query: 100 QKRARGQNKG 109
           ++ A G+  G
Sbjct: 114 EETAEGEEPG 123


>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
           sapiens]
          Length = 886

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/70 (27%), Positives = 25/70 (35%)

Query: 134 KCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQ 193
           KC  GD C++ H               +C   +  G CP G  C FA     P   +L  
Sbjct: 347 KCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQP 406

Query: 194 EELAARGTQP 203
               +  TQP
Sbjct: 407 SSAVSSPTQP 416


>gi|6677929 SH3-binding domain and glutamic acid-rich protein
           isoform a [Homo sapiens]
          Length = 239

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 46  EAKGQEKTCR--ETEVGDPAGNELAE-PEAKRIRLEDGQTADGQTEEAA---EPGEQLQT 99
           ++KG EK     ETE       ++   PEA+    E+G+TA  +TEE A     GE  + 
Sbjct: 165 DSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEE 224

Query: 100 QKRARGQNKG 109
           ++ A G+  G
Sbjct: 225 EETAEGEEPG 234


>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
            sapiens]
          Length = 1108

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 46   EAKGQEKTCRETEVGDPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPG----EQLQTQK 101
            E K  E+   E E   P G+E  E E + +  E+ + A+ + EEA   G    ++ ++Q 
Sbjct: 1027 EDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAESQA 1086

Query: 102  RARGQNKG 109
             + GQ  G
Sbjct: 1087 SSLGQKVG 1094


>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
            sapiens]
          Length = 1124

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 46   EAKGQEKTCRETEVGDPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPG----EQLQTQK 101
            E K  E+   E E   P G+E  E E + +  E+ + A+ + EEA   G    ++ ++Q 
Sbjct: 1043 EDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAESQA 1102

Query: 102  RARGQNKG 109
             + GQ  G
Sbjct: 1103 SSLGQKVG 1110


>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
          Length = 2390

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 210  LDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENC--GAQQVPA 267
            L+K    + R++E + +R E+  R+    P P A+VP G    G    +    G Q  P 
Sbjct: 2072 LEKLTALEEREKERKRKREEEERRKQPPAPEPTASVPPGDLVGGQTASDTTWDGTQPRPP 2131

Query: 268  GPGTSTPPSSPVRTCG 283
             P T  P  + V T G
Sbjct: 2132 -PSTQAPSVNGVCTDG 2146


>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
          Length = 1044

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 193 QEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP---------TPA- 242
           Q+E A R  +    R     A+Q+  +KR +R ++A  A R   + P          PA 
Sbjct: 319 QKEAARRKAREEKARQARRAAIQELQQKRALRAQKASTAERGPPENPRETRVPGMRQPAQ 378

Query: 243 --AAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSS 277
             +  P GTA + A +  N G     AGPG    P+S
Sbjct: 379 ELSPTPGGTAHQ-ALKANNTGGGLPAAGPGDRCLPTS 414


>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
          Length = 1080

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 193 QEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP---------TPA- 242
           Q+E A R  +    R     A+Q+  +KR +R ++A  A R   + P          PA 
Sbjct: 319 QKEAARRKAREEKARQARRAAIQELQQKRALRAQKASTAERGPPENPRETRVPGMRQPAQ 378

Query: 243 --AAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSS 277
             +  P GTA + A +  N G     AGPG    P+S
Sbjct: 379 ELSPTPGGTAHQ-ALKANNTGGGLPAAGPGDRCLPTS 414


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,551,139
Number of Sequences: 37866
Number of extensions: 1394832
Number of successful extensions: 5895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 5793
Number of HSP's gapped (non-prelim): 162
length of query: 650
length of database: 18,247,518
effective HSP length: 109
effective length of query: 541
effective length of database: 14,120,124
effective search space: 7638987084
effective search space used: 7638987084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.