Guide to the Human Genome
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Name: LRP11 Sequence: fasta or formatted (500aa) NCBI GI: 239787919
Description:

low density lipoprotein receptor-related protein 11

Referenced in:

Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         55           2
 C cysteine            3.6         18           2
 D aspartate           5.4         27           2
 E glutamate           5.8         29           2
 F phenylalanine       2.0         10           2
 G glycine             8.8         44           4
 H histidine           2.2         11           1
 I isoleucine          2.2         11           2
 K lysine              3.6         18           2
 L leucine            11.4         57           4
 M methionine          1.4          7           1
 N asparagine          1.8          9           1
 P proline             7.6         38           2
 Q glutamine           4.8         24           2
 R arginine            6.4         32           2
 S serine              8.8         44           4
 T threonine           4.8         24           2
 V valine              5.4         27           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 11... 
SPINT1                0.086   serine peptidase inhibitor, Kunitz type 1 isoform 2 ...
SPINT1                0.086   serine peptidase inhibitor, Kunitz type 1 isoform 2 p...
SPINT1                0.082   serine peptidase inhibitor, Kunitz type 1 isoform 1 ...
KIAA0319L             0.065   dyslexia susceptibility 2-like 
KIAA0319              0.054   KIAA0319 
LRP2                  0.021   low density lipoprotein-related protein 2 
LRP8                  0.020   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.020   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.020   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.020   low density lipoprotein receptor-related protein 8 i...
VLDLR                 0.020   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.020   very low density lipoprotein receptor isoform a [Hom...
LRP1                  0.019   low density lipoprotein-related protein 1 
SORL1                 0.019   sortilin-related receptor containing LDLR class A rep...
LRP4                  0.019   low density lipoprotein receptor-related protein 4 ...
LDLRAD3               0.019   low density lipoprotein receptor class A domain cont...
SSPO                  0.019   SCO-spondin 
PRSS7                 0.017   enterokinase precursor 
LDLR                  0.017   low density lipoprotein receptor precursor 
LRP1B                 0.017   low density lipoprotein-related protein 1B precursor...
LRP5                  0.016   low density lipoprotein receptor-related protein 5 ...
LRP12                 0.016   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.016   low density lipoprotein-related protein 12 isoform a ...
TMPRSS7               0.015   transmembrane protease, serine 7 
LRP10                 0.015   low density lipoprotein receptor-related protein 10 ...
LRP6                  0.014   low density lipoprotein receptor-related protein 6 ...
CORIN                 0.014   corin 
LRP3                  0.014   low density lipoprotein receptor-related protein 3 ...
TMPRSS2               0.013   transmembrane protease, serine 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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