Guide to the Human Genome
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Name: LOC100289468 Sequence: fasta or formatted (203aa) NCBI GI: 239742323
Description:

PREDICTED: hypothetical protein XP_002342491

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         21           3
 C cysteine            2.0          4           1
 D aspartate           4.4          9           1
 E glutamate           5.9         12           2
 F phenylalanine       2.5          5           1
 G glycine            12.8         26           3
 H histidine           3.0          6           2
 I isoleucine          2.5          5           1
 K lysine              3.9          8           1
 L leucine            11.3         23           2
 M methionine          0.5          1           1
 N asparagine          2.0          4           2
 P proline             4.4          9           2
 Q glutamine           2.5          5           2
 R arginine            6.9         14           2
 S serine              8.9         18           2
 T threonine           4.9         10           1
 V valine              9.9         20           2
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342491 
LOC100291595          1.000   PREDICTED: hypothetical protein XP_002345793 
LOC100291431          1.000   PREDICTED: hypothetical protein XP_002346654 
GTF2F1                0.008   general transcription factor IIF, polypeptide 1, 74...
RAB11FIP5             0.008   RAB11 family interacting protein 5 (class I) 
LOC100292088          0.008   PREDICTED: hypothetical protein XP_002346321 
LOC728767             0.008   PREDICTED: hypothetical protein 
LOC728767             0.008   PREDICTED: hypothetical protein 
LOC389906             0.005   PREDICTED: similar to Serine/threonine-protein kina...
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.005   mitogen-activated protein kinase 8 interacting prote...
HERC1                 0.005   guanine nucleotide exchange factor p532 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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