Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756935
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ... 518 e-147
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ... 518 e-147
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ... 516 e-147
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 42 4e-04
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 41 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 39 0.005
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 39 0.005
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 38 0.009
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.011
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 37 0.011
gi|117956393 glycine/arginine rich protein 1 [Homo sapiens] 37 0.019
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 36 0.025
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 36 0.025
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 36 0.025
gi|55741655 anoctamin 8 [Homo sapiens] 36 0.033
gi|55956910 meningioma 1 [Homo sapiens] 36 0.033
gi|23397642 GREB1 protein isoform a [Homo sapiens] 36 0.033
gi|224994251 myotubularin related protein 11 isoform a [Homo sap... 36 0.033
gi|89111941 myotubularin related protein 11 isoform b [Homo sapi... 36 0.033
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 36 0.033
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens] 35 0.043
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 35 0.043
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 35 0.043
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 35 0.043
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 35 0.043
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 35 0.043
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 35 0.043
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 35 0.043
gi|98986321 gliomedin [Homo sapiens] 35 0.043
>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
Length = 237
Score = 518 bits (1334), Expect = e-147
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
Query: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
sapiens]
Length = 237
Score = 518 bits (1334), Expect = e-147
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
Query: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
sapiens]
Length = 237
Score = 516 bits (1330), Expect = e-147
Identities = 236/237 (99%), Positives = 236/237 (99%)
Query: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1 MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
Query: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61 RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPAR LGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARALGSAFHGAPRP 237
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 42.4 bits (98), Expect = 4e-04
Identities = 50/156 (32%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 6 CILVAPAAAWTLGTSSPEPGSPSIQGPDRP---QNPRPEAGKDGARRSPGPT---RQGQG 59
C L +P+ A LG SSP P SP RP + PRP AG RSP + G
Sbjct: 423 CKLDSPSGA-ALGLSSPSPDSPDAAPEARPRPRRRPRPPAGSPA--RSPAHSLGLNFGDA 479
Query: 60 QRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGC 119
R+ P G GLP QP PG W S P W A G
Sbjct: 480 ARQTP----RHGLSALSAPGLPGPGQPAGPGAWAPPLDSPGTPSPDG-PWCFSPEGAQGA 534
Query: 120 PSALVTPQAPA-VPSPGYVPAPSFCHPHQWAASEPR 154
L P A P PG S + A +EPR
Sbjct: 535 GGVLFAPFGRAGAPGPG---GGSDLRRREAARAEPR 567
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/223 (25%), Positives = 79/223 (35%), Gaps = 44/223 (19%)
Query: 25 GSPSIQGPDRPQNPRPEAG------KDGARRSPGPTRQGQGQRRL------PVGASFQGW 72
G +Q P P P AG GARR P +Q + +RR P GA+ +
Sbjct: 82 GEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAA 141
Query: 73 RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
NG LP S+ PG+ + G P P PA
Sbjct: 142 DAACNG-LPGSDSRRAPGKGG---------------------GSKGSPGQ--RPPVPAAA 177
Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSPSKAD 192
+ G A + C A ++ R W C ++ L +GA P++A
Sbjct: 178 AAG-AQARASCAA---AKTQGRCCWE----CLQNNLAVLPGELGALPHSATAEEKPARAL 229
Query: 193 PALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAP 235
PA +RG S A P P ++AH PA V + +P
Sbjct: 230 PAQDDRGASREREEGALAEPAPVPAVAHSPPATVEAATSRASP 272
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 0.002
Identities = 71/243 (29%), Positives = 88/243 (36%), Gaps = 54/243 (22%)
Query: 3 SGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRR 62
+GSC V AAA G PEP GP +P P A + G PGP G G
Sbjct: 134 AGSCAPVPAAAAVAAG---PEPAPA---GPAKPAGPAALAARAGPGPGPGP---GPGPGP 184
Query: 63 LPVGASFQGWRGRQNG--GLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
P + G NG L S P S + P+A LL L P
Sbjct: 185 GPGKPAGPGAAQTLNGSAALLNSHHAAAPA------VSLVNNGPAA----LLPLPKPAAP 234
Query: 121 SALV---------TPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTE 171
++ P APA PSP PAP+ AA+ P P T
Sbjct: 235 GTVIQTPPFVGAAAPPAPAAPSPPAAPAPA-----APAAAPPPP---------PPAPATL 280
Query: 172 EQAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAF 231
+ G A P +++P+ PA + G S AAP+P PA PA V G
Sbjct: 281 ARPPGHPAGPP--TAAPAVPPPAAAQNGGS----AGAAPAPAPAAGG----PAGVSGQPG 330
Query: 232 HGA 234
GA
Sbjct: 331 PGA 333
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
PG P +GP + + E GKDG + PGP G LP QG RG + GLP
Sbjct: 186 PGMPGFKGPTGYKGEQGEVGKDGEKGDPGP----PGPAGLPGSVGLQGPRGLR--GLP 237
Score = 29.3 bits (64), Expect = 3.1
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 14 AWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWR 73
A LG + P G P + G R EAG G+ + GP QG P FQG +
Sbjct: 354 AGELGEAGPS-GEPGVPGDAGMPGERGEAGHRGSAGALGP----QGPPGAPGVRGFQGQK 408
Query: 74 GRQ-NGGLP 81
G + GLP
Sbjct: 409 GSMGDPGLP 417
Score = 28.9 bits (63), Expect = 4.1
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG 78
PG + G D P P+ G+ G+ PGP G G + LP G G G
Sbjct: 82 PGVDGLTGRDGPPGPKGAPGERGSLGPPGP--PGLGGKGLPGPPGEAGVSGPPGG 134
Score = 28.9 bits (63), Expect = 4.1
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 25 GSPSIQGPDRPQNPRPEAGKDGARRSP---GPT--------RQGQGQR--RLPVGASFQG 71
G P GP P P G GAR P GPT R QG R + GA G
Sbjct: 554 GRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613
Query: 72 WRGRQNGGLPRSEQPYRPGRWREGWRSCSGD 102
G Q P+ PG ++G G+
Sbjct: 614 PEGDQGPQGPQGV----PGTSKDGQDGAPGE 640
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 38.5 bits (88), Expect = 0.005
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 173 QAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFH 232
+++ D CP+ S SPS +L E G + DWG AA P PL LGS+
Sbjct: 597 RSLARDPLCPSRSPSPSAGPLSLAEGGAEDADWGVAAFCPA---FFEDPLGTSPLGSS-- 651
Query: 233 GAP 235
GAP
Sbjct: 652 GAP 654
Score = 28.5 bits (62), Expect = 5.3
Identities = 39/140 (27%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Query: 90 GRWREGWRSCSGD---LPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPH 146
G WR + + P +W+ A GCPS TP+A P PGY P
Sbjct: 676 GHWRSNVSANNNSGSRCPESWDPVSAGGHAEGCPSPKQTPRAS--PEPGY-PGEPLLGLQ 732
Query: 147 QWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSP-SKADPALGERGVSEVDW 205
+A EP G C+ L V T A S +A+P L
Sbjct: 733 AASAQEPGCCPGLPHLCSAQGLAPAPCLVTPSWTETASSGGDHPQAEPKLATEAEGTTGP 792
Query: 206 GEAAPS-PTPAHSMAHPLPA 224
PS P+P+ A PLP+
Sbjct: 793 RLPLPSVPSPSQEGA-PLPS 811
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 37.7 bits (86), Expect = 0.009
Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 25/191 (13%)
Query: 47 ARRSPGPTRQGQGQRRL----PVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGD 102
ARR PGP R + P + + +G R+ P PGR +
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQAR------- 63
Query: 103 LPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGY---VPAPSFCHPHQWAASEPRPFWGY 159
P A L + PS P PA PSPG P+ P +++ +
Sbjct: 64 -PPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISE 122
Query: 160 RGGCTRSM--LCTEEQAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHS 217
C + L +A+ A A +S +P G E GE AP+ H+
Sbjct: 123 LASCLQRARELGARVRALKASAQDAGESCTPE-------AEGRPEEPCGEKAPAYQRFHA 175
Query: 218 MAHP-LPARVL 227
+A P LP VL
Sbjct: 176 LAQPGLPGLVL 186
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.4 bits (85), Expect = 0.011
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 10 APAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPT--------RQGQGQR 61
AP + G EPG +QGP P E GK GAR PGPT R G G R
Sbjct: 438 APGSKGDTGAKG-EPGPVGVQGPPGPAG---EEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 62 RLPVGASFQGWRG 74
P G +G
Sbjct: 494 GFPGADGVAGPKG 506
Score = 31.6 bits (70), Expect = 0.63
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 25 GSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG-QGQRRLPVGASFQG 71
GSP QG P P EAGK G + PG P G +G+R P QG
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQG 689
Score = 31.2 bits (69), Expect = 0.82
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 10 APAAAWTLGTSSPE-----PGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
A AA G + P PG+ +G PQ PR G G R PGP
Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 25 GSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
GSP GPD P AG+DG PGP
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGP 570
Score = 29.6 bits (65), Expect = 2.4
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 28/88 (31%)
Query: 17 LGTSSPE--PGSPSIQGPDRPQNPRPEAGKDGA------RRSPGPTRQG----------- 57
+G S P PG P GP Q P E G+ GA R PGP +
Sbjct: 181 MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 58 ---------QGQRRLPVGASFQGWRGRQ 76
QG R LP A G +G +
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGMKGHR 268
Score = 29.6 bits (65), Expect = 2.4
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
PGSP QGP P G G+ +PG G LP G RGR P
Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAPGK----DGLNGLPGPIGPPGPRGRTGDAGP 1176
Score = 29.3 bits (64), Expect = 3.1
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG-PTRQGQ-GQRRLPVGASFQGWRGRQNGGLP 81
PG P +GP PQ P G G PG P +G G + P QG G P
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG------P 462
Query: 82 RSEQPYRPGRWREG 95
E+ R R G
Sbjct: 463 AGEEGKRGARGEPG 476
Score = 28.5 bits (62), Expect = 5.3
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 10 APAAAWTLGTSSPE-----PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLP 64
+P A G + P PG+P GP P AGK G R GP G P
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGAPGPVGP------AGKSGDRGETGPA--GPAGPVGP 1080
Query: 65 VGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSG 101
VGA +G G Q + E + R +G R SG
Sbjct: 1081 VGA--RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Score = 28.1 bits (61), Expect = 6.9
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG-PTRQGQGQRRLPVGASFQGWRGRQN-GGLP 81
PG GP P + G DG +PG P QG +R VG G RG + GLP
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG--LPGQRGERGFPGLP 976
Query: 82 -RSEQPYRPG 90
S +P + G
Sbjct: 977 GPSGEPGKQG 986
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 18 GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTR-QG-QGQRRLPVGASFQGWRG- 74
G G S+ GP P PR G GA PGP QG G+ P + G RG
Sbjct: 166 GYDEKSTGGISVPGPMGPSGPRGLPGPPGA---PGPQGFQGPPGEPGEPGASGPMGPRGP 222
Query: 75 ----RQNGGLPRSEQPYRPG 90
+NG + +P RPG
Sbjct: 223 PGPPGKNGDDGEAGKPGRPG 242
Score = 27.7 bits (60), Expect = 9.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
EPGSP G PR G+ G +PGP
Sbjct: 288 EPGSPGENGAPGQMGPRGLPGERGRPGAPGP 318
Score = 27.7 bits (60), Expect = 9.0
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRG 74
PG+ + GP P R G G + SPG + G+ LP G G
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR-PGEAGLPGAKGLTGSPG 545
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 37.4 bits (85), Expect = 0.011
Identities = 43/132 (32%), Positives = 51/132 (38%), Gaps = 26/132 (19%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGR--QNG--- 78
PG P IQG P+ P G+ GA+ SPG +G P GAS G GR Q G
Sbjct: 799 PGLPGIQGLPGPRGPPGPTGEKGAQGSPGV--KGATGPVGPPGASVSGPPGRDGQQGQTG 856
Query: 79 --GLPRSEQPYRPGRWREGWRSC--SGDL--------PSAWNWFLLCLSACGCPSALVTP 126
G P + P R + G SC GDL P W + + P P
Sbjct: 857 LRGTPGEKGP-RGEKGEPGECSCPSQGDLIFSGMPGAPGLW------MGSSWQPGPQGPP 909
Query: 127 QAPAVPSPGYVP 138
P P P VP
Sbjct: 910 GIPGPPGPPGVP 921
Score = 30.8 bits (68), Expect = 1.1
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGRQNGGLPR 82
PGS + GP P PR E G G G QG QGQ P G+ G+ P
Sbjct: 1122 PGSEGLPGPPGPAGPRGERGPQGNSGEKGD--QGFQGQPGFPGPPGPPGFPGKVGSPGPP 1179
Query: 83 SEQPYRPGRWREGWRSCSG 101
Q + EG R SG
Sbjct: 1180 GPQAEKGS---EGIRGPSG 1195
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 25 GSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
GSP + GP R E G G R SPGP
Sbjct: 1018 GSPGLPGPPGLPGQRGEEGPPGMRGSPGP 1046
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 18 GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
G+ P PG P IQGP + GK G R PGP
Sbjct: 1198 GSPGP-PGPPGIQGPAGLDGLDGKDGKPGLRGDPGP 1232
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQG----QGQRRLPVGASFQGWRGRQNG 78
+PG P +QGP G G + PGP +G QG+ P QG G +
Sbjct: 763 QPGLPGVQGP---------PGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGP 813
Query: 79 GLPRSEQ 85
P E+
Sbjct: 814 PGPTGEK 820
>gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]
Length = 271
Score = 36.6 bits (83), Expect = 0.019
Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 53/177 (29%)
Query: 27 PSIQGPDRPQNPRP--EAGKDGARRSPGPTRQGQGQRRLP-------------------- 64
P+++G P P P E G + R+P P R+G G RRLP
Sbjct: 41 PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSG-RRLPRPDSLIFYRQKRDCKASVNK 99
Query: 65 VGASFQGWRGRQNGGLPRSEQPYRPGRWRE-----GWRSCSGDLPSAWNWFLLC------ 113
A QG R G PR P P GW + D P A LC
Sbjct: 100 ENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGW-AAPQDAPEAAGKRALCPTCSLP 158
Query: 114 -------LSACGCPSALV--------TPQ---APAVPSPGYVPAPSFCHPHQWAASE 152
+ CG ALV +PQ A A P G P P W +S+
Sbjct: 159 LSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSD 215
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 36.2 bits (82), Expect = 0.025
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)
Query: 24 PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
PG P + GP P Q P+ E G+ G + PGP Q Q+R P+ F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255
Query: 70 QGWRGRQNGGLPRSEQPYRP 89
Q +G Q GLP P P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271
Score = 35.4 bits (80), Expect = 0.043
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
PG P GP+ P PR + G DG PGP +G R P F G G G+P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112
Query: 84 EQPYRPGRWREGWRSCSG 101
+ P +G C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126
Score = 28.9 bits (63), Expect = 4.1
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
PG P I+GP P P E G+ G + PG P + G+ GQ +P
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312
Query: 79 GLPRSE-QPYRPGRWREGWRSCSGD 102
GLP P PG R+G + GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335
Score = 28.1 bits (61), Expect = 6.9
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 18 GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
G S P PG P GP P P P E GK G PGP Q GQ P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 66 GASFQGWRGRQ-NGGLP 81
G G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210
Score = 28.1 bits (61), Expect = 6.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 24 PGSP--SIQGPDR---PQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG 78
PGSP +++GP PQ P G G + PGP +G LP +G +G N
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGP----EGPPGLPGNGGIKGEKG--NP 1293
Query: 79 GLP 81
G P
Sbjct: 1294 GQP 1296
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
PG P ++G PQ P+ G G PG P G G R+ G Q G RG
Sbjct: 1387 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1442
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 36.2 bits (82), Expect = 0.025
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)
Query: 24 PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
PG P + GP P Q P+ E G+ G + PGP Q Q+R P+ F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255
Query: 70 QGWRGRQNGGLPRSEQPYRP 89
Q +G Q GLP P P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271
Score = 35.4 bits (80), Expect = 0.043
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
PG P GP+ P PR + G DG PGP +G R P F G G G+P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112
Query: 84 EQPYRPGRWREGWRSCSG 101
+ P +G C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126
Score = 28.9 bits (63), Expect = 4.1
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
PG P I+GP P P E G+ G + PG P + G+ GQ +P
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312
Query: 79 GLPRSE-QPYRPGRWREGWRSCSGD 102
GLP P PG R+G + GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335
Score = 28.1 bits (61), Expect = 6.9
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 18 GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
G S P PG P GP P P P E GK G PGP Q GQ P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 66 GASFQGWRGRQ-NGGLP 81
G G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
PG P ++G PQ P+ G G PG P G G R+ G Q G RG
Sbjct: 1381 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1436
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 36.2 bits (82), Expect = 0.025
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)
Query: 24 PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
PG P + GP P Q P+ E G+ G + PGP Q Q+R P+ F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255
Query: 70 QGWRGRQNGGLPRSEQPYRP 89
Q +G Q GLP P P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271
Score = 35.4 bits (80), Expect = 0.043
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
PG P GP+ P PR + G DG PGP +G R P F G G G+P
Sbjct: 59 PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112
Query: 84 EQPYRPGRWREGWRSCSG 101
+ P +G C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126
Score = 29.6 bits (65), Expect = 2.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 24 PGSP--SIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
PGSP +++GP P+ G+ G + PGP +G LP +G +G N G P
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGFQGLPGP----EGPPGLPGNGGIKGEKG--NPGQP 1293
Score = 28.9 bits (63), Expect = 4.1
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
PG P I+GP P P E G+ G + PG P + G+ GQ +P
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312
Query: 79 GLPRSE-QPYRPGRWREGWRSCSGD 102
GLP P PG R+G + GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335
Score = 28.1 bits (61), Expect = 6.9
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 18 GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
G S P PG P GP P P P E GK G PGP Q GQ P
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 66 GASFQGWRGRQ-NGGLP 81
G G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
PG P ++G PQ P+ G G PG P G G R+ G Q G RG
Sbjct: 1384 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1439
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 35.8 bits (81), Expect = 0.033
Identities = 45/166 (27%), Positives = 58/166 (34%), Gaps = 33/166 (19%)
Query: 18 GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRS-------------PGPTRQGQGQRRLP 64
G + EPGS G RP P +G +RS P P +G G P
Sbjct: 1058 GGTRAEPGSNGAGGQARPDGT-PSSGSSRVQRSGPVDEALAEELEAPRPEEEGSGTALAP 1116
Query: 65 VGA-SFQGWRGRQNGGLPRSEQPYRP----GRWR-EGWRSCSGDLPSAWNWFLLCLSACG 118
VGA + + R R P P P G W+ +G C G+ + L+A
Sbjct: 1117 VGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDGPWGCGGEGAAPRQ----ALAAAE 1172
Query: 119 C-PSALVTPQAPAVPSPGYV--------PAPSFCHPHQWAASEPRP 155
C P A+ P P PG P P P + A P P
Sbjct: 1173 CPPCAMAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETPAPSPSP 1218
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 35.8 bits (81), Expect = 0.033
Identities = 60/235 (25%), Positives = 85/235 (36%), Gaps = 40/235 (17%)
Query: 21 SPEPGSPS---IQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQN 77
+P PG PS G P P A DG SP T + G G GR
Sbjct: 887 APGPGGPSGTSSSGSKASGPPNPPAQGDGTSLSPNYTLESTSGND---GKPVSGGGGRGR 943
Query: 78 GGLPRSEQPYRPGRWREGWRSC--SGDLPS-AWNWFLLCLSACGCPSALVTPQAPAVPSP 134
G R PG + + + + SG P + +A G SA T AP
Sbjct: 944 GRRKRDSGHVSPGTFFDKYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPT---- 999
Query: 135 GYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGA-DATCPADSSSPSKADP 193
PH+ A + P WG +G +L + +G+ D +DSSSP+ +
Sbjct: 1000 ----------PHEKALTSPS--WG-KG--AELLLGDQPDLIGSLDGGAKSDSSSPNVGEF 1044
Query: 194 ALGERGVSEVDWGEAAPSP-----------TPAHSMAHPLPARVLGSAFHGAPRP 237
A E S + E + S +P + + LP R +G+ HG P
Sbjct: 1045 ASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTGSPKLPPRGVGAGEHGPKAP 1099
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 35.8 bits (81), Expect = 0.033
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 24/141 (17%)
Query: 21 SPEPGSPSIQG--PDRPQNPRPEAGKDGA--RRSPGPTRQGQ-----GQRRLPVGASFQG 71
SP+P P+ +G P Q PR G A R SPGPT Q GQR + V +
Sbjct: 1160 SPQPRGPAEEGRAPGEKQRPRASQGPPSAISRHSPGPTPQPDCSLRTGQRSVQVSVTSSC 1219
Query: 72 WRGRQNGGLPRSEQPYRPGRWREGWRSCSGD----------LPSAWNWFLLCLSACGCPS 121
+ + G S G W CS LP ++ + G P
Sbjct: 1220 SQLSSSSGSSSSSVAPAAGTWVLQASQCSLTKACRQPPIVFLPKLVYDMVVSTDSSGLPK 1279
Query: 122 ALVTPQAPAVPSPGYVPAPSF 142
A A +PSP + A SF
Sbjct: 1280 A-----ASLLPSPSVMWASSF 1295
>gi|224994251 myotubularin related protein 11 isoform a [Homo
sapiens]
Length = 709
Score = 35.8 bits (81), Expect = 0.033
Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 27/168 (16%)
Query: 73 RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
RG+Q+G L Q Y PG P A N F L LS Q
Sbjct: 482 RGKQSGQLNSYTQVYTPGY----------SQPPAGNSFNLQLSVWDWDLRYSNAQILQFQ 531
Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCP-ADS------ 185
+PGY P C P W P+P + G + L + + CP DS
Sbjct: 532 NPGY--DPEHC-PDSW-LPRPQPSFMVPGPPSSVWLFSRGALTPLNQLCPWRDSPSLLAV 587
Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHG 233
SS PA+ +++ +WG P+H A PLP +L + G
Sbjct: 588 SSRWLPRPAISSESLADQEWG------LPSHWGACPLPPGLLLPGYLG 629
>gi|89111941 myotubularin related protein 11 isoform b [Homo
sapiens]
Length = 640
Score = 35.8 bits (81), Expect = 0.033
Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 27/168 (16%)
Query: 73 RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
RG+Q+G L Q Y PG P A N F L LS Q
Sbjct: 410 RGKQSGQLNSYTQVYTPGY----------SQPPAGNSFNLQLSVWDWDLRYSNAQILQFQ 459
Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCP-ADS------ 185
+PGY P C P W P+P + G + L + + CP DS
Sbjct: 460 NPGY--DPEHC-PDSW-LPRPQPSFMVPGPPSSVWLFSRGALTPLNQLCPWRDSPSLLAV 515
Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHG 233
SS PA+ +++ +WG P+H A PLP +L + G
Sbjct: 516 SSRWLPRPAISSESLADQEWG------LPSHWGACPLPPGLLLPGYLG 557
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 35.8 bits (81), Expect = 0.033
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQ-NGGLPR 82
PG P + G D + EAG GAR GP +GQ + G +G +G Q GLP
Sbjct: 512 PGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGK--KGSKGNQGQRGLPG 569
Query: 83 SEQP 86
E P
Sbjct: 570 PEGP 573
Score = 33.9 bits (76), Expect = 0.13
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 32/132 (24%)
Query: 25 GSPSIQGPDRP--------QNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGR 75
G P ++GP P Q P+ + G+ G PGP G QG + F G +G
Sbjct: 667 GEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGT 726
Query: 76 QNGGLPRSE-------------------QPYRPGRWREGWRSCSGDLPSAWNWFL-LCLS 115
GLP + +P PG ++G + GDL + L
Sbjct: 727 MGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPG--KQGLQGPKGDLGLTKEEIIKLITE 784
Query: 116 ACGC-PSALVTP 126
CGC P TP
Sbjct: 785 ICGCGPKCKETP 796
Score = 33.1 bits (74), Expect = 0.22
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 25 GSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQ-GQGQRRLPVGASFQGWRGRQNGGLPRS 83
G IQGP P P+ AG+ G S G Q G R PVG QG +G + G +
Sbjct: 455 GEQGIQGPIGPPGPQGPAGQ-GLPGSKGEVGQMGPTGPRGPVGIGVQGPKG-EPGSIGLP 512
Query: 84 EQPYRPGRWREGWRSCSGDLPSA 106
QP PG + LP A
Sbjct: 513 GQPGVPGEDGAAGKKGEAGLPGA 535
>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
Length = 288
Score = 35.4 bits (80), Expect = 0.043
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGW 72
PGSP +G PQ P GK G + PGP + L GA+ GW
Sbjct: 50 PGSPGEKGAPGPQGPPGPPGKMGPKGEPGPR---NCRELLSQGATLSGW 95
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 35.4 bits (80), Expect = 0.043
Identities = 55/175 (31%), Positives = 64/175 (36%), Gaps = 37/175 (21%)
Query: 3 SGSCILVAPAAAWTLGTSSPEPGSPSI--------QGPDRPQNPRPEAGKDGARRSPGPT 54
SG+ + AP + LG + P S I P R PR + DG R PGP
Sbjct: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPA 179
Query: 55 RQ--GQGQRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRW--------REGWRSCSGDLP 104
R R P G+ +G G G PR P RPG R R SG P
Sbjct: 180 RTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDP-RPGEGFTARFLQPRGCGREFSGPFP 238
Query: 105 S--------AWNWFLLCLSACGCPSALVTPQ--------APA-VPSPGYVPAPSF 142
S +L L G AL TP AP+ PSP PAPSF
Sbjct: 239 SRPGPRTPVPTAPYLAVLPERG-GRALTTPALARTPGSLAPSPPPSPNPRPAPSF 292
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 35.4 bits (80), Expect = 0.043
Identities = 55/175 (31%), Positives = 64/175 (36%), Gaps = 37/175 (21%)
Query: 3 SGSCILVAPAAAWTLGTSSPEPGSPSI--------QGPDRPQNPRPEAGKDGARRSPGPT 54
SG+ + AP + LG + P S I P R PR + DG R PGP
Sbjct: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPA 179
Query: 55 RQ--GQGQRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRW--------REGWRSCSGDLP 104
R R P G+ +G G G PR P RPG R R SG P
Sbjct: 180 RTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDP-RPGEGFTARFLQPRGCGREFSGPFP 238
Query: 105 S--------AWNWFLLCLSACGCPSALVTPQ--------APA-VPSPGYVPAPSF 142
S +L L G AL TP AP+ PSP PAPSF
Sbjct: 239 SRPGPRTPVPTAPYLAVLPERG-GRALTTPALARTPGSLAPSPPPSPNPRPAPSF 292
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 35.4 bits (80), Expect = 0.043
Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 20 SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
+S PGSP ++G PR G+ G R PG P G +G R L
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457
Query: 66 GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
+G +G + PR Q ++G R GD + G P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509
Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
P P PG AP EP P G GG L E G PAD
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560
Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
P + P G RGV + GE P P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 35.4 bits (80), Expect = 0.043
Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 20 SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
+S PGSP ++G PR G+ G R PG P G +G R L
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457
Query: 66 GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
+G +G + PR Q ++G R GD + G P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509
Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
P P PG AP EP P G GG L E G PAD
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560
Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
P + P G RGV + GE P P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 35.4 bits (80), Expect = 0.043
Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 20 SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
+S PGSP ++G PR G+ G R PG P G +G R L
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457
Query: 66 GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
+G +G + PR Q ++G R GD + G P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509
Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
P P PG AP EP P G GG L E G PAD
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560
Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
P + P G RGV + GE P P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 35.4 bits (80), Expect = 0.043
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 24 PGSPSIQGPDRPQNPRPEAGK------DGARRSPGPTRQGQGQRRLPVGASFQGWR---G 74
P PS QG ++PQ P P GK G + GP G+ Q P G + R G
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95
Query: 75 RQNGGLPRSEQPYRP 89
+ G P+ +P P
Sbjct: 96 KPQGPPPQGGKPQGP 110
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVG 66
+P P Q + PQ P P AG + + P Q QG R P G
Sbjct: 127 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 170
Score = 28.9 bits (63), Expect = 4.1
Identities = 33/127 (25%), Positives = 41/127 (32%), Gaps = 28/127 (22%)
Query: 22 PEPGSPSIQGPDRP---QNPRPEAGKDGARRSP-----GPTRQGQGQRRLPVGASFQGWR 73
P G QGP P Q P P+ K + RSP GP QG + P +
Sbjct: 61 PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQS 120
Query: 74 GRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVPS 133
R G P+ P + G +G +G P PQAP
Sbjct: 121 ARSPPGKPQG-PPQQEGNNPQGPPPPAGGNPQ-------------------QPQAPPAGQ 160
Query: 134 PGYVPAP 140
P P P
Sbjct: 161 PQGPPRP 167
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 35.4 bits (80), Expect = 0.043
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 24 PGSPSIQGPDRPQNPRPEAGK------DGARRSPGPTRQGQGQRRLPVGASFQGWR---G 74
P PS QG ++PQ P P GK G + GP G+ Q P G + R G
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95
Query: 75 RQNGGLPRSEQPYRP 89
+ G P+ +P P
Sbjct: 96 KPQGPPPQGGKPQGP 110
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVG 66
+P P Q + PQ P P AG + + P Q QG R P G
Sbjct: 147 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 190
Score = 28.1 bits (61), Expect = 6.9
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 22 PEPGSPSIQGPDRP---QNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGRQN 77
P G QGP P Q P P+ K + RSP QG Q P G QG G +
Sbjct: 61 PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQG--GNKP 118
Query: 78 GGLPRSEQPYRP 89
G P +P P
Sbjct: 119 QGPPPPGKPQGP 130
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGR----QNG 78
+P P QG ++PQ P P G +R + P G QG + + Q G
Sbjct: 56 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGG 115
Query: 79 GLPRSEQPYRPGR 91
P+ P PG+
Sbjct: 116 NKPQGPPP--PGK 126
Score = 27.7 bits (60), Expect = 9.0
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 23 EPGSPSIQGPDRPQNPRPEAGKDG-----------ARRSPG-PTRQGQGQRRLPVGASFQ 70
+P P QG ++PQ P P G AR PG P Q + P G
Sbjct: 106 KPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP 165
Query: 71 GWRGRQNGGLPRSEQPYRPGRWREGWR 97
Q P + QP P R +G R
Sbjct: 166 AGGNPQQPQAPPAGQPQGPPRPPQGGR 192
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 35.4 bits (80), Expect = 0.043
Identities = 48/178 (26%), Positives = 58/178 (32%), Gaps = 40/178 (22%)
Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG----G 79
PG + G PQ P+ E G +G R G+ +P A G RG + G
Sbjct: 153 PGHNGLDGQPGPQGPKGEKGANGKR----------GKMGIPGAAGNPGERGEKGDHGELG 202
Query: 80 LPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGYVPA 139
L +E P PG+ E GD N LL G P P P P P
Sbjct: 203 LQGNEGP--PGQKGE-----KGDKGDVSNDVLL----AGAKGDQGPPGPPGPPGPPGPPG 251
Query: 140 PSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSPSKADPALGE 197
P P A PR + G C G P D + KAD E
Sbjct: 252 P----PGSRRAKGPRQPSMFNGQCP-----------GETCAIPNDDTLVGKADEKASE 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,167,244
Number of Sequences: 37866
Number of extensions: 968190
Number of successful extensions: 8438
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 5702
Number of HSP's gapped (non-prelim): 2566
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.