Search of human proteins with 239756902

Search of human proteins with 239756902

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]           249   3e-67
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ...   249   3e-67
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ...   249   3e-67
gi|40353727 synaptopodin isoform A [Homo sapiens]                      39   0.001
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    37   0.003
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    37   0.003
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    36   0.006
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    36   0.008
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]                36   0.008
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo...    36   0.008
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         36   0.008
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.010
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    35   0.010
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    35   0.010
gi|4758392 forkhead box D1 [Homo sapiens]                              35   0.010
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap...    35   0.013
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    35   0.013
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    35   0.013
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    35   0.013
gi|158303333 synaptopodin isoform B [Homo sapiens]                     35   0.013
gi|31543452 PX domain containing serine/threonine kinase [Homo s...    35   0.013
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]        35   0.013
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]        35   0.013
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]            35   0.018
gi|102469037 jun D proto-oncogene [Homo sapiens]                       34   0.023
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]            34   0.030
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ...    34   0.030
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    34   0.030
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    34   0.030

>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  249 bits (637), Expect = 3e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
           MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60

Query: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
           GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
           sapiens]
          Length = 121

 Score =  249 bits (637), Expect = 3e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
           MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60

Query: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
           GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
           sapiens]
          Length = 121

 Score =  249 bits (637), Expect = 3e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
           MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1   MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60

Query: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
           GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61  GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|40353727 synaptopodin isoform A [Homo sapiens]
          Length = 903

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 49  INRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSP-----APAPRRVESSRLPG 102
           IN   RK  S       GA  PR FS  RA P P PPP P     +P P R  S+ +PG
Sbjct: 762 INAARRKSASP---RSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPG 817



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  LTSHDQKRTEVSGATARTAAYT------ASSPSVGAINRKPRKLFSQ-PGGNGGGARAPR 71
           + S DQ+ +  + AT  T  Y+      A  PSV  +NR  R    Q PGG     R+P 
Sbjct: 202 VVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSV--VNRTARPFGIQAPGGTSQMERSPM 259

Query: 72  TFSRARARPAPAPP----PSPAPAPRRVESSRLP 101
              R     APAP     P  +P P+R   SR P
Sbjct: 260 LERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSP 293


>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform d [Homo sapiens]
          Length = 756

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 25  KRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAP 84
           K + + G++A T+  T SS S       P+  +SQP  N GG      +S+    P P P
Sbjct: 631 KNSNIPGSSANTSTPTVSSYS------PPQPSYSQPPYNQGG------YSQGYTAPPPPP 678

Query: 85  PPSPA 89
           PP PA
Sbjct: 679 PPPPA 683



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 64  GGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRA 111
           G   RAP+     +  P P PPP   P P     +R P    + NK +
Sbjct: 586 GSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNS 633


>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform a [Homo sapiens]
          Length = 856

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 25  KRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAP 84
           K + + G++A T+  T SS S       P+  +SQP  N GG      +S+    P P P
Sbjct: 731 KNSNIPGSSANTSTPTVSSYS------PPQPSYSQPPYNQGG------YSQGYTAPPPPP 778

Query: 85  PPSPA 89
           PP PA
Sbjct: 779 PPPPA 783



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 64  GGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRA 111
           G   RAP+     +  P P PPP   P P     +R P    + NK +
Sbjct: 686 GSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNS 733


>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
          Length = 1894

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 21   SHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPG-GNGGGARAPRTFSRARAR 79
            S+D   TEV     R  A+ A +    A   K +++ S  G G GG  R+ R  + + AR
Sbjct: 1078 SYDDDSTEVEAQDVRAPAHAARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHAASPAR 1137

Query: 80   PA-PAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQA 119
            P+ P  P S A    RV S   PG     +KR       Q+
Sbjct: 1138 PSRPGGPQSRA----RVPSRAAPGKSEPPSKRPLSSKSQQS 1174


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 59  QPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPG-CFGSENKRAAP 113
           +PG   G +R PR  SRA ARP PAP P       R  ++  PG  F    K AAP
Sbjct: 222 EPGRAEGASREPRLRSRA-ARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAP 276



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 59  QPGGNGGGARAPRTFSRARARPAPAPPPSPAPA----PRRVESSRLPGCFGSENKRAAPE 114
           Q G  GG  ++     +  A PAP P P+  PA    P R E +       S   R  P 
Sbjct: 186 QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPA 245

Query: 115 NG 116
            G
Sbjct: 246 PG 247


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 18/85 (21%)

Query: 45  SVGAINRKPRKLFSQPGGNGGGARAPRTFSRA---------------RARPAPAPPPSPA 89
           + GA+ RKP    ++  G  GGA  P +  RA               RA PA    P P 
Sbjct: 49  AAGAVGRKP---LAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPV 105

Query: 90  PAPRRVESSRLPGCFGSENKRAAPE 114
            +P R   +  PG  G +  R + E
Sbjct: 106 SSPGRASGTTRPGPLGQKGLRISAE 130


>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
          Length = 227

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 41 ASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARA------RPAPAPPPSPAPAP 92
          ASSP+     R+ R      GG GGGARAP       A      + AP PP +P P+P
Sbjct: 14 ASSPAERRSKRRRRS--GGDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSP 69


>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
           sapiens]
          Length = 623

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 10  PDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARA 69
           P    + LC +S ++   +   + A  AA   S PS G     PR +  Q      GA +
Sbjct: 34  PCSLGASLCFSSGEESPPQSLASAAEGAA--TSPPSSGG----PRVVERQWEAGSAGAAS 87

Query: 70  PRTFSRARARPAPAPPPSPAPAPR 93
           P   +    R  P  P +P+P PR
Sbjct: 88  PEELASPEERACPEEPAAPSPEPR 111


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 15  SGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTF- 73
           SG   +S D++                 SPS  A +  PRK   +    G   R+P    
Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSA-SPSPRKRQKETSPRGRRRRSPSPPP 554

Query: 74  SRARARPAPAPPP----SPAPAPRRVESSRLPGCFGSENKRAAP 113
           +R R  P+PAPPP    +P P PRR   S  P       +R +P
Sbjct: 555 TRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 24  QKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPA 83
           ++R   S + + +++ ++SS S     + P++  S P       R   + S  R R  P+
Sbjct: 346 RRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT---RRLSPSASPPRRRHRPS 402

Query: 84  PPPSPAPAPR 93
           PP +P P  R
Sbjct: 403 PPATPPPKTR 412



 Score = 27.3 bits (59), Expect = 2.8
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 43  SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAP-APPPSPAPAPRRVESSRLP 101
           SPS+ + +RK     S P  +   AR+P+   R    P P AP  S +P P R  +S  P
Sbjct: 653 SPSLSSKHRKG----SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSP 708



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 69  APRTFSRARARPAPAPPPSPAPAPRRVESSRLP-----GCFGSENKRAAP 113
           +P   +R    P P    SP+P PR  ++S  P     G   S  +R +P
Sbjct: 665 SPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSP 714


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 29  VSGATARTAAYTAS-SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPS 87
           + GAT   +A  A  + S G  +R P    S+P  +G G RAP         PA    P 
Sbjct: 65  IGGATIPESAPRAGPTRSAGTSSRNPA---SRPPASGRGERAP---------PAKNTSPG 112

Query: 88  PAPAPRRVESSRLPGCFGSENKRAAPE 114
           P  +P R   +  PG  G +  R + E
Sbjct: 113 PVSSPGRASGTTRPGPLGQKGLRISAE 139


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 29  VSGATARTAAYTAS-SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPS 87
           + GAT   +A  A  + S G  +R P    S+P  +G G RAP         PA    P 
Sbjct: 65  IGGATIPESAPRAGPTRSAGTSSRNPA---SRPPASGRGERAP---------PAKNTSPG 112

Query: 88  PAPAPRRVESSRLPGCFGSENKRAAPE 114
           P  +P R   +  PG  G +  R + E
Sbjct: 113 PVSSPGRASGTTRPGPLGQKGLRISAE 139


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 29  VSGATARTAAYTASSPSVGAINRKPRKLFS--QPGGNGGGARAPRTFSRARARPAPA--- 83
           ++G+ A   ++ A++P+V  +N  P  L    +P   G   + P  F  A A PAPA   
Sbjct: 198 LNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPS 256

Query: 84  PPPSPAPA 91
           PP +PAPA
Sbjct: 257 PPAAPAPA 264



 Score = 28.9 bits (63), Expect = 0.97
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 36  TAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAP 92
           +A   A  P+  A+   P    + P    G A        ARA P P P P P P P
Sbjct: 133 SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA-----ARAGPGPGPGPGPGPGP 184



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 29  VSGATARTAAYTASSPSVGAINRKPRKL---FSQPGGNGGGARAPRTFSRARARPAPAPP 85
           VSG+ A  A    ++P+ GA    P       ++PGG G     P +  R      PAPP
Sbjct: 63  VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP 122

Query: 86  PSPAPAP 92
            +    P
Sbjct: 123 AAKLRPP 129



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 18/69 (26%)

Query: 69  APRTFSRARARPA------PAPPP------------SPAPAPRRVESSRLPGCFGSENKR 110
           AP T +R    PA      PA PP            +PAPAP     + + G  G     
Sbjct: 276 APATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAA 335

Query: 111 AAPENGLQA 119
           AAP  G++A
Sbjct: 336 AAPAPGVKA 344


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 22/62 (35%), Positives = 29/62 (46%)

Query: 37  AAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVE 96
           +A  A  P   A+ R P  + S  GG+ G A A    ++A A    +P PSP  AP    
Sbjct: 345 SAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPG 404

Query: 97  SS 98
           SS
Sbjct: 405 SS 406


>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
           sapiens]
          Length = 328

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 30/83 (36%), Positives = 32/83 (38%), Gaps = 20/83 (24%)

Query: 59  QPGGNGGGARA-------PRTFSRARARPAPAP-PPSPA------------PAPRRVESS 98
           QPG  GG A A       PRT    R +P PAP PP PA            PAP R + S
Sbjct: 141 QPGREGGRAGAESETAPPPRTNKHRRLQPEPAPRPPPPAASFQPGSALQPPPAPPRRDDS 200

Query: 99  RLPGCFGSENKRAAPENGLQAWR 121
               C      R A    L  WR
Sbjct: 201 ASLRCSVLPPARRAVAAALGKWR 223


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 34   ARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP-RTFSRARARPAPAPPPSPAPAP 92
            AR+    ASSPS G+   +PR L     G+   AR P +  +   A P P  PP+ A  P
Sbjct: 1956 ARSGLEPASSPSKGS---EPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPPASASDP 2012

Query: 93   RRVESSRLP 101
             R ++   P
Sbjct: 2013 HREKTQSKP 2021



 Score = 27.7 bits (60), Expect = 2.2
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 9   DPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPS--------VGAINRKPRKLFSQP 60
           D ++ ASG+  + ++++  E + AT   ++ T S PS         G    KP       
Sbjct: 702 DEEMEASGV--SGNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGAD 759

Query: 61  GGNGGGARAPRTFSRARARPAPAPP----PSPAPAP 92
           G   G    P     A   P PA      P+P PAP
Sbjct: 760 GPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAP 795


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 34   ARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP-RTFSRARARPAPAPPPSPAPAP 92
            AR+    ASSPS G+   +PR L     G+   AR P +  +   A P P  PP+ A  P
Sbjct: 1972 ARSGLEPASSPSKGS---EPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPPASASDP 2028

Query: 93   RRVESSRLP 101
             R ++   P
Sbjct: 2029 HREKTQSKP 2037



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 14  ASGLCLTSHDQKRTEVSG-ATARTAAYTASSPS--------VGAINRKPRKLFSQPGGNG 64
           A  L  + ++  R E SG AT   ++ T S PS         G    KP       G   
Sbjct: 721 AEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGADGPPP 780

Query: 65  GGARAPRTFSRARARPAPAPP----PSPAPAP 92
           G    P     A   P PA      P+P PAP
Sbjct: 781 GPPTPPPEDIPAPTEPTPASEATGAPTPPPAP 812


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
           sapiens]
          Length = 1747

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 60  PGGNGGGAR----APRTFSRARAR-PAP-APPPSPAPAPRRVESSRLPG 102
           PGG GG       APR+  R RAR PAP APP  P   P+R   S +PG
Sbjct: 441 PGGVGGAPLPPPGAPRSCIRIRARFPAPPAPPAPPPRGPKRKLYSAVPG 489



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 71   RTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
            R+ S     P+P+P PSPA  P        PG  G   +R   +  LQ W
Sbjct: 1644 RSVSARSRSPSPSPLPSPASGPG-------PGAPGP--RRPFQQKPLQLW 1684


>gi|158303333 synaptopodin isoform B [Homo sapiens]
          Length = 685

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  LTSHDQKRTEVSGATARTAAYT------ASSPSVGAINRKPRKLFSQ-PGGNGGGARAPR 71
           + S DQ+ +  + AT  T  Y+      A  PSV  +NR  R    Q PGG     R+P 
Sbjct: 202 VVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSV--VNRTARPFGIQAPGGTSQMERSPM 259

Query: 72  TFSRARARPAPAPP----PSPAPAPRRVESSRLP 101
              R     APAP     P  +P P+R   SR P
Sbjct: 260 LERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSP 293


>gi|31543452 PX domain containing serine/threonine kinase [Homo
           sapiens]
          Length = 578

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 19  LTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARA 78
           L     KR+ +  +   +A Y+ S+ S G+    P    S P         P + S   A
Sbjct: 462 LARKKSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSP--------TPPSTSGISA 513

Query: 79  RPAPAPPPSPAPAPRRVESSRLPGCFGSE 107
            P P PPP P  AP    S+  P    S+
Sbjct: 514 LPPPPPPPPPPAAPLPPASTEAPAQLSSQ 542


>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
          Length = 755

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 32  ATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRA----------RARPA 81
           A A  AA TA+SP  G       ++   PG   G    P T + A          ++ P 
Sbjct: 3   AVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQ 62

Query: 82  PAPPPSPAPAPRRVESSRLPGCFGSE 107
              PP P P P   E +R P   G E
Sbjct: 63  ADEPPLPPPPPPPGELARSPEAVGPE 88



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 80  PAPAPPPSPAPAPRRVESSRLP 101
           P+PA PP   PAP   E   LP
Sbjct: 115 PSPASPPEQPPAPEEREEPPLP 136


>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
          Length = 560

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 32  ATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRA----------RARPA 81
           A A  AA TA+SP  G       ++   PG   G    P T + A          ++ P 
Sbjct: 3   AVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQ 62

Query: 82  PAPPPSPAPAPRRVESSRLPGCFGSE 107
              PP P P P   E +R P   G E
Sbjct: 63  ADEPPLPPPPPPPGELARSPEAVGPE 88



 Score = 26.9 bits (58), Expect = 3.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 80  PAPAPPPSPAPAPRRVESSRLP 101
           P+PA PP   PAP   E   LP
Sbjct: 115 PSPASPPEQPPAPEEREEPPLP 136


>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 34.7 bits (78), Expect = 0.018
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 30  SGATARTAAYTASSPSVG---AINRKPRKLFSQPGGNGGGARAPRTFSRARARPAP-APP 85
           SG++    + +A  P++G   A+    R+   + GG  GG     T  RAR  P P  PP
Sbjct: 57  SGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGG-----TALRAREPPPPLLPP 111

Query: 86  PS-PAPAPRRVESSR 99
           PS P P P+   S R
Sbjct: 112 PSPPQPGPKGPASPR 126


>gi|102469037 jun D proto-oncogene [Homo sapiens]
          Length = 347

 Score = 34.3 bits (77), Expect = 0.023
 Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 18/106 (16%)

Query: 8   SDPDVFASGLCLTSHD-QKRTEV-SGATARTAAYTASSPSVGAINRKP------------ 53
           S+   FA G      D  K+ ++ +GA A  AA  A  PS  A    P            
Sbjct: 131 SEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPE 190

Query: 54  ----RKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRV 95
                 L S  GG GG   A      A   P P PPP  A  P R+
Sbjct: 191 APVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRL 236


>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 14  ASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP--- 70
           A G    +  + RT   GA A TAA T          R+      + GG+GGGARA    
Sbjct: 71  AEGAAAAAPRKPRTGRGGAAA-TAAVTRKE-------RETAPARDRGGGDGGGARADGLR 122

Query: 71  ------RTFSRARARPAPAPPPSPAPAP 92
                 R   RA AR  P+ P SP   P
Sbjct: 123 GRSPRRRPAGRAHARSLPSAPGSPKKIP 150


>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
           sapiens]
          Length = 165

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 14  ASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP--- 70
           A G    +  + RT   GA A TAA T          R+      + GG+GGGARA    
Sbjct: 71  AEGAAAAAPRKPRTGRGGAAA-TAAVTRKE-------RETAPARDRGGGDGGGARADGLR 122

Query: 71  ------RTFSRARARPAPAPPPSPAPAP 92
                 R   RA AR  P+ P SP   P
Sbjct: 123 GRSPRRRPAGRAHARSLPSAPGSPKKIP 150


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
            containing 2 [Homo sapiens]
          Length = 1455

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 57   FSQPGGNGGGARAPRTFSRARARPAPAP-PPSPAPA 91
            F+ PGG G GA      + ARA P P P PP  APA
Sbjct: 1389 FAGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPA 1424


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 33.9 bits (76), Expect = 0.030
 Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 11  DVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPG--------G 62
           D+FA G  +     +R    G T +     A SP      R P K  S P         G
Sbjct: 100 DLFAGGFPVLRPAGQRDVAGGKTGQGPGSRAPSP------RLPNKTISGPLIPPASPRLG 153

Query: 63  NG----GGARAPRTFSRARARPAPAPPPSPAPAPRRVESS 98
           N     G AR         A P P PPP P P P  + SS
Sbjct: 154 NTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSS 193


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,193,676
Number of Sequences: 37866
Number of extensions: 395111
Number of successful extensions: 11006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 645
Number of HSP's that attempted gapping in prelim test: 6621
Number of HSP's gapped (non-prelim): 3784
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.