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Search of human proteins with 239755945
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755945 PREDICTED: hypothetical protein [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755945 PREDICTED: hypothetical protein [Homo sapiens] 311 1e-85
gi|239750458 PREDICTED: hypothetical protein [Homo sapiens] 311 1e-85
gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo ... 141 2e-34
gi|150170732 hypothetical protein LOC374470 [Homo sapiens] 35 0.024
gi|150170675 hypothetical protein LOC374470 [Homo sapiens] 35 0.024
gi|211971072 FERM and PDZ domain containing 4 [Homo sapiens] 32 0.16
gi|148746206 MAGE-like protein 2 [Homo sapiens] 32 0.20
gi|169210212 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|169210418 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|169209848 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
gi|239744254 PREDICTED: hypothetical protein [Homo sapiens] 28 2.3
gi|109627656 short long palate, lung and nasal epithelium carcin... 28 2.3
gi|109627654 short long palate, lung and nasal epithelium carcin... 28 2.3
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 28 2.3
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 28 3.9
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ... 27 5.0
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ... 27 5.0
gi|188536004 zinc finger protein 469 [Homo sapiens] 27 5.0
gi|4507137 acidic alpha 1 syntrophin [Homo sapiens] 27 5.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 27 5.0
gi|236459851 ubinuclein 2 [Homo sapiens] 27 6.6
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 27 6.6
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 27 6.6
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 27 6.6
gi|145275193 specifically androgen-regulated protein isoform 2 [... 27 6.6
gi|145275189 specifically androgen-regulated protein isoform 1 [... 27 6.6
>gi|239755945 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 311 bits (797), Expect = 1e-85
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH 60
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH 60
Query: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA
Sbjct: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
Query: 121 RVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
RVVGQEGPYLPRAATMRKKEAATRKATSGLV
Sbjct: 121 RVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
>gi|239750458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 311 bits (797), Expect = 1e-85
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH 60
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEAWEPH 60
Query: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA
Sbjct: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
Query: 121 RVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
RVVGQEGPYLPRAATMRKKEAATRKATSGLV
Sbjct: 121 RVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
>gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
sapiens]
Length = 324
Score = 141 bits (355), Expect = 2e-34
Identities = 77/104 (74%), Positives = 79/104 (75%), Gaps = 4/104 (3%)
Query: 48 SLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELI 107
S T + W P P L PP + RAWGLSQLPANGQQAHDDDSRAELI
Sbjct: 225 SPTAAPLQGWHPCGVP---LIPSGSPPQGRGVR-GRAWGLSQLPANGQQAHDDDSRAELI 280
Query: 108 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV
Sbjct: 281 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 324
Score = 114 bits (284), Expect = 4e-26
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEA 56
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSE+
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSES 56
>gi|150170732 hypothetical protein LOC374470 [Homo sapiens]
Length = 360
Score = 35.0 bits (79), Expect = 0.024
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
RS TPG GP +++ EP R +PA G QAH DD ++ L+ A + GA
Sbjct: 225 RSQTPGALQSTGPSNTELEPEER----MAVPA-GAQAHPDDIQSRLLGA-SGNPVGKGAV 278
Query: 121 RVVGQEGPYLPRAATMRKKEAAT 143
+ + P P R+ +A T
Sbjct: 279 AMAPEMLPKHPHTPRDRRPQADT 301
>gi|150170675 hypothetical protein LOC374470 [Homo sapiens]
Length = 360
Score = 35.0 bits (79), Expect = 0.024
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
RS TPG GP +++ EP R +PA G QAH DD ++ L+ A + GA
Sbjct: 225 RSQTPGALQSTGPSNTELEPEER----MAVPA-GAQAHPDDIQSRLLGA-SGNPVGKGAV 278
Query: 121 RVVGQEGPYLPRAATMRKKEAAT 143
+ + P P R+ +A T
Sbjct: 279 AMAPEMLPKHPHTPRDRRPQADT 301
>gi|211971072 FERM and PDZ domain containing 4 [Homo sapiens]
Length = 1322
Score = 32.3 bits (72), Expect = 0.16
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 76 SQWEPPSRAWGLSQLPANG-QQAHDDDSRAELIH----AFLDDDAINGAARVVGQEGPYL 130
S W PPS WGLSQ+P G + + D R I+ A DD + +++ P
Sbjct: 20 SGWPPPSGTWGLSQVPPYGWEMTANRDGRDYFINHMTQAIPFDDPRLESCQII----PPA 75
Query: 131 PRAATMRK 138
PR MR+
Sbjct: 76 PRKVEMRR 83
>gi|148746206 MAGE-like protein 2 [Homo sapiens]
Length = 646
Score = 32.0 bits (71), Expect = 0.20
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 44 WETRSLTMVVSEAWEPHRSPTPGLASLRGPPHSQ----WEPPSRAWGLS 88
WE +S + VS WE +P GL+ GP S+ WE PS +W LS
Sbjct: 319 WEVQS-PIQVSGDWEHPNTPR-GLSGWEGPSTSRILSGWEGPSASWALS 365
>gi|169210212 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 44 WETRSLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQ 96
W R +VS P R P ASL P W PP++A GL G+Q
Sbjct: 107 WTPRLPPTLVSRLPAPVRCPPAKGASLLHP----WSPPTQASGLGPQAVGGRQ 155
>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 1.7
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 31 VTLTVFRRKTLMFWETRSLTMVVSEAW-----EPHRSPTPGLASLRG----------PPH 75
+TL+ RR ++W + LT +W + R PG A G PP
Sbjct: 440 LTLSALRRVAPLWWRSELLTWPQVVSWRVPSFDDEREVRPGCAHRPGEIEGQLERVAPPA 499
Query: 76 SQWEPPSRAWGLSQLPANGQQAHDD--DSRAELIHAFLDDDAINGAAR-VVGQEGPYLPR 132
+ P S G +G + D R E++ A ++ G AR GQ +
Sbjct: 500 ATVVPDSEGVGAQYRRGDGPEGAGSGRDDRLEVLKADAEESPAAGLARPPTGQYAALVDE 559
Query: 133 AATMRKKEAATRKA 146
++ ++A +A
Sbjct: 560 LLQLQLEDAGAGRA 573
>gi|169210418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 44 WETRSLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQ 96
W R +VS P R P ASL P W PP++A GL G+Q
Sbjct: 107 WTPRLPPTLVSRLPAPVRCPPAKGASLLHP----WSPPTQASGLGPQAVGGRQ 155
>gi|169209848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 44 WETRSLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQ 96
W R +VS P R P ASL P W PP++A GL G+Q
Sbjct: 107 WTPRLPPTLVSRLPAPVRCPPAKGASLLHP----WSPPTQASGLGPQAVGGRQ 155
>gi|239744254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 2.3
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 SPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQA 97
S P LAS +GP +Q PP R G LPA+ Q A
Sbjct: 327 SAGPALAS-QGPLQAQLLPPRRPLGAKSLPASQQPA 361
>gi|109627656 short long palate, lung and nasal epithelium carcinoma
associated 3 isoform 2 [Homo sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 59 PHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAING 118
PH+ P PGLA S L+++ A G H+ +SR + IH D +N
Sbjct: 21 PHKQPWPGLAQAHRDNKST---------LARIIAQGLIKHNAESRIQNIHF---GDRLNA 68
Query: 119 AARV 122
+A+V
Sbjct: 69 SAQV 72
>gi|109627654 short long palate, lung and nasal epithelium carcinoma
associated 3 isoform 1 [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 59 PHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAING 118
PH+ P PGLA S L+++ A G H+ +SR + IH D +N
Sbjct: 21 PHKQPWPGLAQAHRDNKST---------LARIIAQGLIKHNAESRIQNIHF---GDRLNA 68
Query: 119 AARV 122
+A+V
Sbjct: 69 SAQV 72
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 49 LTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIH 108
L +++ A +P +P ++S G W P +W L QLPA + +R L
Sbjct: 126 LFLLLDGAGDPKPTPEAPISSADG---RAWFPSESSWQLPQLPAGSTSGSEPRARPGLGP 182
Query: 109 AFLDDDAINGAA 120
L +GAA
Sbjct: 183 RQLPTGPRDGAA 194
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 27.7 bits (60), Expect = 3.9
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 30 PVTLTVFRRKTLMFWETRSLTMVVSEAWEPHRSP-TPGLASLRGPPHSQWEPPSRAWGLS 88
P + + RR ++ S ++ S A +P P + G R PP S EPP W
Sbjct: 54 PRSSRLSRRSSVDLGLLSSWSLPASPAPDPPDPPDSAGPGPARSPPPSSKEPPEGTW--- 110
Query: 89 QLPANGQQAHDDDSRAELIHAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRK 145
+A +D +R E L D A+ +R E +P A + ++ K
Sbjct: 111 -TEGAPVKAAEDSARPE-----LPDSAVGPGSR----EPLRVPEAVALERRREQEEK 157
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 27.7 bits (60), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 SPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQA 97
S P LAS +GP +Q PP R G LPA+ Q A
Sbjct: 327 SAGPSLAS-QGPLQAQLLPPRRPPGAKSLPASQQPA 361
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 27.7 bits (60), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 SPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQA 97
S P LAS +GP +Q PP R G LPA+ Q A
Sbjct: 327 SAGPSLAS-QGPLQAQLLPPRRPPGAKSLPASQQPA 361
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 27.7 bits (60), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 SPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQA 97
S P LAS +GP +Q PP R G LPA+ Q A
Sbjct: 327 SAGPALAS-QGPLQAQLLPPRRPPGAKSLPASQQPA 361
>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
sapiens]
Length = 765
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 31 VTLTVFRRKTLMFWETRSLTMVVSEAW------EPHRSPTPGLASLRGPPHSQWEPPSRA 84
+TL+ RR ++W + LT +W + G PP + P S
Sbjct: 439 LTLSALRRVAPLWWRSELLTWPQVVSWRVPSFDDEREGEIEGQLERVAPPAATVVPDSEG 498
Query: 85 WGLSQLPANGQQAHDD--DSRAELIHAFLDDDAINGAAR-VVGQEGPYLPRAATMRKKEA 141
G +G + D R E++ A ++ G AR GQ + ++ ++A
Sbjct: 499 VGAQYRRGDGPEGAGSGRDDRLEVLKADAEESPAAGLARPPTGQYAALVDELLQLQLEDA 558
Query: 142 ATRKA 146
+A
Sbjct: 559 GAGRA 563
>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
sapiens]
Length = 765
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 31 VTLTVFRRKTLMFWETRSLTMVVSEAW------EPHRSPTPGLASLRGPPHSQWEPPSRA 84
+TL+ RR ++W + LT +W + G PP + P S
Sbjct: 439 LTLSALRRVAPLWWRSELLTWPQVVSWRVPSFDDEREGEIEGQLERVAPPAATVVPDSEG 498
Query: 85 WGLSQLPANGQQAHDD--DSRAELIHAFLDDDAINGAAR-VVGQEGPYLPRAATMRKKEA 141
G +G + D R E++ A ++ G AR GQ + ++ ++A
Sbjct: 499 VGAQYRRGDGPEGAGSGRDDRLEVLKADAEESPAAGLARPPTGQYAALVDELLQLQLEDA 558
Query: 142 ATRKA 146
+A
Sbjct: 559 GAGRA 563
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 27.3 bits (59), Expect = 5.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 59 PH-RSPTPGLASLRGPP--------HSQWEPPSRAWG 86
PH SPTPG+ SL G P H+ +PP+R G
Sbjct: 1261 PHGSSPTPGVGSLLGGPGGTQAPVSHNSKDPPARQPG 1297
>gi|4507137 acidic alpha 1 syntrophin [Homo sapiens]
Length = 505
Score = 27.3 bits (59), Expect = 5.0
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 61 RSPTPGLASLR-----GPPHSQWEPPSRAWG---LSQLPANGQQAHDDDSRAELIHAFLD 112
R+P GL LR G +W+ + L+ PA+G + + E A L
Sbjct: 6 RAPRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSPADGDPGPEPGAPREQEPAQL- 64
Query: 113 DDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSG 149
NGAA G P LP A ++++ RKA +G
Sbjct: 65 ----NGAAEP-GAGPPQLPEALLLQRRRVTVRKADAG 96
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 27.3 bits (59), Expect = 5.0
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 31 VTLTVFRRKTLMFWETRSL--TMVVSEAWEPHRSP--TPGLASLRGPPHSQWEPPSRAWG 86
V+LT RK+ + + S T++ E+ E T L +G P+ Q PP+ W
Sbjct: 757 VSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDLLETKGDPNLQQAPPNTDWR 816
Query: 87 LSQLP---ANGQQAHDD 100
SQ +G Q DD
Sbjct: 817 FSQAQRPGTSGSQNGDD 833
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 26.9 bits (58), Expect = 6.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 61 RSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAA 120
++PT +AS+ GPP S A S PA DD +L D ++ A
Sbjct: 715 KTPTSLVASVSGPPTSSSTAAIAAASSSSAPAQETICLDDSLDEDLSFHSPSLDLVSEAL 774
Query: 121 RVV--GQEGP 128
V+ G +GP
Sbjct: 775 AVINNGNKGP 784
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 26.9 bits (58), Expect = 6.6
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 61 RSPTPGLASLRGPPHSQWE---PPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAIN 117
RSP P LA+L H QW+ P A PA A + AF + +
Sbjct: 134 RSPLPELAALTACTHVQWDCASPDPAALFSVAAPAL--------PNALQLRAFAEPGGVV 185
Query: 118 GAARVV-GQEGPYL 130
AA VV GQ P+L
Sbjct: 186 RAALVVRGQHAPFL 199
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 26.9 bits (58), Expect = 6.6
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 55 EAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELI--HAFLD 112
E P R PG L GPP + P R G + G +S+A+ I A L
Sbjct: 497 ERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLA 556
Query: 113 DDAINGAARVVGQEGPYLP 131
G + G+ GP P
Sbjct: 557 LRGPAGPMGLTGRPGPVGP 575
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 26.9 bits (58), Expect = 6.6
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 55 EAWEPHRSPTPGLASLRG------PPHSQWEPPSR-------AWGLSQLPANGQQAHDDD 101
++W+ +R P PG R PPH P SR ++ LP + HD
Sbjct: 1180 DSWDGNREPGPGHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGP 1239
Query: 102 SRAE 105
+E
Sbjct: 1240 GTSE 1243
>gi|145275193 specifically androgen-regulated protein isoform 2
[Homo sapiens]
Length = 355
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 60 HRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPA 92
H SP PGLA P + P+ L+Q PA
Sbjct: 137 HLSPAPGLAQPAAPAQASAAIPAAGKALAQAPA 169
>gi|145275189 specifically androgen-regulated protein isoform 1
[Homo sapiens]
Length = 601
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 60 HRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPA 92
H SP PGLA P + P+ L+Q PA
Sbjct: 383 HLSPAPGLAQPAAPAQASAAIPAAGKALAQAPA 415
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,299
Number of Sequences: 37866
Number of extensions: 286420
Number of successful extensions: 1057
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 47
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.