Guide to the Human Genome
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Name: LOC100129907 Sequence: fasta or formatted (204aa) NCBI GI: 169210418
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {204aa} PREDICTED: hypothetical protein
alt mRNA {204aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         21           1
 C cysteine            2.9          6           1
 D aspartate           2.0          4           1
 E glutamate           3.4          7           1
 F phenylalanine       0.0          0           0
 G glycine            12.7         26           2
 H histidine           3.4          7           1
 I isoleucine          1.0          2           1
 K lysine              0.5          1           1
 L leucine            10.3         21           2
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            10.3         21           2
 Q glutamine           8.8         18           2
 R arginine           11.8         24           2
 S serine              6.4         13           1
 T threonine           3.4          7           1
 V valine              7.8         16           1
 W tryptophan          3.4          7           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129907          1.000   PREDICTED: hypothetical protein 
LOC100129907          1.000   PREDICTED: hypothetical protein 
LOC100291900          0.042   PREDICTED: similar to hCG2006635, partial 
LOC100291593          0.037   PREDICTED: similar to hCG2012845 
DMRTA2                0.025   DMRT-like family A2 
LOC100292193          0.025   PREDICTED: hypothetical protein 
LOC100128074          0.025   PREDICTED: hypothetical protein 
TAF4                  0.025   TBP-associated factor 4 
C16orf54              0.025   hypothetical protein LOC283897 
FAM47B                0.022   hypothetical protein LOC170062 
LOC100132234          0.020   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.020   PREDICTED: hypothetical protein LOC100132234 
LOC729570             0.020   PREDICTED: hypothetical protein 
LOC100290381          0.020   PREDICTED: hypothetical protein XP_002346884 
LOC729570             0.020   PREDICTED: hypothetical protein 
LOC100132234          0.020   PREDICTED: hypothetical protein LOC100132234 
LOC100289601          0.020   PREDICTED: hypothetical protein XP_002342725 
LOC729570             0.020   PREDICTED: hypothetical protein 
KLF2                  0.020   Kruppel-like factor 
ALPK3                 0.020   alpha-kinase 3 
MTX1                  0.020   metaxin 1 isoform 1 
MTX1                  0.020   metaxin 1 isoform 2 
LOC100287524          0.020   PREDICTED: hypothetical protein XP_002342307 
C16orf59              0.020   hypothetical protein LOC80178 
TRNP1                 0.017   TMF regulated nuclear protein 
C19orf46              0.017   hypothetical protein LOC163183 
LOC100128398          0.017   PREDICTED: hypothetical protein 
LOC100128398          0.017   PREDICTED: hypothetical protein 
LOC100287994          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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