Guide to the Human Genome
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Name: FRMPD4 Sequence: fasta or formatted (1322aa) NCBI GI: 211971072
Description:

FERM and PDZ domain containing 4

Referenced in:

PDZ Domain
WW Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         97           2
 C cysteine            1.6         21           1
 D aspartate           5.8         77           2
 E glutamate           8.5        112           3
 F phenylalanine       3.2         42           1
 G glycine             6.9         91           2
 H histidine           2.2         29           1
 I isoleucine          4.1         54           2
 K lysine              6.3         83           2
 L leucine             9.5        126           4
 M methionine          2.3         31           1
 N asparagine          3.5         46           1
 P proline             6.4         85           3
 Q glutamine           4.0         53           2
 R arginine            4.2         55           2
 S serine             10.0        132           3
 T threonine           6.1         80           2
 V valine              5.5         73           3
 W tryptophan          0.5          6           1
 Y tyrosine            2.2         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM and PDZ domain containing 4 
FRMPD3                0.186   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.186   PREDICTED: FERM and PDZ domain containing 3 
FRMPD1                0.166   FERM and PDZ domain containing 1 
FRMPD3                0.125   PREDICTED: FERM and PDZ domain containing 3 
PTK2                  0.017   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.017   PTK2 protein tyrosine kinase 2 isoform a 
PTK2B                 0.014   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.014   PTK2B protein tyrosine kinase 2 beta isoform b [Homo...
PTK2B                 0.014   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.014   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
TLN1                  0.012   talin 1 
MAGI3                 0.011   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.011   membrane-associated guanylate kinase-related  3 iso...
TJP3                  0.011   tight junction protein 3 
MUC21                 0.011   mucin 21 
RSF1                  0.010   remodeling and spacing factor 1 
DSPP                  0.010   dentin sialophosphoprotein preproprotein 
LIN7A                 0.010   lin-7 homolog A 
INADL                 0.009   InaD-like 
MAGI2                 0.009   membrane associated guanylate kinase, WW and PDZ dom...
MPDZ                  0.009   multiple PDZ domain protein 
TLN2                  0.008   talin 2 
MYO18A                0.008   myosin 18A isoform b 
MYO18A                0.008   myosin 18A isoform a 
TNS4                  0.008   tensin 4 
WWP2                  0.008   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP1                  0.008   WW domain containing E3 ubiquitin protein ligase 1 [...
NEDD4                 0.007   neural precursor cell expressed, developmentally do...
NEDD4                 0.007   neural precursor cell expressed, developmentally do...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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