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Search of human proteins with 239755941
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755941 PREDICTED: hypothetical protein [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755941 PREDICTED: hypothetical protein [Homo sapiens] 216 3e-57
gi|239750460 PREDICTED: hypothetical protein [Homo sapiens] 204 2e-53
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 39 0.001
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.048
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 32 0.11
gi|4504469 homeobox B5 [Homo sapiens] 31 0.18
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 30 0.31
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 0.31
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 0.31
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 0.31
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 30 0.31
gi|91208420 bassoon protein [Homo sapiens] 30 0.31
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 30 0.31
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 30 0.41
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 30 0.41
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 30 0.41
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 30 0.41
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 30 0.41
gi|58761508 midnolin [Homo sapiens] 30 0.54
gi|167736355 mucin 4 isoform a [Homo sapiens] 29 0.70
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 29 0.91
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 29 0.91
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 29 0.91
gi|14149793 glutamine rich 2 [Homo sapiens] 29 0.91
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c... 28 1.2
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 28 1.2
gi|167466233 myosin light chain kinase family, member 4 [Homo sa... 28 1.2
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 28 1.2
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 28 1.6
gi|83367077 mucin 16 [Homo sapiens] 28 1.6
>gi|239755941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 216 bits (550), Expect = 3e-57
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MRRRAHEDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASN 60
MRRRAHEDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASN
Sbjct: 1 MRRRAHEDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASN 60
Query: 61 PEPSARPRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY 101
PEPSARPRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY
Sbjct: 61 PEPSARPRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY 101
>gi|239750460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 204 bits (518), Expect = 2e-53
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 7 EDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSAR 66
EDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSAR
Sbjct: 105 EDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSAR 164
Query: 67 PRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY 101
PRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY
Sbjct: 165 PRLESEPKACELGHPTSVFTLIRKPDTPGLPLNEY 199
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 15 TTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEPK 74
T+ Q + P D+A P+PGTS + GT T+ TA PEP S+P
Sbjct: 528 TSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQPATPSGGTAQTPEPGT-----SQPM 582
Query: 75 ACELGHPTSVFTLIRKPDTPG 95
+G TS +P TPG
Sbjct: 583 PPSMGTSTS-----HQPATPG 598
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 11 PPILTTPQSSPPKTDSAGY---PRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP 67
PP + T S P T S G P PGTS + + GT T+ G TA PE
Sbjct: 552 PPGVGTSTSHQPATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGT-- 609
Query: 68 RLESEPKACELGHPTSVFTLIRKPDTPG 95
S+P +G TS +P TPG
Sbjct: 610 ---SQPMPPGMGTSTS-----HQPTTPG 629
Score = 32.3 bits (72), Expect = 0.083
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 11 PPILTTPQSSPPKTDSAGY---PRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP 67
PP + T S P T G P GTS + GT T+ G TA PEP
Sbjct: 583 PPSMGTSTSHQPATPGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGTAQTPEPGT-- 640
Query: 68 RLESEPKACELGHPTS 83
S+P P+S
Sbjct: 641 ---SQPMPLSKSTPSS 653
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.048
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 4 RAHEDDFPPILTTPQSSP-PKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPE 62
R E+ P TP++ P P + +G PRPGT + G+Q + + SETA+ P
Sbjct: 3685 RGTENGMKP--ATPKAKPGPSSQGSGSPRPGT----KTGGGSQPQPASGQLQSETATTPA 3738
Query: 63 ----PSARPRLESEP-----KACELG 79
PS P E P K+C G
Sbjct: 3739 KPSFPSRSPAPERLPARAQAKSCTKG 3764
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 11 PPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP--- 67
PP L P+S PPK P PG ++E GT+ R G++TA P A P
Sbjct: 983 PPALPPPES-PPKVQPEPEPEPGLLLEVEE-PGTEEER-----GADTAPTLAPEALPSQG 1035
Query: 68 RLESEPKACELGHPTSVFTLIRKPDTPGLPLNE 100
+E E ++ G P + +P P L E
Sbjct: 1036 EVEREGESPAAGPPPQEL-VEEEPSAPPTLLEE 1067
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 24 TDSAGYPRPGTSCWIQENSGTQTARSKHF--IGSETASNPEPSARPRLESEPKACELGHP 81
T S GY G + +S A S HF +G + + P P+ PR +C L P
Sbjct: 42 TGSYGYNYNGMDLSVNRSS----ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSP 97
Query: 82 TSV 84
S+
Sbjct: 98 ESL 100
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 10 FPPILTTPQS----SPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSA 65
FPP+ P S +PP T +A RP + + TA S G + S PE
Sbjct: 391 FPPVPPPPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGP 450
Query: 66 RPRLESEP 73
P P
Sbjct: 451 APGFPFPP 458
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 12 PILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP---R 68
P TTP++ PP T P T T S S PE SA P
Sbjct: 708 PAPTTPETPPPTTSEVSTP-------------TTTKEPTTIHKSPDESTPELSAEPTPKA 754
Query: 69 LESEPKACELGHPTSVFTLIRKPD 92
LE+ PK E G PT+ KP+
Sbjct: 755 LENSPK--EPGVPTTKTPAATKPE 776
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 12 PILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP---R 68
P TTP++ PP T P T T S S PE SA P
Sbjct: 749 PAPTTPETPPPTTSEVSTP-------------TTTKEPTTIHKSPDESTPELSAEPTPKA 795
Query: 69 LESEPKACELGHPTSVFTLIRKPD 92
LE+ PK E G PT+ KP+
Sbjct: 796 LENSPK--EPGVPTTKTPAATKPE 817
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 12 PILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP---R 68
P TTP++ PP T P T T S S PE SA P
Sbjct: 801 PAPTTPETPPPTTSEVSTP-------------TTTKEPTTIHKSPDESTPELSAEPTPKA 847
Query: 69 LESEPKACELGHPTSVFTLIRKPD 92
LE+ PK E G PT+ KP+
Sbjct: 848 LENSPK--EPGVPTTKTPAATKPE 869
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 18/84 (21%)
Query: 12 PILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARP---R 68
P TTP++ PP T P T T S S PE SA P
Sbjct: 842 PAPTTPETPPPTTSEVSTP-------------TTTKEPTTIHKSPDESTPELSAEPTPKA 888
Query: 69 LESEPKACELGHPTSVFTLIRKPD 92
LE+ PK E G PT+ KP+
Sbjct: 889 LENSPK--EPGVPTTKTPAATKPE 910
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.4 bits (67), Expect = 0.31
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 15 TTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTA---RSKHFIGSE-TASNPEPSARPRLE 70
TT S+P + AG P+PG S +G Q A R++ GS+ TA P+ P+ +
Sbjct: 3806 TTRGSAPAASQPAGKPQPGPS----TATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQ 3861
Query: 71 SEPKACELGHPTSVFTLIRKPDTPGLPLNE 100
P P V R TPG P +
Sbjct: 3862 PAPGP----GPAGVKAGARPGGTPGAPAGQ 3887
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 17 PQSSP--PKTDSAGYPRPG--------TSCWIQENSGTQTARSKHFIGSETASNPEPSAR 66
P S+P PK GYP +S + + + +R H + S EP A+
Sbjct: 3685 PSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHSGPAALQSKAEPQAQ 3744
Query: 67 PRLESEPKA 75
P+L+ A
Sbjct: 3745 PQLQGRQAA 3753
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 30.4 bits (67), Expect = 0.31
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 11 PPILTTPQSSPP-------KTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEP 63
PP LT+P P KT + P PGTS + E + T S H S P
Sbjct: 157 PPGLTSPGLYPAATTAKQGKTGAEAPPLPGTSQYGHERTSQYTGTSPH----PATSPPAG 212
Query: 64 SARPRLESEPKACE 77
S+RP ++ + E
Sbjct: 213 SSRPPMQLNSTSAE 226
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 30.0 bits (66), Expect = 0.41
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 15 TTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEPK 74
TT +S+P + S Y TS TA + HF SETA P P L ++
Sbjct: 598 TTSESTPSLSSSTIYSTVSTST---------TAITSHFTTSETAVTPTPVTPSSLSTDIP 648
Query: 75 ACELG--HPTSVFT---LIRKPDTPGLP 97
L P+SV T L D P +P
Sbjct: 649 TTSLRTLTPSSVGTSTSLTTTTDFPSIP 676
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 2 RRRAHEDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNP 61
R D F +T + S P G PRPG S + + T R + G +S
Sbjct: 2182 RPSTQTDLFVTPVTNQRHSDPYAHPPGTPRPGIS--VPYSQPPATPRPRISEGFTRSSMT 2239
Query: 62 EPSARPRLESEPKACELGHPTSVFTLIRKPDT 93
P P + +A + P L+R PDT
Sbjct: 2240 RPVLMPNQDPFLQAAQNRGPALPGPLVRPPDT 2271
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 11 PPILTTPQSSPPKTDSAGYPRPGTSCW---IQENSGTQTARSKHFIGSETASNPEPSARP 67
PP+LT PP + P P +S TA+S I S T S P PS P
Sbjct: 776 PPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVS-PSPSPIP 834
Query: 68 RLESEPKACELGHPT 82
+E A G PT
Sbjct: 835 PVEPLMSAASPGPPT 849
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 11 PPILTTPQSSPPKTDSAGYPRPGTSCW---IQENSGTQTARSKHFIGSETASNPEPSARP 67
PP+LT PP + P P +S TA+S I S T S P PS P
Sbjct: 977 PPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVS-PSPSPIP 1035
Query: 68 RLESEPKACELGHPT 82
+E A G PT
Sbjct: 1036 PVEPLMSAASPGPPT 1050
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 11 PPILTTPQSSPPKTDSAGYPRPGTSCW---IQENSGTQTARSKHFIGSETASNPEPSARP 67
PP+LT PP + P P +S TA+S I S T S P PS P
Sbjct: 977 PPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVS-PSPSPIP 1035
Query: 68 RLESEPKACELGHPT 82
+E A G PT
Sbjct: 1036 PVEPLMSAASPGPPT 1050
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 11 PPILTTPQSSPPKTDSAGYPRP---GTSCWIQENSGTQTARSKHFIGSETASNPEPSARP 67
PP+ T+P + P +AG R T+C Q + + TA S G+ T S P S P
Sbjct: 202 PPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDC-SPTASSSASPGASTTSTPGASPAP 260
Query: 68 RLESEPKACE--LGHPTSVFT 86
R E + H VF+
Sbjct: 261 RSRKPGAVIESFVNHAPGVFS 281
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 15 TTPQSSPPKTD-SAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEP 73
T +S P TD S+ Y TS + + S + T + + +ET+S A P L ++
Sbjct: 3131 TGDTTSLPVTDTSSAYTGDTTSLPVTDTSSSSTGDTTPLLVTETSSVSTGHATPLLVTDA 3190
Query: 74 KACELGHPT 82
+ GH T
Sbjct: 3191 SSASTGHAT 3199
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 14 LTTPQSSPPKTDSAGYPRPGTSCWI--------QENSGTQTARSKHFIGSETASNPEPSA 65
L PQSS PK DS+ +P+ + + Q G T S S P P+
Sbjct: 254 LWKPQSSEPKRDSSAFPKKASQPPLSDFPKKPPQPELGDLTRTSSEPEVSVLPKRPRPAE 313
Query: 66 RPRLESEPKACELG 79
L +P ELG
Sbjct: 314 FKALSKKPPQPELG 327
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 13 ILTTPQSSPPKTDSAGYPRPGT----SCWIQENSGTQTARSKHFIGSETASNPEPSARPR 68
+ + P PP T P P T S +S + ++ S S ++S+ P A P
Sbjct: 60 LTSAPLPLPPAT-GGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPP 118
Query: 69 LESEPKACEL-GHPTSVFT 86
S P+ EL G P + F+
Sbjct: 119 ASSPPRVLELPGVPAAAFS 137
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 13 ILTTPQSSPPKTDSAGYPRPGT----SCWIQENSGTQTARSKHFIGSETASNPEPSARPR 68
+ + P PP T P P T S +S + ++ S S ++S+ P A P
Sbjct: 60 LTSAPLPLPPAT-GGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPP 118
Query: 69 LESEPKACEL-GHPTSVFT 86
S P+ EL G P + F+
Sbjct: 119 ASSPPRVLELPGVPAAAFS 137
>gi|14149793 glutamine rich 2 [Homo sapiens]
Length = 1663
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 5 AHEDDFPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPS 64
+ E P T Q P D AG PR S Q S + RS+ + T++ P +
Sbjct: 134 SREQSKVPSGTGRQQQPRARDEAGVPRLHQSSTFQFKSDSDRHRSREKL---TSTQPRRN 190
Query: 65 ARPRLESEPKACELGHPTSV 84
ARP + P+SV
Sbjct: 191 ARPGPVQQDLPLARDQPSSV 210
>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 2 [Homo sapiens]
Length = 2277
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 26 SAGYPRPGT---SCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEPKACELGHPT 82
SAG P+ G S W +S RS + + ++ A+P + EP E+G P
Sbjct: 48 SAGIPKVGVLMESVWNMNDSCRFQLRSPESLKNMEKASKTTEAKPESKQEPVKTEMGPPP 107
Query: 83 S 83
S
Sbjct: 108 S 108
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 26 SAGYPRPGT---SCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEPKACELGHPT 82
SAG P+ G S W +S RS + + ++ A+P + EP E+G P
Sbjct: 551 SAGIPKVGVLMESVWNMNDSCRFQLRSPESLKNMEKASKTTEAKPESKQEPVKTEMGPPP 610
Query: 83 S 83
S
Sbjct: 611 S 611
>gi|167466233 myosin light chain kinase family, member 4 [Homo
sapiens]
Length = 388
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 36 CWIQENSGTQTARSKHFIGSETASNPEPSARPRLESE 72
C++++NSG Q +RS H E SN + + R ++S+
Sbjct: 36 CFLEKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSK 72
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5
[Homo sapiens]
Length = 2799
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 26 SAGYPRPGT---SCWIQENSGTQTARSKHFIGSETASNPEPSARPRLESEPKACELGHPT 82
SAG P+ G S W +S RS + + ++ A+P + EP E+G P
Sbjct: 552 SAGIPKVGVLMESVWNMNDSCRFQLRSPESLKNMEKASKTTEAKPESKQEPVKTEMGPPP 611
Query: 83 S 83
S
Sbjct: 612 S 612
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 10 FPPILTTPQSSPPKTDSAGYPRPGTSCWIQENSG---TQTARSKHFIGSETASNPEPSAR 66
+PP+ P PP + P TS + SG T A + S TAS P +
Sbjct: 385 WPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSA 444
Query: 67 PRLESEP 73
P P
Sbjct: 445 PEAGPAP 451
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 10 FPPILTTPQS----SPPKTDSAGYPRPGTSCWIQENSGTQTARSKHFIGSETASNPEPSA 65
FPP+ P S +PP T SA RP + + TA S G + S PE
Sbjct: 391 FPPVPPPPSSGEAVAPPST-SAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGP 449
Query: 66 RPRLESEP 73
P P
Sbjct: 450 APGFPFPP 457
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 5 AHEDDFPPILTTPQSSPPKTDSAGYPRPGT----SCWIQENSGTQTARSKHFIGSETASN 60
+H + P ++T ++ +T +G G + I ++GT +AR++ F+ SET S
Sbjct: 6140 SHSNSPPLTISTHKTIATQTGPSGVTSLGQLTLDTSTIATSAGTPSARTQDFVDSETTSV 6199
Query: 61 PEPSARPRLESEPKACE 77
L++ P + E
Sbjct: 6200 MNNDLNDVLKTSPFSAE 6216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,693,300
Number of Sequences: 37866
Number of extensions: 289729
Number of successful extensions: 1008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 124
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.