Guide to the Human Genome
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Name: LOC100293704 Sequence: fasta or formatted (101aa) NCBI GI: 239755941
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          6           1
 C cysteine            2.0          2           1
 D aspartate           4.0          4           2
 E glutamate           7.9          8           1
 F phenylalanine       3.0          3           1
 G glycine             5.9          6           1
 H histidine           3.0          3           1
 I isoleucine          4.0          4           1
 K lysine              4.0          4           1
 L leucine             5.9          6           1
 M methionine          1.0          1           1
 N asparagine          3.0          3           1
 P proline            14.9         15           2
 Q glutamine           3.0          3           1
 R arginine            7.9          8           3
 S serine             10.9         11           2
 T threonine           9.9         10           2
 V valine              1.0          1           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133747          0.937   PREDICTED: hypothetical protein 
MUPCDH                0.073   mucin and cadherin-like isoform 1 
ZNF469                0.042   zinc finger protein 469 
PELP1                 0.037   proline, glutamic acid and leucine rich protein 1 [...
HOXB5                 0.031   homeobox B5 
SYVN1                 0.026   synoviolin 1 isoform b 
PRG4                  0.026   proteoglycan 4 isoform D 
PRG4                  0.026   proteoglycan 4 isoform C 
PRG4                  0.026   proteoglycan 4 isoform B 
PRG4                  0.026   proteoglycan 4 isoform A 
BSN                   0.026   bassoon protein 
CD300LG               0.026   CD300 molecule-like family member g 
MUC3A                 0.026   PREDICTED: mucin 3A, intestinal 
MLL3                  0.026   myeloid/lymphoid or mixed-lineage leukemia 3 
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
MIDN                  0.026   midnolin 
MUC4                  0.021   mucin 4 isoform a 
PRAM1                 0.021   PML-RARA regulated adaptor molecule 1 
ZBTB4                 0.021   zinc finger and BTB domain containing 4 
ZBTB4                 0.021   zinc finger and BTB domain containing 4 
QRICH2                0.021   glutamine rich 2 
LOC730429             0.016   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.016   PREDICTED: similar to ubiquitin protein ligase E3 c...
MYLK4                 0.016   myosin light chain kinase family, member 4 
UBR5                  0.016   ubiquitin protein ligase E3 component n-recognin 5 [...
SYVN1                 0.016   synoviolin 1 isoform a 
MUC16                 0.016   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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