Guide to the Human Genome
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Name: LOC100292073 Sequence: fasta or formatted (205aa) NCBI GI: 239755904
Description:

PREDICTED: hypothetical protein XP_002344738

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         21           2
 C cysteine            2.0          4           1
 D aspartate           5.9         12           1
 E glutamate           3.9          8           2
 F phenylalanine       2.9          6           2
 G glycine            10.7         22           2
 H histidine           3.4          7           1
 I isoleucine          1.5          3           1
 K lysine              2.0          4           2
 L leucine             9.8         20           2
 M methionine          2.9          6           1
 N asparagine          0.5          1           1
 P proline            12.2         25           3
 Q glutamine           3.9          8           1
 R arginine            3.9          8           1
 S serine             10.7         22           2
 T threonine           3.4          7           1
 V valine              8.8         18           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344738 
FOXK1                 0.045   forkhead box K1 
SPRED3                0.045   sprouty-related, EVH1 domain containing 3 isoform a...
WASL                  0.040   Wiskott-Aldrich syndrome gene-like protein 
KLF2                  0.040   Kruppel-like factor 
RFX1                  0.038   regulatory factor X1 
LOC651856             0.038   PREDICTED: similar to hCG2023245 
WIPF1                 0.038   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.038   WAS/WASL interacting protein family, member 1 
ZNF462                0.035   zinc finger protein 462 
ZIC5                  0.035   zinc finger protein of the cerebellum 5 
RANBP9                0.035   RAN binding protein 9 
GGA3                  0.035   ADP-ribosylation factor binding protein 3 isoform sh...
GGA3                  0.035   ADP-ribosylation factor binding protein 3 isoform lo...
SCAF1                 0.033   SR-related CTD-associated factor 1 
PXK                   0.033   PX domain containing serine/threonine kinase 
ZNF341                0.033   zinc finger protein 341 
WASF2                 0.033   WAS protein family, member 2 
GRIN2D                0.033   N-methyl-D-aspartate receptor subunit 2D precursor ...
ACR                   0.033   acrosin precursor 
LOC100291061          0.030   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.030   PREDICTED: hypothetical protein XP_002343855 
EIF3F                 0.030   eukaryotic translation initiation factor 3, subunit 5...
SF1                   0.030   splicing factor 1 isoform 2 
ARHGAP17              0.030   nadrin isoform 1 
ARHGAP17              0.030   nadrin isoform 2 
BOD1L                 0.030   biorientation of chromosomes in cell division 1-like...
RAPH1                 0.030   Ras association and pleckstrin homology domains 1 is...
ARX                   0.030   aristaless related homeobox 
PCLO                  0.030   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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