Guide to the Human Genome
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Name: LOC100293889 Sequence: fasta or formatted (1149aa) NCBI GI: 239755764
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         60           3
 C cysteine            1.5         17           1
 D aspartate           4.0         46           9
 E glutamate           5.1         59           2
 F phenylalanine       4.5         52           2
 G glycine             4.7         54           2
 H histidine           3.4         39           2
 I isoleucine          5.7         66           2
 K lysine              4.9         56           2
 L leucine            10.4        119           2
 M methionine          2.3         27           2
 N asparagine          3.4         39           1
 P proline             6.8         78           2
 Q glutamine           5.0         57           3
 R arginine            4.1         47           2
 S serine             10.7        123           3
 T threonine           8.0         92           2
 V valine              5.8         67           2
 W tryptophan          1.4         16           1
 Y tyrosine            3.0         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288514          0.997   PREDICTED: hypothetical protein 
LOC100288514          0.997   PREDICTED: hypothetical protein XP_002343198 
DAG1                  0.031   dystroglycan 1 preproprotein 
LOC100134138          0.009   PREDICTED: similar to mucin, partial 
LOC100133408          0.005   PREDICTED: similar to mucin 
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 2...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 1...
SIX5                  0.004   sine oculis homeobox homolog 5 
MAST1                 0.003   microtubule associated serine/threonine kinase 1 [Ho...
LOC100131514          0.003   PREDICTED: similar to hCG1747327, partial 
LOC100133790          0.003   PREDICTED: intestinal mucin-like, partial 
RANBP2                0.003   RAN binding protein 2 
TAF9                  0.003   TAF9 RNA polymerase II, TATA box binding protein-ass...
TAF9                  0.003   TAF9 RNA polymerase II, TATA box binding protein-asso...
CPT1C                 0.003   carnitine palmitoyltransferase 1C isoform 2 
CPT1C                 0.003   carnitine palmitoyltransferase 1C isoform 1 
DMXL2                 0.003   Dmx-like 2 
MUC3B                 0.003   PREDICTED: mucin 3B, cell surface associated, parti...
MUC5B                 0.003   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.003   mucin 5AC 
NPAS2                 0.003   neuronal PAS domain protein 2 
LOC100294420          0.003   PREDICTED: similar to mucin 2 
PDGFRB                0.003   platelet-derived growth factor receptor beta precurso...
LOC100134147          0.003   PREDICTED: hypothetical protein 
C11orf63              0.003   hypothetical protein LOC79864 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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