NPAS2 13945

Name: NPAS2	Sequence: fasta or formatted (824aa)		NCBI GI: 22027471
Description: neuronal PAS domain protein 2		Referenced in: Circadian Rhythms Neurons Helix-Loop-Helix Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 49 2 C cysteine 1.7 14 2 D aspartate 4.1 34 2 E glutamate 5.2 43 2 F phenylalanine 3.6 30 1 G glycine 3.8 31 1 H histidine 3.0 25 1 I isoleucine 3.2 26 2 K lysine 3.6 30 2 L leucine 10.8 89 3 M methionine 2.4 20 2 N asparagine 2.5 21 2 P proline 9.3 77 3 Q glutamine 9.8 81 3 R arginine 4.7 39 2 S serine 12.7 105 3 T threonine 5.6 46 2 V valine 4.6 38 2 W tryptophan 0.7 6 1 Y tyrosine 2.4 20 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 neuronal PAS domain protein 2 CLOCK 0.443 clock ARNTL 0.078 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.078 aryl hydrocarbon receptor nuclear translocator-like ... ARNTL 0.078 aryl hydrocarbon receptor nuclear translocator-like ... ARNT 0.073 aryl hydrocarbon receptor nuclear translocator isofo... ARNT 0.073 aryl hydrocarbon receptor nuclear translocator isofor... EPAS1 0.067 endothelial PAS domain protein 1 ARNTL2 0.064 aryl hydrocarbon receptor nuclear translocator-like ... HIF1A 0.063 hypoxia-inducible factor 1, alpha subunit isoform 2 ... HIF1A 0.063 hypoxia-inducible factor 1, alpha subunit isoform 1 [... ARNT2 0.055 aryl hydrocarbon receptor nuclear translocator 2 [Ho... HIF3A 0.051 hypoxia inducible factor 3, alpha subunit isoform a ... HIF3A 0.051 hypoxia inducible factor 3, alpha subunit isoform c ... PASD1 0.047 PAS domain containing 1 HIF3A 0.042 hypoxia inducible factor 3, alpha subunit isoform b ... SIM1 0.042 single-minded homolog 1 SIM2 0.040 single-minded homolog 2 long isoform SIM2 0.040 single-minded homolog 2 short isoform AHR 0.037 aryl hydrocarbon receptor NPAS3 0.034 neuronal PAS domain protein 3 isoform 1 NCOA1 0.033 nuclear receptor coactivator 1 isoform 2 NCOA1 0.033 nuclear receptor coactivator 1 isoform 3 NCOA1 0.033 nuclear receptor coactivator 1 isoform 1 ARNT 0.032 aryl hydrocarbon receptor nuclear translocator isofo... NCOA2 0.031 nuclear receptor coactivator 2 NPAS3 0.030 neuronal PAS domain protein 3 isoform 2 PER2 0.026 period 2 PER3 0.023 period 3 NCOA3 0.022 nuclear receptor coactivator 3 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.