Guide to the Human Genome
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Name: C11orf63 Sequence: fasta or formatted (778aa) NCBI GI: 40217799
Description:

hypothetical protein LOC79864 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {307aa} hypothetical protein LOC79864 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         33           2
 C cysteine            0.4          3           1
 D aspartate           4.2         33           2
 E glutamate           8.6         67           3
 F phenylalanine       1.7         13           1
 G glycine             4.0         31           2
 H histidine           3.7         29           2
 I isoleucine          3.1         24           1
 K lysine             10.3         80           2
 L leucine             9.1         71           2
 M methionine          1.7         13           1
 N asparagine          5.5         43           2
 P proline             5.9         46           2
 Q glutamine           8.1         63           3
 R arginine            5.0         39           3
 S serine             12.7         99           4
 T threonine           4.8         37           2
 V valine              3.6         28           1
 W tryptophan          0.9          7           1
 Y tyrosine            2.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79864 isoform 1 
C11orf63              0.365   hypothetical protein LOC79864 isoform 2 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.017   retinoblastoma-binding protein 6 isoform 1 
BOD1L                 0.013   biorientation of chromosomes in cell division 1-like...
SMTNL1                0.012   smoothelin-like 1 
SMARCA4               0.012   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.012   SWI/SNF-related matrix-associated actin-dependent re...
CCDC18                0.012   sarcoma antigen NY-SAR-41 
CENPE                 0.011   centromere protein E 
STK10                 0.010   serine/threonine kinase 10 
C1orf62               0.010   hypothetical protein LOC254268 
MAP1A                 0.010   microtubule-associated protein 1A 
CAST                  0.010   calpastatin isoform a 
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
NKTR                  0.010   natural killer-tumor recognition sequence 
HIRIP3                0.009   HIRA interacting protein 3 
CALD1                 0.009   caldesmon 1 isoform 1 
C10orf46              0.009   chromosome 10 open reading frame 46 
DCAF6                 0.009   IQ motif and WD repeats 1 isoform b 
ANKRD11               0.009   ankyrin repeat domain 11 
PPIG                  0.009   peptidylprolyl isomerase G 
TTC16                 0.009   tetratricopeptide repeat domain 16 
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
AFF1                  0.008   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
PPP1R12B              0.008   protein phosphatase 1, regulatory (inhibitor) subunit...
RGAG4                 0.008   retrotransposon gag domain containing 4 
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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