Search of human proteins with 239755208

Search of human proteins with 239755208

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755208 PREDICTED: hypothetical protein [Homo sapiens]
         (307 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755208 PREDICTED: hypothetical protein [Homo sapiens]           641   0.0  
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap...    34   0.14 
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            33   0.32 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          33   0.41 
gi|39930571 leucine rich repeat containing 56 [Homo sapiens]           32   0.71 
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]            32   0.92 
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ...    32   0.92 
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       31   1.6  
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    30   2.1  
gi|223718708 aflatoxin B1 aldehyde reductase 3 isoform 2 [Homo s...    30   2.1  
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   30   2.7  
gi|22218341 matrix metalloproteinase 21 preproprotein [Homo sapi...    30   2.7  
gi|46409306 family with sequence similarity 43, member B [Homo s...    30   3.5  
gi|239754987 PREDICTED: hypothetical protein [Homo sapiens]            30   3.5  
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...    30   3.5  
gi|38570105 Ras-interacting protein 1 [Homo sapiens]                   30   3.5  
gi|18152771 hypothetical protein LOC128653 [Homo sapiens]              30   3.5  
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]            29   4.6  
gi|140161500 ankyrin repeat and sterile alpha motif domain conta...    29   4.6  
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ...    29   6.0  
gi|239757300 PREDICTED: hypothetical protein [Homo sapiens]            29   6.0  
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ...    29   6.0  
gi|239751805 PREDICTED: hypothetical protein XP_002348006 [Homo ...    29   6.0  
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ...    29   6.0  
gi|239746296 PREDICTED: hypothetical protein XP_002343726 [Homo ...    29   6.0  
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap...    29   6.0  
gi|38788260 bromodomain PHD finger transcription factor isoform ...    29   6.0  
gi|38788274 bromodomain PHD finger transcription factor isoform ...    29   6.0  
gi|4758024 coilin [Homo sapiens]                                       29   6.0  
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]            29   6.0  

>gi|239755208 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 307

 Score =  641 bits (1653), Expect = 0.0
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MPKAPSGLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMAS 60
           MPKAPSGLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMAS
Sbjct: 1   MPKAPSGLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMAS 60

Query: 61  GGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVHALS 120
           GGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVHALS
Sbjct: 61  GGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVHALS 120

Query: 121 LHPLNEAEEVLVRHGRAPGQYVRWWAALVIDPGGLAHLVLDEHVEEVVPRLLGLAVASEV 180
           LHPLNEAEEVLVRHGRAPGQYVRWWAALVIDPGGLAHLVLDEHVEEVVPRLLGLAVASEV
Sbjct: 121 LHPLNEAEEVLVRHGRAPGQYVRWWAALVIDPGGLAHLVLDEHVEEVVPRLLGLAVASEV 180

Query: 181 PCIAVGDSQPRQAAHAGPLVVQPAALGAGDEVEEFLGLGRGRHRGLGCGGPEATAQYWRH 240
           PCIAVGDSQPRQAAHAGPLVVQPAALGAGDEVEEFLGLGRGRHRGLGCGGPEATAQYWRH
Sbjct: 181 PCIAVGDSQPRQAAHAGPLVVQPAALGAGDEVEEFLGLGRGRHRGLGCGGPEATAQYWRH 240

Query: 241 QQQRRSIGVTNSNGAALVSPTATAQHWCHQQQRRSIGVTNSNGAVLVSPTATAQYWYQLH 300
           QQQRRSIGVTNSNGAALVSPTATAQHWCHQQQRRSIGVTNSNGAVLVSPTATAQYWYQLH
Sbjct: 241 QQQRRSIGVTNSNGAALVSPTATAQHWCHQQQRRSIGVTNSNGAVLVSPTATAQYWYQLH 300

Query: 301 FADEDPN 307
           FADEDPN
Sbjct: 301 FADEDPN 307


>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
           sapiens]
          Length = 633

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 70  GVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRAPG 109
           G +E G   PG G    ARTR +LL    R  C  L APG
Sbjct: 87  GGEEGGAAKPGAGGACGARTRFSLLAAAERGGCIALAAPG 126


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 31/102 (30%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 3   KAPSGLRQGQK---GGSRGPWG--PARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSA 57
           +APSG   GQ    G  RG W   P R    P+         + W     G  AQ     
Sbjct: 17  RAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQS---- 72

Query: 58  MASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLGLGR 99
               G G     G +  G+GG  GG     R   A L GL R
Sbjct: 73  -GGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTGLAR 113


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 2    PKAPSGL----RQGQKG--GSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVG 48
            P+ P GL     +G KG  G RGP GP   G  P   G  GL  SP     VG
Sbjct: 1387 PRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVG 1439


>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
          Length = 542

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 10  QGQKGGSRGPWGPARDGSTPSHHGQLGLSLSP--WVGEAVGLHAQCLSSAMASGGRGCDC 67
           + Q+ G+  PWGP R      H  +     SP     E  G  +Q L  +     R  D 
Sbjct: 402 ESQQEGAVAPWGPRRVPEEQVHQAEPKTPSSPPSLASEPSGTSSQHLVPSPPKHPRPRDS 461

Query: 68  ETGVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRA 107
            +    W       G R          LG G AA P+LRA
Sbjct: 462 GSSSPRWSTDLQSRGRRLRVLGSWGPGLGDGVAAVPVLRA 501


>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 31.6 bits (70), Expect = 0.92
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 18  GPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMASGGRGCDCETGVQEWGQG 77
           G W P +    PS   Q+ ++LSP +  A+   A   +      G+ C C  GV  WG+G
Sbjct: 84  GIW-PFQPREGPSASTQISVALSPALCPALLTGAVERTPVHLKAGKWCVCWPGVVRWGRG 142

Query: 78  -----GPG 80
                GPG
Sbjct: 143 CLELAGPG 150


>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
           sapiens]
          Length = 235

 Score = 31.6 bits (70), Expect = 0.92
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 18  GPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMASGGRGCDCETGVQEWGQG 77
           G W P +    PS   Q+ ++LSP +  A+   A   +      G+ C C  GV  WG+G
Sbjct: 84  GIW-PFQPREGPSASTQISVALSPALCPALLTGAVERTPVHLKAGKWCVCWPGVVRWGRG 142

Query: 78  -----GPG 80
                GPG
Sbjct: 143 CLELAGPG 150


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 2   PKAPSGLRQGQKGGSRGPWGPARDGSTPSHHGQLG 36
           P+ P GL QGQ+GG+ GP GP  +   P   G +G
Sbjct: 220 PRGPQGL-QGQQGGA-GPTGPPGEPGDPGPMGPIG 252


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 23/72 (31%), Positives = 27/72 (37%)

Query: 11  GQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMASGGRGCDCETG 70
           GQ+       G    G    ++GQ   S+S   G   G   Q  S    SGG G     G
Sbjct: 156 GQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGG 215

Query: 71  VQEWGQGGPGGG 82
               G GG GGG
Sbjct: 216 RGRGGSGGGGGG 227


>gi|223718708 aflatoxin B1 aldehyde reductase 3 isoform 2 [Homo
           sapiens]
          Length = 249

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 8/41 (19%)

Query: 190 PRQAAHAGPLVVQPAALGAGDEVEEFLGLGRGRHRGLGCGG 230
           PR   H G   VQP A GA       LG GRGR  G GC G
Sbjct: 215 PRGRGHPGH--VQPGAAGAE------LGSGRGRAPGAGCRG 247


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 2    PKAPSGLRQGQKGG--SRGPWGPARDGSTPSHHGQLG 36
            P+  +G++ G+KGG  S+GP GP   G    + G+LG
Sbjct: 1586 PRGEAGVK-GEKGGVGSKGPQGPPGPGGEAGNQGRLG 1621


>gi|22218341 matrix metalloproteinase 21 preproprotein [Homo
           sapiens]
          Length = 569

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 170 RLLGLAVASEVPCIAVGDSQP------RQAAHAGPLVVQPAALGAGDEVEEFLGLGRGRH 223
           RLLG A++S+   ++V D +       R  +   PL  +      G  V+  LG GRGRH
Sbjct: 179 RLLGEALSSQ---LSVADQRRIVALAFRMWSEVTPLDFREDLAAPGAAVDIKLGFGRGRH 235

Query: 224 RGLGC-----GGPEATAQYWR 239
             LGC     G  +  A  WR
Sbjct: 236 --LGCPRAFDGSGQEFAHAWR 254


>gi|46409306 family with sequence similarity 43, member B [Homo
           sapiens]
          Length = 329

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 15/55 (27%)

Query: 42  WVGEAVGLHAQCLSSAMASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLG 96
           ++G AV LHA+         G GC  +   + W + GPGGG      T++ L LG
Sbjct: 76  YLGNAVTLHAK---------GDGCTDDAVGKIWARCGPGGG------TKMKLTLG 115


>gi|239754987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 412

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 182 CIAVGDSQPRQ--AAHAGPLVVQPAALGAGDEVEEFLGLGRGRHRGLGCGGPEATAQYWR 239
           C  + +  PR   A H   +   P    AG E+ + L LG GR      G  +     + 
Sbjct: 231 CFPIHEHPPRASWARHLDTVQTPPGVGAAGAEILQLLALGEGR------GPKQLLPSNFS 284

Query: 240 HQQQRRSIGVTNSNGAALVSPTATA 264
             Q  RS G+ NS  A   S   T+
Sbjct: 285 EWQAHRSRGLQNSPHALSASCPPTS 309


>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
           2 [Homo sapiens]
          Length = 530

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 2   PKAPSGLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMASG 61
           P  P G   G  GGS G  GP   G  P  H +L L  +P+   A  + A   + A A+G
Sbjct: 88  PDGPLGAAAGAAGGSWGRPGPPPAG-PPRAHARLDLR-TPYRPPAAAVGA---APAAAAG 142

Query: 62  GRGCDCETGVQEWGQGGPG 80
             G     G    G GG G
Sbjct: 143 MAGVAAPPGNGTRGTGGVG 161


>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
          Length = 963

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 9   RQGQKGGSRGPWGPARDGSTPSHHG 33
           R G  G +R PW PAR G+TP   G
Sbjct: 491 RTGGSGPARPPWLPARPGATPPGPG 515


>gi|18152771 hypothetical protein LOC128653 [Homo sapiens]
          Length = 165

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 76  QGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVHALSLHP 123
           Q G   G  +L    L LL+GLG    PLLRA G    LL  A  LHP
Sbjct: 120 QMGTVSGQLSLQDALLLLLMGLG----PLLRACGMPLTLLGLAFCLHP 163


>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 4   APSGLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMASGGR 63
           +P  L  G        WG    GST    G     L  ++GE +G    C  S +   G 
Sbjct: 30  SPRALSPGSSNKVTLDWG---GGSTTLFSGP---KLGWYLGEFLGTQCVCAISTLGDPGD 83

Query: 64  GCDCETGVQEWGQGGPGGGHRALARTR 90
                 G   WG GG GG   AL R R
Sbjct: 84  SSHSRGG--RWGVGGGGGA--ALWRQR 106


>gi|140161500 ankyrin repeat and sterile alpha motif domain
           containing 1 [Homo sapiens]
          Length = 1134

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 219 GRGRHRGLGCGGPEATAQYWRHQQQRRSIGVTNSNGAALVSPTATAQHWCHQQQR 273
           GR RH  L      + A+ +R Q++ R   +T     +L +P A  Q W HQ ++
Sbjct: 881 GRRRHDSLHDPAAPSRAERFRIQEEHREAKLT-LRPPSLAAPYAPVQSWQHQPEK 934


>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
           sapiens]
          Length = 564

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 198 PLVVQPAALGAGDEVEEFLGLGRGRH-RGLGCGGPEATAQYWRHQQQRRSIG 248
           P    P+    G + +E    GRGR  RGL   G +  A    HQ++R  +G
Sbjct: 297 PCTAAPSPSTGGGQQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVG 348


>gi|239757300 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 54 LSSAMASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLG 96
          +S++ AS G+  + E GV+  G+ G GG   ALA+ R    LG
Sbjct: 33 MSTSWASPGQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLG 75


>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
           sapiens]
          Length = 944

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 198 PLVVQPAALGAGDEVEEFLGLGRGRH-RGLGCGGPEATAQYWRHQQQRRSIG 248
           P    P+    G + +E    GRGR  RGL   G +  A    HQ++R  +G
Sbjct: 297 PCTAAPSPSTGGGQQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVG 348


>gi|239751805 PREDICTED: hypothetical protein XP_002348006 [Homo
          sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 54 LSSAMASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLG 96
          +S++ AS G+  + E GV+  G+ G GG   ALA+ R    LG
Sbjct: 33 MSTSWASPGQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLG 75


>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
           sapiens]
          Length = 522

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 198 PLVVQPAALGAGDEVEEFLGLGRGRH-RGLGCGGPEATAQYWRHQQQRRSIG 248
           P    P+    G + +E    GRGR  RGL   G +  A    HQ++R  +G
Sbjct: 217 PCTAAPSPSTGGGQQDELGRCGRGRRCRGLHAAGDQLEALGSLHQEERLRVG 268


>gi|239746296 PREDICTED: hypothetical protein XP_002343726 [Homo
          sapiens]
          Length = 128

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 54 LSSAMASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLG 96
          +S++ AS G+  + E GV+  G+ G GG   ALA+ R    LG
Sbjct: 33 MSTSWASPGQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLG 75


>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
           sapiens]
          Length = 328

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 15  GSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLHAQCLSSAMA--SGGRGCDCETGVQ 72
           G   P  PA  G+TPS   Q G    P+    V     CLS+A+   +GGRG        
Sbjct: 54  GEGPPHTPAL-GATPSPDPQQGSPERPFKVPGVFSTLPCLSTALTFRAGGRG-------- 104

Query: 73  EWGQGGPGGGHRAL 86
             G G  GGG R L
Sbjct: 105 -RGGGEGGGGERLL 117


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
           [Homo sapiens]
          Length = 2903

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 7   GLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLH------AQCLSSAMAS 60
           GLR   +G SRG W  A+    P    +  LS SP  G +          A   +SA   
Sbjct: 38  GLRSRHRGSSRGRWAAAQAEVAP----KTRLS-SPRGGSSSRRKPPPPPPAPPSTSAPGR 92

Query: 61  GGRGCDCETGVQEWGQGGPGGGHRALARTRLA 92
           GGRG     G      GG GGGH  LART  A
Sbjct: 93  GGRG-----GGGGRTGGGGGGGH--LARTTAA 117


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
           [Homo sapiens]
          Length = 2920

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 7   GLRQGQKGGSRGPWGPARDGSTPSHHGQLGLSLSPWVGEAVGLH------AQCLSSAMAS 60
           GLR   +G SRG W  A+    P    +  LS SP  G +          A   +SA   
Sbjct: 38  GLRSRHRGSSRGRWAAAQAEVAP----KTRLS-SPRGGSSSRRKPPPPPPAPPSTSAPGR 92

Query: 61  GGRGCDCETGVQEWGQGGPGGGHRALARTRLA 92
           GGRG     G      GG GGGH  LART  A
Sbjct: 93  GGRG-----GGGGRTGGGGGGGH--LARTTAA 117


>gi|4758024 coilin [Homo sapiens]
          Length = 576

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 186 GDSQPRQAAHAGPLVVQPAALGAGDEVEEFL-----GLGRG-RHRGLGCGGPEATA--QY 237
           G +   QA  A P V  PA+LG G   EE L       GRG R RG G G P +    + 
Sbjct: 371 GSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRGHPVSCVVNRS 430

Query: 238 WRHQQQRRSIGVTNSNGAALVSPTAT 263
             +Q+Q++   V  ++   + +P  T
Sbjct: 431 TDNQRQQQLNDVVKNSSTIIQNPVET 456


>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
          Length = 946

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 2   PKAPSGLRQGQ-KGGSRGPWGPARDGSTPSHHGQLGLSLSP 41
           PKAP   R G+ KG SRGP  PA    +PS     GL  +P
Sbjct: 907 PKAPPSSRLGRNKGFSRGPGAPA----SPSASHPQGLDTTP 943


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,431,908
Number of Sequences: 37866
Number of extensions: 761365
Number of successful extensions: 2733
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2704
Number of HSP's gapped (non-prelim): 61
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.