Search of human proteins with 239754496

Search of human proteins with 239754496

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo
sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo ...   210   2e-55
gi|239749056 PREDICTED: hypothetical protein XP_002346901 [Homo ...   210   2e-55
gi|239743084 PREDICTED: hypothetical protein XP_002342735 [Homo ...   210   2e-55
gi|239508733 PREDICTED: hypothetical protein [Homo sapiens]           210   2e-55
gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Ho...    39   7e-04
gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Ho...    39   7e-04
gi|239744207 PREDICTED: chromosome 10 open reading frame 134 [Ho...    39   7e-04
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]     38   0.002
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]     38   0.002
gi|237757310 synaptojanin 1 isoform a [Homo sapiens]                   37   0.003
gi|237757308 synaptojanin 1 isoform b [Homo sapiens]                   37   0.003
gi|41152235 ubiquitin specific protease 51 [Homo sapiens]              37   0.003
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   37   0.004
gi|23308587 N-acetylglutamate synthase [Homo sapiens]                  35   0.010
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|237757312 synaptojanin 1 isoform c [Homo sapiens]                   34   0.022
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ...    34   0.022
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ...    34   0.022
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              34   0.022
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            34   0.029
gi|47132587 protein kinase C, delta binding protein [Homo sapiens]     34   0.029
gi|153792110 HEG homolog 1 [Homo sapiens]                              34   0.029
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]                      34   0.029
gi|148922889 scleraxis homolog B [Homo sapiens]                        33   0.037
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho...    33   0.037
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho...    33   0.037
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ...    33   0.037
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming...    33   0.037

>gi|239754496 PREDICTED: hypothetical protein XP_002346014 [Homo
          sapiens]
          Length = 99

 Score =  210 bits (534), Expect = 2e-55
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60
          MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW
Sbjct: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60

Query: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99
          IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99


>gi|239749056 PREDICTED: hypothetical protein XP_002346901 [Homo
          sapiens]
          Length = 99

 Score =  210 bits (534), Expect = 2e-55
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60
          MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW
Sbjct: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60

Query: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99
          IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99


>gi|239743084 PREDICTED: hypothetical protein XP_002342735 [Homo
          sapiens]
          Length = 99

 Score =  210 bits (534), Expect = 2e-55
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60
          MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW
Sbjct: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60

Query: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99
          IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99


>gi|239508733 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 99

 Score =  210 bits (534), Expect = 2e-55
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60
          MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW
Sbjct: 1  MPLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDW 60

Query: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99
          IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG
Sbjct: 61 IFSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCKMLFIG 99


>gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Homo
           sapiens]
          Length = 626

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 33  PPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGPGTVHLSLLVIK 92
           PPPPPPPP++++G++  +K  + ++P  I   +P   V      +SG      +SL V K
Sbjct: 197 PPPPPPPPTKKKGQKPGRKDTITEKP--IAPAEPVEPV------LSGSMAIGAVSLAVAK 248

Query: 93  -CKML 96
            C ML
Sbjct: 249 ACAML 253


>gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Homo
           sapiens]
          Length = 626

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 33  PPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGPGTVHLSLLVIK 92
           PPPPPPPP++++G++  +K  + ++P  I   +P   V      +SG      +SL V K
Sbjct: 197 PPPPPPPPTKKKGQKPGRKDTITEKP--IAPAEPVEPV------LSGSMAIGAVSLAVAK 248

Query: 93  -CKML 96
            C ML
Sbjct: 249 ACAML 253


>gi|239744207 PREDICTED: chromosome 10 open reading frame 134 [Homo
           sapiens]
          Length = 626

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 33  PPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGPGTVHLSLLVIK 92
           PPPPPPPP++++G++  +K  + ++P  I   +P   V      +SG      +SL V K
Sbjct: 197 PPPPPPPPTKKKGQKPGRKDTITEKP--IAPAEPVEPV------LSGSMAIGAVSLAVAK 248

Query: 93  -CKML 96
            C ML
Sbjct: 249 ACAML 253


>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
          Length = 1812

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  PPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGP 81
           PPPPPPPP  +   +   K A G++ D  F+  P R     PR   G P
Sbjct: 142 PPPPPPPPQPQPSLKRNPKHADGEKEDQ-FNGSPPRPQPRGPRTPPGPP 189


>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
          Length = 1147

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 33  PPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGP 81
           PPPPPPPP  +   +   K A G++ D  F+  P R     PR   G P
Sbjct: 142 PPPPPPPPQPQPSLKRNPKHADGEKEDQ-FNGSPPRPQPRGPRTPPGPP 189


>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
          Length = 1612

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 2    PLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQK--GAVGQRPD 59
            PLP+KD  Q  PL P      + +A     APP  PPPPS  R     +K  G +G  P 
Sbjct: 1132 PLPQKDPAQ--PLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPP- 1188

Query: 60   WIFSPQPQRDVSNDPRKISGGPGT 83
               SP   R     P+     PGT
Sbjct: 1189 ---SPGVARREMEAPK----SPGT 1205


>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
          Length = 1350

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 2    PLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQK--GAVGQRPD 59
            PLP+KD  Q  PL P      + +A     APP  PPPPS  R     +K  G +G  P 
Sbjct: 1132 PLPQKDPAQ--PLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPP- 1188

Query: 60   WIFSPQPQRDVSNDPRKISGGPGT 83
               SP   R     P+     PGT
Sbjct: 1189 ---SPGVARREMEAPK----SPGT 1205


>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
          Length = 711

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 23/73 (31%), Positives = 30/73 (41%)

Query: 2   PLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDWI 61
           P PR      S   P L++     A+     PPPPPP P  R  + + ++   G RP   
Sbjct: 104 PRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQTR 163

Query: 62  FSPQPQRDVSNDP 74
            S     D S DP
Sbjct: 164 RSCSGDLDGSGDP 176


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 2    PLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDWI 61
            PLP+KD  Q  PL P      + +A     APP  PPPPS  R + + Q G  G  P   
Sbjct: 1088 PLPQKDPAQ--PLEPKRPPPPRPVAPPTRPAPPQRPPPPS-GRSQPSPQAGLAGPGPAGY 1144

Query: 62   FSPQP 66
             + +P
Sbjct: 1145 STARP 1149


>gi|23308587 N-acetylglutamate synthase [Homo sapiens]
          Length = 534

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 19 ASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQP 66
          A+ G    ++++ A   P PPP E  G     +  V + P W+ SP+P
Sbjct: 39 AARGTSPGRRLSTAWSQPQPPPEEYAGADDVSQSPVAEEPSWVPSPRP 86


>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 31  AAPPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQP 66
           +APPP PPPP    G    ++   G RP    SP P
Sbjct: 65  SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGP 100


>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 31  AAPPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQP 66
           +APPP PPPP    G    ++   G RP    SP P
Sbjct: 65  SAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGP 100


>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
          Length = 1295

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 2    PLPRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQK 51
            PLP+KD  Q  PL P      + +A     APP  PPPPS  R     +K
Sbjct: 1093 PLPQKDPAQ--PLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRK 1140


>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 513

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 9   PQCSPLLPPLASVGKKMAKKIAAAPPPPP------PPPSERRGKRAEQ-KGAVGQRPDWI 61
           P    L+ P     + +A   A  PPPP       P    RRG+R +    A+G+  DW+
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360

Query: 62  FSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCK 94
              QP   V    RK + G  +     L   C+
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393


>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
           sapiens]
          Length = 513

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 9   PQCSPLLPPLASVGKKMAKKIAAAPPPPP------PPPSERRGKRAEQ-KGAVGQRPDWI 61
           P    L+ P     + +A   A  PPPP       P    RRG+R +    A+G+  DW+
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360

Query: 62  FSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCK 94
              QP   V    RK + G  +     L   C+
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393


>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
           sapiens]
          Length = 513

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 9   PQCSPLLPPLASVGKKMAKKIAAAPPPPP------PPPSERRGKRAEQ-KGAVGQRPDWI 61
           P    L+ P     + +A   A  PPPP       P    RRG+R +    A+G+  DW+
Sbjct: 301 PAPGALIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRPGDWL 360

Query: 62  FSPQPQRDVSNDPRKISGGPGTVHLSLLVIKCK 94
              QP   V    RK + G  +     L   C+
Sbjct: 361 AGLQPAFGVKRSLRKCARGESSAGARPLFPGCR 393


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 2   PLPRKDNPQCSPLLPPLASVGKKMAKKIAAA---PPPP-----------PPPPSERRGKR 47
           P P+K+ P+           G+K A+ + +    PPPP           P P S RRG  
Sbjct: 879 PPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIP 938

Query: 48  AEQKGAVGQRPDWIFSPQPQRDVSNDPRK 76
            E+ GA  +R   I  P P   V   P K
Sbjct: 939 PEEPGAPPRRAGPIKKPPPPTKVEELPPK 967



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 6   KDNPQCSPLLPPLASVGKKMAKKIAAAPPPPP---PPPSERRGKRAEQKGAVGQRPDWIF 62
           K  P   P  P   +    + K++ A P PPP   P P     + A       Q P    
Sbjct: 505 KAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPA-------QAPPAQS 557

Query: 63  SPQPQRDVSNDPRKISGGPGT 83
           +P P   V+  P  +SGG  T
Sbjct: 558 TPTP--GVAAAPTLVSGGGST 576



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 13  PLLPPLASVGKKMAKKIAAAPPPPPPPP 40
           PL  PL     +  K + +  PP PPPP
Sbjct: 805 PLTSPLRQAADEDDKGMRSETPPVPPPP 832



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 13/44 (29%)

Query: 32  APPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPR 75
           AP  PPPPP      +A   GA+G+       P P   ++ DPR
Sbjct: 692 APQAPPPPP------KALYPGALGR-------PPPMPPMNFDPR 722



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 4   PRKDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPP 40
           P +  P  SPL        K M  +    PP PPPPP
Sbjct: 800 PAEPRPLTSPLRQAADEDDKGMRSE---TPPVPPPPP 833


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 6   KDNPQCSPLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGK--------RAEQKGAVGQR 57
           ++ P  SP  P   +  +   K     P PPPPP + RR +        R   +G V + 
Sbjct: 207 RETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPPPCATRREEDMALRTRDRTSSRGTVFRA 266

Query: 58  PDWIFSPQPQ 67
            DW F    Q
Sbjct: 267 ADWGFGRSEQ 276


>gi|47132587 protein kinase C, delta binding protein [Homo sapiens]
          Length = 261

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 27  KKIAAAPPPPP-PPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGPGTVH 85
           +K  AAPPP P  PP    G+ AE +       +    P+P +D   DP    G PG   
Sbjct: 196 RKGPAAPPPTPVKPPRLGPGRSAEAQPEAQPALEPTLEPEPPQDTEEDP----GRPGAAE 251

Query: 86  LSLL 89
            +LL
Sbjct: 252 EALL 255


>gi|153792110 HEG homolog 1 [Homo sapiens]
          Length = 1381

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 15 LPPLASVGKKMAKKIAAAPPPPPPPPSERRGK-------RAEQKGAVGQR 57
          L PLA  G ++  +      PPP PP ERRG        RA + GA  QR
Sbjct: 44 LAPLAGAGLELQLERRPEREPPPTPPRERRGPATPGPSYRAPEPGAATQR 93


>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
          Length = 547

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 6   KDNPQCSPLLPP-LASVGKKMAKKIAAAPPPPPPPP 40
           + +P  SP LP  + +V  +    +A  PPPPPPPP
Sbjct: 394 RHSPWSSPKLPKKVQTVRSRPLSPVATPPPPPPPPP 429



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 13  PLLPPLASVGKKMAKKIAAAPPPPPPPPSERR 44
           P  PP        ++++   PPPPPPP  E++
Sbjct: 422 PPPPPPPPPPPPSSQRLPPPPPPPPPPLPEKK 453


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 30  AAAPPPPPPPPSERRGKRAEQK 51
           A +PPPPPPPP  R G+  + K
Sbjct: 155 AGSPPPPPPPPPARDGENTQPK 176


>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
           sapiens]
          Length = 1065

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 14/61 (22%)

Query: 13  PLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGK------------RAEQKGAVGQRPDW 60
           P +P   S G +  ++I   PPPPPPPP   RG+            R          PDW
Sbjct: 779 PTVPRQNSAGPQ--RRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPDW 836

Query: 61  I 61
           +
Sbjct: 837 V 837


>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
           sapiens]
          Length = 1132

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 14/61 (22%)

Query: 13  PLLPPLASVGKKMAKKIAAAPPPPPPPPSERRGK------------RAEQKGAVGQRPDW 60
           P +P   S G +  ++I   PPPPPPPP   RG+            R          PDW
Sbjct: 875 PTVPRQNSAGPQ--RRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPDW 932

Query: 61  I 61
           +
Sbjct: 933 V 933


>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
          sapiens]
          Length = 1045

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 16 PPLASVGKKMAKKIAAAPPPPPPPPSERRGKRAEQKGAVGQRPDWI 61
          PPL   G  ++++   APPP P     RR +R   +G+   RP ++
Sbjct: 5  PPL---GSPLSREEGEAPPPAPASEGRRRSRRVRLRGSCRHRPSFL 47


>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence-like 1 [Homo sapiens]
          Length = 491

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 32  APPPPPPPPSERRGKRAEQKGAVGQRPDWIFSPQPQRDVSNDPRKISGGPGTV 84
           APPPPPPPP         Q       P  ++S  P   +++ P  I+  PG +
Sbjct: 342 APPPPPPPPISHPMPHPPQAAGT---PHLVYSQAPPPPMTSAPPPITPPPGHI 391



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 9/47 (19%)

Query: 2   PLPRKDNPQCSP--------LLPPLASVGKKMAKKIAAAPPPPPPPP 40
           P P   NP   P        L PP    G  M+  I  AP  PPPPP
Sbjct: 419 PPPHHYNPNSLPQFTEDQGTLSPPFTQPGG-MSPGIWPAPRGPPPPP 464


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,493,813
Number of Sequences: 37866
Number of extensions: 434872
Number of successful extensions: 11533
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 5645
Number of HSP's gapped (non-prelim): 3799
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.