Guide to the Human Genome
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Name: LOC100287584 Sequence: fasta or formatted (99aa) NCBI GI: 239508733
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {99aa} PREDICTED: hypothetical protein XP_002342735
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          7           3
 C cysteine            2.0          2           1
 D aspartate           4.0          4           1
 E glutamate           2.0          2           1
 F phenylalanine       2.0          2           1
 G glycine             8.1          8           2
 H histidine           1.0          1           1
 I isoleucine          5.1          5           1
 K lysine             10.1         10           2
 L leucine             8.1          8           2
 M methionine          3.0          3           1
 N asparagine          2.0          2           1
 P proline            19.2         19           8
 Q glutamine           5.1          5           1
 R arginine            7.1          7           2
 S serine              7.1          7           1
 T threonine           1.0          1           1
 V valine              5.1          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291698          1.000   PREDICTED: hypothetical protein XP_002346014 
LOC100290245          1.000   PREDICTED: hypothetical protein XP_002346901 
LOC100287584          1.000   PREDICTED: hypothetical protein XP_002342735 
C10orf134             0.076   PREDICTED: chromosome 10 open reading frame 134 [Ho...
C10orf134             0.076   PREDICTED: chromosome 10 open reading frame 134 [Ho...
C10orf134             0.076   PREDICTED: chromosome 10 open reading frame 134 [Ho...
KIAA1429              0.070   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.070   hypothetical protein LOC25962 isoform 2 
SYNJ1                 0.065   synaptojanin 1 isoform a 
SYNJ1                 0.065   synaptojanin 1 isoform b 
USP51                 0.065   ubiquitin specific protease 51 
SYNJ1                 0.065   synaptojanin 1 isoform d 
NAGS                  0.054   N-acetylglutamate synthase 
LOC645321             0.054   PREDICTED: hypothetical protein 
LOC645321             0.054   PREDICTED: hypothetical protein 
SYNJ1                 0.049   synaptojanin 1 isoform c 
LOC100293327          0.049   PREDICTED: hypothetical protein 
LOC100291252          0.049   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.049   PREDICTED: hypothetical protein XP_002343484 
BAT2                  0.049   HLA-B associated transcript-2 
LOC100130360          0.049   PREDICTED: hypothetical protein 
PRKCDBP               0.049   protein kinase C, delta binding protein 
HEG1                  0.049   HEG homolog 1 
LMOD2                 0.049   leiomodin 2 (cardiac) 
SCXB                  0.043   scleraxis homolog B 
DAB2IP                0.043   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.043   disabled homolog 2 interacting protein isoform 1 [Ho...
TOPORS                0.043   topoisomerase I binding, arginine/serine-rich 
CBLL1                 0.043   Cas-Br-M (murine) ecotropic retroviral transforming...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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