Guide to the Human Genome
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Name: XIRP2 Sequence: fasta or formatted (938aa) NCBI GI: 119372315
Description:

xin actin-binding repeat containing 2 isoform 2

Referenced in:

LIM Domain Proteins
Muscle

Other entries for this name:
alt prot [3549aa] xin actin-binding repeat containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         45           3
 C cysteine            2.2         21           1
 D aspartate           5.1         48           2
 E glutamate          10.9        102           3
 F phenylalanine       3.5         33           3
 G glycine             4.6         43           2
 H histidine           2.8         26           2
 I isoleucine          3.6         34           2
 K lysine              9.5         89           2
 L leucine             7.1         67           3
 M methionine          2.5         23           2
 N asparagine          6.4         60           5
 P proline             5.2         49           2
 Q glutamine           5.2         49           1
 R arginine            4.7         44           3
 S serine              9.8         92           2
 T threonine           4.5         42           2
 V valine              4.9         46           2
 W tryptophan          0.6          6           1
 Y tyrosine            2.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   xin actin-binding repeat containing 2 isoform 2 [Ho... 
XIRP2                 0.404   xin actin-binding repeat containing 2 isoform 1 [Ho...
LIMA1                 0.105   LIM domain and actin binding 1 isoform a 
LIMA1                 0.104   LIM domain and actin binding 1 isoform b 
LIMA1                 0.099   LIM domain and actin binding 1 isoform c 
LIMD2                 0.061   LIM domain containing 2 
MICAL3                0.023   microtubule associated monoxygenase, calponin and L...
MICAL3                0.021   microtubule associated monoxygenase, calponin and L...
MICAL3                0.021   microtubule associated monoxygenase, calponin and L...
MICAL2                0.018   microtubule associated monoxygenase, calponin and LIM...
CSRP1                 0.015   cysteine and glycine-rich protein 1 isoform 1 
CSRP3                 0.014   cysteine and glycine-rich protein 3 
CSRP3                 0.014   cysteine and glycine-rich protein 3 
MICAL1                0.014   microtubule associated monoxygenase, calponin and L...
MICAL1                0.014   microtubule associated monoxygenase, calponin and L...
CSRP2                 0.014   cysteine and glycine-rich protein 2 
NEBL                  0.014   nebulette non-muscle isoform 
CSRP1                 0.014   cysteine and glycine-rich protein 1 isoform 2 [Homo...
LASP1                 0.013   LIM and SH3 protein 1 
CRIP3                 0.012   cysteine-rich protein 3 
CRIP2                 0.012   cysteine-rich protein 2 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform a 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform c 
FBLIM1                0.012   filamin-binding LIM protein-1 isoform b 
NRAP                  0.011   nebulin-related anchoring protein isoform C 
NRAP                  0.011   nebulin-related anchoring protein isoform S 
CRIP1                 0.010   cysteine-rich protein 1 (intestinal) 
MICALL1               0.009   molecule interacting with Rab13 
PSIP1                 0.009   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.009   PC4 and SFRS1 interacting protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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