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Search of human proteins with 239754303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754303 PREDICTED: hypothetical protein [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754303 PREDICTED: hypothetical protein [Homo sapiens] 390 e-109
gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo ... 390 e-109
gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo ... 390 e-109
gi|16933557 dachsous 1 precursor [Homo sapiens] 39 0.003
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 36 0.022
gi|50511941 EMI domain containing 1 [Homo sapiens] 34 0.082
gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens] 31 0.53
gi|239754648 PREDICTED: hypothetical protein [Homo sapiens] 30 0.91
gi|239743654 PREDICTED: similar to block of proliferation 1 [Hom... 30 1.5
gi|21327667 block of proliferation 1 [Homo sapiens] 30 1.5
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 30 1.5
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 29 2.0
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ... 29 2.0
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 29 2.0
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 29 2.0
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 29 2.6
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 29 2.6
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 28 3.4
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 28 3.4
gi|194018513 patched domain containing 3 [Homo sapiens] 28 3.4
gi|119120915 rhophilin 1 [Homo sapiens] 28 3.4
gi|239757060 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo ... 28 4.5
gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo ... 28 4.5
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens] 28 4.5
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 4.5
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 28 4.5
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 28 5.9
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 28 5.9
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 28 5.9
>gi|239754303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 390 bits (1003), Expect = e-109
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
Query: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
Query: 181 RKGLV 185
RKGLV
Sbjct: 181 RKGLV 185
>gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo
sapiens]
Length = 185
Score = 390 bits (1003), Expect = e-109
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
Query: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
Query: 181 RKGLV 185
RKGLV
Sbjct: 181 RKGLV 185
>gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo
sapiens]
Length = 185
Score = 390 bits (1003), Expect = e-109
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1 MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
Query: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61 KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
Query: 181 RKGLV 185
RKGLV
Sbjct: 181 RKGLV 185
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 38.9 bits (89), Expect = 0.003
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 17 GKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCE 54
G+ +SL AGPGPEG+ + S+G LRA PF E
Sbjct: 2739 GRLRYSLLEAGPGPEGREAFALNSSTGELRARVPFDYE 2776
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 35.8 bits (81), Expect = 0.022
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 6 PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQS-SGSLRATAPFHCEANQGQEKARF 64
P +++L+ P W+ GR G + A++S S +LR + Q Q +A
Sbjct: 72 PPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGP 131
Query: 65 CPRPKPGPLTAGPKSS--SYGEVASVQNTRTQGWY 97
P P P P AGP+ S S G A +G Y
Sbjct: 132 DPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAY 166
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.082
Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 12 LMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQG---QEKARFCPRP 68
L+ PGG A WS+G A ++ S T C G Q + CP P
Sbjct: 14 LLLPGGGAAWSIGAA--------PFSGRRNWCSYVVTRTISCHVQNGTYLQRVLQNCPWP 65
Query: 69 K--PGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFP 126
PG +Y + + R W CC P H +E A S P
Sbjct: 66 MSCPGSSYRTVVRPTYKVMYKIVTARE--WRCC-------PGHSGVSCEEVAASSASLEP 116
Query: 127 MPAALTTQELSSTGYRPRIFSPC 149
M + T + ++ RP FS C
Sbjct: 117 MWSGSTMRRMA---LRPTAFSGC 136
>gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]
Length = 461
Score = 31.2 bits (69), Expect = 0.53
Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 15 PGGKAGWSL-GRAGPGPEGKVSLEATQSSGSLRATAPFHCEA-----NQGQEKARFCPR- 67
PGG G + G A P G + +S G LR C A G+ +AR R
Sbjct: 4 PGGPTGMARPGGARPCSPG-LERAPRRSVGELRLLFEARCAAVAAAAAAGEPRARGAKRR 62
Query: 68 --------PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQEC-P 118
P+ P P+ + E V PT P P R ++C P
Sbjct: 63 GGQVPNGLPRAPPAPVIPQLTVTAEEPDVP------------PTSPGPPER---ERDCLP 107
Query: 119 AGGRSRFPMPAALTTQELSSTG 140
A G S P L+T +SSTG
Sbjct: 108 AAGSSHLQQPRRLSTSSVSSTG 129
>gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 0.91
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 4 VTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKAR 63
V G+ + G A W L G G+ EA L A P H + Q Q
Sbjct: 20 VAVGEEAVFTAAGAAARWPLHTGGAEQFGE---EAVPEGAGLGAQPPPHLQRPQVQTNVL 76
Query: 64 FCPRPKPGPL 73
PR GPL
Sbjct: 77 LSPRRVRGPL 86
>gi|239743654 PREDICTED: similar to block of proliferation 1 [Homo
sapiens]
Length = 668
Score = 29.6 bits (65), Expect = 1.5
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 84 EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG--GRSRFPMPAALTTQELSSTGY 141
+V+ + + GW + P P+P+ WAQE P GR + +PA + Y
Sbjct: 177 KVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESY 236
Query: 142 RPRIFSPCY-LKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
P P Y L E++ L + G+ L + R F + R
Sbjct: 237 NP---PPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLR 273
>gi|21327667 block of proliferation 1 [Homo sapiens]
Length = 746
Score = 29.6 bits (65), Expect = 1.5
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 84 EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG--GRSRFPMPAALTTQELSSTGY 141
+V+ + + GW + P P+P+ WAQE P GR + +PA + Y
Sbjct: 255 KVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESY 314
Query: 142 RPRIFSPCY-LKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
P P Y L E++ L + G+ L + R F + R
Sbjct: 315 NP---PPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLR 351
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 24 GRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPRPKPGPLTAGPKSSSYG 83
G G +SL Q GS R+ R PRP PGP + G SS
Sbjct: 100 GGGGSARSSGISLGYDQRHGSPRS--------------GRSDPRPGPGPPSVGSARSS-- 143
Query: 84 EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPMPA 129
V+S+ + + G Y P P A+ G + FP+PA
Sbjct: 144 -VSSLGSRGSAGAYADFLPPGACPAP----ARSPEPAGPAPFPLPA 184
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 27 GPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEK--------ARFCPRPKPGP 72
GPG G +Q GS +AP + QG +R CP P P P
Sbjct: 677 GPGSTGSSESPGSQGPGSPEGSAPLEPPSQQGCRSLAWGEPAGSRSCPLPAPTP 730
>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
Length = 80
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 68 PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPM 127
P PGP++ GP+++ G G C P P +L WA E RS FP
Sbjct: 19 PVPGPISVGPQAAPPGATGHADGNIPAGPGLCS-PQLLLPGGQLFWAPEVL---RSPFPG 74
Query: 128 P 128
P
Sbjct: 75 P 75
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 2.0
Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 44 SLRATAPFHCEANQGQEKARFCPRPKPGPL--------TAGPKSS------SYGEVASVQ 89
SLR HC++ P P PGPL P S S+ S Q
Sbjct: 567 SLRKHMKIHCKS----------PPPSPGPLGYSSVGTPVGAPLSPVLDPARSHSSTLSPQ 616
Query: 90 NTRTQGWYCCQFPTWPSPTH 109
T WY CQ PS H
Sbjct: 617 VTNLNEWYVCQASGAPSHLH 636
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 29.3 bits (64), Expect = 2.0
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 9 SMILMTPGGKAGWSLGRAGP-GPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPR 67
SM P +A +S+ P GP G L ++ ++ S ATA Q + P
Sbjct: 783 SMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATAL--------QIQPPGSPD 834
Query: 68 PKPGPLTAGPKSSSYGEVASVQNTRTQG 95
P P P P SS+ G VA + G
Sbjct: 835 PPPAPPAPAPASSAPGHVAKLPQKEPVG 862
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 28.9 bits (63), Expect = 2.6
Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 26/105 (24%)
Query: 15 PGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARF---------- 64
PG + R GP PE SL A S SLRA F E + + +F
Sbjct: 33 PGSGSRHGSARPGPTPEPSGSLGAALDS-SLRAAVAFKAEGQRCYREKKFREAIGKYHRA 91
Query: 65 --------------CPRPKPGPLTA-GPKSSSYGEVASVQNTRTQ 94
P P PGP ++ GP S + V++T +
Sbjct: 92 LLQLKAAQGARPSGLPAPAPGPTSSPGPARLSEEQRRLVESTEVE 136
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 28.9 bits (63), Expect = 2.6
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 66 PRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPS---------PTHR-LSWAQ 115
PRPK + ++ +S + GW C WPS P+H+ LS A
Sbjct: 245 PRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHQPLSKAL 304
Query: 116 ECPAGGRSRFPM 127
E P G R P+
Sbjct: 305 ESPLGLRPHLPL 316
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 28.5 bits (62), Expect = 3.4
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 27 GPGPEGKVSLEATQSSGSLRATAPFH--------CEANQGQEKARFCPRPKPGPLTAGPK 78
GPGP + + SGS R T P C E+ P P P P A P
Sbjct: 967 GPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLPPLCSLETIAEEP--APGPGPPPPAAVPT 1024
Query: 79 SSSYG 83
SSS G
Sbjct: 1025 SSSQG 1029
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 66 PRPKPGPLTAGPKSSSYGEVASVQNT--RTQGWYCCQFPTWPSPTHRLSWAQECPA 119
P +PGP + GP+S+++ + N R++GW P PSP S + P+
Sbjct: 1273 PSCRPGPGSQGPESATWKTLGQQLNAELRSRGWGQQDGPGPPSPGQSPSPCRTSPS 1328
>gi|194018513 patched domain containing 3 [Homo sapiens]
Length = 767
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 21 WSLGRAGPGPEGKVSLEATQSSGSLRATAP-FHCEANQGQEKARFCPRPKPGPLTAGPKS 79
W + PGPE K L S AT P ++ E+ + + + + +P PGPL
Sbjct: 3 WVEPKPRPGPEQKPKLTKPDS-----ATGPQWYQESQESESEGK---QPPPGPLAPPKSP 54
Query: 80 SSYGEVASVQN 90
G +AS Q+
Sbjct: 55 EPSGPLASEQD 65
>gi|119120915 rhophilin 1 [Homo sapiens]
Length = 670
Score = 28.5 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 92 RTQGWYCCQFP--TWPSPTHRLSWAQECPAGGRSRFPMPAA 130
R+Q + C+ P TW SP L+W+++ G P P A
Sbjct: 614 RSQREHGCKTPASTWASPRPLLNWSRKAQQGKTGGCPQPCA 654
>gi|239757060 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)
Query: 6 PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
P ++ L+T GG RA PGP V EAT S AP H G+
Sbjct: 64 PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112
Query: 61 --------KARFCPRPKPGP 72
+ FC P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132
>gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo
sapiens]
Length = 168
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)
Query: 6 PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
P ++ L+T GG RA PGP V EAT S AP H G+
Sbjct: 64 PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112
Query: 61 --------KARFCPRPKPGP 72
+ FC P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132
>gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo
sapiens]
Length = 168
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)
Query: 6 PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
P ++ L+T GG RA PGP V EAT S AP H G+
Sbjct: 64 PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112
Query: 61 --------KARFCPRPKPGP 72
+ FC P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132
>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
Length = 6306
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 6 PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFC 65
PG S TPG +G P G ++TQ+ P E Q+ ++
Sbjct: 6175 PGPSTAFFTPG---------SGMPPAGGEISKSTQNLIGAMEEVPPDWERASFQQGSQAS 6225
Query: 66 PRPKPGPLTAG--PKSSSYGEVASVQNTRTQ 94
P KP P P S YG+ + + + +Q
Sbjct: 6226 PDLKPSPQNGATFPSSGGYGQGSLIADEESQ 6256
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 5 TPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARF 64
+P S L++PGG+ GP+G + + Q G + +P A++ +++ F
Sbjct: 657 SPVPSSGLLSPGGR----------GPQGALQSPSAQKRGLSPSPSP----ASKSKKRPLF 702
Query: 65 --------CPRPKPGPLTAGPKSSSYGEVASVQNTRTQG 95
P P PG +G +S ++G Q+ + +G
Sbjct: 703 GSPSPAEKTPHPGPGLRVSGEQSLAWGLGGPSQSQKRKG 741
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 28.1 bits (61), Expect = 4.5
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 35 SLEATQSSGS----LRATAPFHCEANQGQEKARFCPRPKPGPLTAGPKSS--SYGEVASV 88
S ++T S+GS R+ +P + A A P P PGP AGP S +G+ S
Sbjct: 1248 SRKSTPSTGSPSQSSRSGSPSYRPAMGFTTLATGYPSPPPGPAPAGPGDSLDVFGQTPSP 1307
Query: 89 QNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPMPAALTT 133
+ T + P P PT P G+ + PA T+
Sbjct: 1308 RRTGEE----LLRPETPPPT--------LPTSGKLQRDRPAPATS 1340
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 27.7 bits (60), Expect = 5.9
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 106 SPTHRLSWAQ-ECPAGGRSRFPMPAALTTQELSSTGY---------RPRIFSPCYLKEKQ 155
SP L+ Q + P G S P PA + TQ SS PRI+ PC++ + +
Sbjct: 36 SPPGALTTLQHQLPVSGYST-PSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDK 94
Query: 156 FLGFTTCHLGQSSLILILRVFKTQRRKGLV 185
G+ H G S+ F+ +K +V
Sbjct: 95 SSGY---HYGVSACEGCKGFFRRSIQKNMV 121
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 27.7 bits (60), Expect = 5.9
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 106 SPTHRLSWAQ-ECPAGGRSRFPMPAALTTQELSSTGY---------RPRIFSPCYLKEKQ 155
SP L+ Q + P G S P PA + TQ SS PRI+ PC++ + +
Sbjct: 36 SPPGALTTLQHQLPVSGYST-PSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDK 94
Query: 156 FLGFTTCHLGQSSLILILRVFKTQRRKGLV 185
G+ H G S+ F+ +K +V
Sbjct: 95 SSGY---HYGVSACEGCKGFFRRSIQKNMV 121
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 27.7 bits (60), Expect = 5.9
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 14 TPGGKAGWSLGR----AGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPRPK 69
TPG A ++ + A P P+G S + + S S AP A + P P
Sbjct: 874 TPGTPAMYNTDQFSPYAAPSPQG--SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPS 931
Query: 70 PGPLTAGPKSSSYGEVASVQNTRTQGWY 97
P A P S G + G Y
Sbjct: 932 PMAYQASPSPSPVGYSPMTPGAPSPGGY 959
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,808,815
Number of Sequences: 37866
Number of extensions: 461907
Number of successful extensions: 1756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 49
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.