Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC727967 Sequence: fasta or formatted (668aa) NCBI GI: 239743654
Description:

PREDICTED: similar to block of proliferation 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         46           3
 C cysteine            1.8         12           1
 D aspartate           6.7         45           2
 E glutamate           5.1         34           3
 F phenylalanine       3.4         23           2
 G glycine             6.0         40           2
 H histidine           3.1         21           2
 I isoleucine          2.1         14           1
 K lysine              3.4         23           2
 L leucine            10.6         71           3
 M methionine          1.8         12           1
 N asparagine          1.9         13           1
 P proline             9.1         61           3
 Q glutamine           4.2         28           2
 R arginine            9.0         60           3
 S serine              6.9         46           2
 T threonine           3.7         25           1
 V valine              9.4         63           2
 W tryptophan          1.9         13           1
 Y tyrosine            2.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to block of proliferation 1 [Hom... 
BOP1                  0.964   block of proliferation 1 
STRN                  0.024   striatin, calmodulin binding protein 
WDR18                 0.024   WD repeat domain 18 
WDR51A                0.022   WD repeat domain 51A isoform 2 
WDR51A                0.022   WD repeat domain 51A isoform 1 
STRN3                 0.022   nuclear autoantigen isoform 1 
STRN3                 0.022   nuclear autoantigen isoform 2 
WDR51B                0.021   WD repeat domain 51B 
KATNB1                0.021   katanin p80 subunit B 1 
STRN4                 0.021   zinedin isoform 2 
STRN4                 0.021   zinedin isoform 1 
TBL3                  0.020   transducin beta-like 3 
PLRG1                 0.020   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
WDR51A                0.019   WD repeat domain 51A isoform 3 
NLE1                  0.018   Notchless gene homolog isoform a 
WDR5                  0.018   WD repeat domain 5 
WDR5                  0.018   WD repeat domain 5 
PAFAH1B1              0.018   platelet-activating factor acetylhydrolase, isoform I...
COPA                  0.017   coatomer protein complex, subunit alpha isoform 1 [...
COPA                  0.017   coatomer protein complex, subunit alpha isoform 2 [...
THOC6                 0.016   WD repeat domain 58 isoform 2 
THOC6                 0.016   WD repeat domain 58 isoform 1 
WDR5B                 0.016   WD repeat domain 5B 
WDR33                 0.016   WD repeat domain 33 isoform 1 
WDR27                 0.015   WD repeat domain 27 
TEP1                  0.015   telomerase-associated protein 1 
WDR48                 0.015   WD repeat domain 48 
THOC3                 0.015   THO complex 3 
FBXW7                 0.014   F-box and WD repeat domain containing 7 isoform 3 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press