Guide to the Human Genome
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Name: LOC100292651 Sequence: fasta or formatted (211aa) NCBI GI: 239754192
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         18           2
 C cysteine            3.8          8           1
 D aspartate           2.8          6           1
 E glutamate           3.8          8           1
 F phenylalanine       0.9          2           1
 G glycine            12.8         27           2
 H histidine           4.3          9           1
 I isoleucine          1.9          4           1
 K lysine              1.9          4           1
 L leucine            10.0         21           2
 M methionine          1.4          3           1
 N asparagine          0.0          0           0
 P proline            10.0         21           2
 Q glutamine           7.1         15           2
 R arginine            8.1         17           2
 S serine              6.6         14           2
 T threonine           7.1         15           2
 V valine              4.3          9           2
 W tryptophan          3.8          8           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289971          1.000   PREDICTED: hypothetical protein XP_002346780 
LOC100289556          1.000   PREDICTED: hypothetical protein XP_002342628 
ZNF219                0.023   zinc finger protein 219 
ZNF219                0.023   zinc finger protein 219 
ZNF219                0.023   zinc finger protein 219 
CHRD                  0.021   chordin 
LOC100291961          0.021   PREDICTED: hypothetical protein XP_002345135 
VGLL3                 0.016   colon carcinoma related protein 
VASP                  0.014   vasodilator-stimulated phosphoprotein 
CASKIN2               0.012   cask-interacting protein 2 isoform b 
CASKIN2               0.012   cask-interacting protein 2 isoform a 
MYO19                 0.012   myosin head domain containing 1 isoform 1 
LOC100290946          0.012   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.012   PREDICTED: hypothetical protein XP_002344246 
MAP7D1                0.012   MAP7 domain containing 1 
ZNF828                0.009   zinc finger protein 828 
CNKSR1                0.009   connector enhancer of kinase suppressor of Ras 1 [H...
PRIC285               0.009   PPAR-alpha interacting complex protein 285 isoform ...
PRIC285               0.009   PPAR-alpha interacting complex protein 285 isoform ...
FLJ31945              0.007   PREDICTED: hypothetical protein 
LOC100293578          0.007   PREDICTED: hypothetical protein 
LOC100290886          0.007   PREDICTED: hypothetical protein XP_002346949 
LOC100286960          0.007   PREDICTED: hypothetical protein XP_002342813 
LOC100286960          0.007   PREDICTED: hypothetical protein 
KDM6B                 0.007   lysine (K)-specific demethylase 6B 
JOSD1                 0.007   Josephin domain containing 1 
TNK1                  0.007   tyrosine kinase, non-receptor, 1 
SPRED3                0.007   sprouty-related, EVH1 domain containing 3 isoform a...
RAPGEF6               0.007   PDZ domain-containing guanine nucleotide exchange fa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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