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Search of human proteins with 239754098
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754098 PREDICTED: similar to rCG33261 [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754098 PREDICTED: similar to rCG33261 [Homo sapiens] 427 e-120
gi|239748651 PREDICTED: similar to rCG33261 [Homo sapiens] 427 e-120
gi|239742676 PREDICTED: similar to rCG33261 [Homo sapiens] 427 e-120
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 39 0.003
gi|110349719 titin isoform N2-A [Homo sapiens] 35 0.062
gi|31742498 unc-84 homolog B [Homo sapiens] 34 0.081
gi|46559761 PDZ domain containing 4 [Homo sapiens] 33 0.14
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 33 0.18
gi|205360947 microtubule associated monoxygenase, calponin and L... 33 0.24
gi|226530313 microtubule associated monoxygenase, calponin and L... 33 0.24
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H... 32 0.31
gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens] 32 0.40
gi|197333868 T-box 2 [Homo sapiens] 32 0.52
gi|217330634 serine/threonine kinase 36 [Homo sapiens] 32 0.52
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 31 0.89
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 31 0.89
gi|239753371 PREDICTED: hypothetical protein [Homo sapiens] 31 0.89
gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo ... 31 0.89
gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo ... 31 0.89
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso... 31 0.89
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso... 31 0.89
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6... 30 1.2
gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo sapi... 30 1.2
gi|41393608 reticulon 3 isoform b [Homo sapiens] 30 1.5
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 30 1.5
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 30 1.5
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 30 1.5
gi|55956788 nucleolin [Homo sapiens] 30 2.0
gi|55741677 SET domain containing 1A [Homo sapiens] 30 2.0
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 30 2.0
>gi|239754098 PREDICTED: similar to rCG33261 [Homo sapiens]
Length = 213
Score = 427 bits (1099), Expect = e-120
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
Query: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
>gi|239748651 PREDICTED: similar to rCG33261 [Homo sapiens]
Length = 213
Score = 427 bits (1099), Expect = e-120
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
Query: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
>gi|239742676 PREDICTED: similar to rCG33261 [Homo sapiens]
Length = 213
Score = 427 bits (1099), Expect = e-120
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1 MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
Query: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61 SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 27 SPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSG-----PFSPRLGVTGEKSLQEN 81
S + + + GS+ +G+ E+ +++ GG G+G S R S +
Sbjct: 2569 SSSSSSSSSGSETEGE--------EEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSS 2620
Query: 82 RSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYK 141
SS + +S S + SSSS+S S S +SS S S TD +
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680
Query: 142 SFEESFPSP 150
S +E+ P+P
Sbjct: 2681 SDDEAAPAP 2689
Score = 28.9 bits (63), Expect = 3.4
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 9 RKKREGQRLN----LTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSG 64
RKK++G+ L P P++A AP S +K K + G G
Sbjct: 2048 RKKKKGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRSKAKAKGKEVKKENRGKGGA 2107
Query: 65 PFSPRLGVTGEKSLQENRSSEDTQDEKI 92
+ E+ + N+ S ++DE +
Sbjct: 2108 VSKLMESMAAEEDFEPNQDSSFSEDEHL 2135
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 34.7 bits (78), Expect = 0.062
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 65 PFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE--------LVS 116
P P+ V EK L+ E+ K+ R+ V + +V + E ++
Sbjct: 9665 PEEPKRAVPEEKVLKLKPKREEEPPAKVTEFRKRVVKEEKVSIEAPKREPQPIKEVTIME 9724
Query: 117 GLSLHHGMASSLLSYSVTDSYAEY-----KSFEESFPSPELFRKSDYLDWECPNLEEHMQ 171
+ + +S + Y EY K FEE P+ E + +Y + E EEH +
Sbjct: 9725 EKERAYTLEEEAVSVQREEEYEEYEEYDYKEFEEYEPTEEYDQYEEYEEREYERYEEHEE 9784
Query: 172 WKNSTLLDTSKAVAIEKAPQ 191
+ + + K + ++ P+
Sbjct: 9785 Y----ITEPEKPIPVKPVPE 9800
>gi|31742498 unc-84 homolog B [Homo sapiens]
Length = 717
Score = 34.3 bits (77), Expect = 0.081
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 21/130 (16%)
Query: 3 PLRVYTRKKREGQRLNLTPTPDLGSPAKAEA-------------PPGSKRKGKVHGLSKI 49
PLR RK +RL+ P P LG + A PP S + ++HG +
Sbjct: 39 PLRTLKRKSSNMKRLS--PAPQLGPSSDAHTSYYSESLVHESWFPPRSSLE-ELHGDANW 95
Query: 50 AEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSS 109
E R+ G+G S G+ G K+ ++ S S + VD S
Sbjct: 96 GEDLRVRRRRGTGGSESSRASGLVGRKATEDFLGSSSGY-----SSEDDYVGYSDVDQQS 150
Query: 110 SNSELVSGLS 119
S+S L S +S
Sbjct: 151 SSSRLRSAVS 160
>gi|46559761 PDZ domain containing 4 [Homo sapiens]
Length = 769
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 3 PLRVYTRKKREGQRLNLTPT-PDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGS 61
PLR R LN TP P + +PAKA PPGS K LS+ E RQ
Sbjct: 491 PLR---RAMAGNSNLNRTPPGPAVATPAKAAPPPGS--PAKFRSLSRDPEAGR--RQHAE 543
Query: 62 GSGPFSPRLGVTGEK 76
G +P+ G+T E+
Sbjct: 544 ERGRRNPKTGLTLER 558
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 10 KKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPR 69
KK E + PTP+ +PAK E +K K K +++A+K + S P +
Sbjct: 893 KKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEK----TEVAKKEPDDAKAKEPSKPAEKK 948
Query: 70 LGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
+K +E ++ + + K + + L + S +E
Sbjct: 949 EAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAE 992
>gi|205360947 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 1 [Homo sapiens]
Length = 1067
Score = 32.7 bits (73), Expect = 0.24
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 4 LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGS 63
+R+ + +++ LNLTP P++ P K PP S S +A A S G G
Sbjct: 806 IRLSSPERQRLSSLNLTPDPEMEPPPK---PPRS--------CSALARHALESSFVGWGL 854
Query: 64 GPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNS 112
SP+ V EK +E+ S + ++E + L V LQ + +S +
Sbjct: 855 PVQSPQALVAMEKEEKESPFSSEEEEEDV-PLDSDVEQALQTFAKTSGT 902
>gi|226530313 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 2 [Homo sapiens]
Length = 981
Score = 32.7 bits (73), Expect = 0.24
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 4 LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGS 63
+R+ + +++ LNLTP P++ P K PP S S +A A S G G
Sbjct: 720 IRLSSPERQRLSSLNLTPDPEMEPPPK---PPRS--------CSALARHALESSFVGWGL 768
Query: 64 GPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNS 112
SP+ V EK +E+ S + ++E + L V LQ + +S +
Sbjct: 769 PVQSPQALVAMEKEEKESPFSSEEEEEDV-PLDSDVEQALQTFAKTSGT 816
>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
sapiens]
Length = 747
Score = 32.3 bits (72), Expect = 0.31
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 13 EGQRLNLTPTPDLGS-PAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLG 71
E + PD PA+A A G G+ GL K E R SG +P
Sbjct: 115 EAAAMEAAAEPDASEKPAEATAGSGGVNGGEEQGLGKREEDEPEER-----SGDETPGSE 169
Query: 72 VTGEKSLQENRSSEDTQDEKIA 93
V G+K+ +E +D++ K A
Sbjct: 170 VPGDKAAEEQGDDQDSEKSKPA 191
>gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]
Length = 251
Score = 32.0 bits (71), Expect = 0.40
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 4 LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKV----HGLSKI-----AEKAE 54
L + +K + Q L+L TP + +K SKR K+ HG+ + E +
Sbjct: 51 LDLKAKKAQLMQYLSLPKTPKMLKMSKG-LDARSKRWLKIIWRRHGIWPLENIGPTEDVQ 109
Query: 55 RSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSEL 114
S GG S + ++ ++R +ED Q + E++T D+++ + + L
Sbjct: 110 ASAHGGVEENMTSD---IEIPEAKHDHRPTEDVQVSAHGGVEENITSDIEISEAKHDHHL 166
Query: 115 VSGLS------LHHGMASSL---LSYSVTDSYAEYKSFE-----ESFPSPELF--RKSDY 158
V LS L M S L LS S+ D S E +PE+ R DY
Sbjct: 167 VEDLSESLSVCLEDFMTSDLSESLSVSLEDFMTSGLSESLSVSLEDLMTPEMAKERYEDY 226
Query: 159 LDW 161
L W
Sbjct: 227 LCW 229
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 31.6 bits (70), Expect = 0.52
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 10 KKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPR 69
++R G L +P PD SP + P ++ + + E+ + + G G GPF
Sbjct: 369 EERAGAPLGRSPAPDSASPTRLTEPERARER-------RSPERGKEPAESG-GDGPF--- 417
Query: 70 LGVTGEKSLQENRSSEDTQDEKIASLRESVTDDL-----QVDSSS 109
G +SL++ R+ +DE E L Q DS+S
Sbjct: 418 ----GLRSLEKERAEARRKDEGRKEAAEGKEQGLAPLVVQTDSAS 458
>gi|217330634 serine/threonine kinase 36 [Homo sapiens]
Length = 1315
Score = 31.6 bits (70), Expect = 0.52
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 23 PDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQ--- 79
PDLG+P + PP ++ L E+A R G+ S + E+++Q
Sbjct: 267 PDLGTPFTSRLPP------ELQVLKD--EQAHRLAPKGNQSRILTQAYKRMAEEAMQKKH 318
Query: 80 ENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAE 139
+N Q++K + + ++ ++ S L++G+ +AS L S E
Sbjct: 319 QNTGPALEQEDKTSKVAPGTAPLPRLGATPQESSLLAGI-----LASELKSSWAKSGTGE 373
Query: 140 YKS----------FEESFPS--PELF--RKSDYLDWECPNLEEHMQWKNSTLLDTSKAVA 185
S E +FP PE+ R +D +D E + +W++ LL+T++ V
Sbjct: 374 VPSAPRENRTTPDCERAFPEERPEVLGQRSTDVVDLENEEPDSDNEWQH--LLETTEPVP 431
Query: 186 IE-KAP 190
I+ KAP
Sbjct: 432 IQLKAP 437
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 0.89
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 75 EKSLQENRSSEDTQDEKIASLR----ESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLS 130
E +L +S ++Q+E ++ R + T ++ S +SE S +L H + S
Sbjct: 343 EANLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREE 402
Query: 131 YSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNS-TLLDTSKAVAIEKA 189
+ ++S EES SPE S + + Q + S + D S + ++
Sbjct: 403 QADSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRS 462
Query: 190 PQFSNVSAIFSTSSEDYQ 207
+ SN + S+S ED Q
Sbjct: 463 KEDSNSTESKSSSEEDGQ 480
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.89
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 75 EKSLQENRSSEDTQDEKIASLR----ESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLS 130
E +L +S ++Q+E ++ R + T ++ S +SE S +L H + S
Sbjct: 327 EANLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREE 386
Query: 131 YSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNS-TLLDTSKAVAIEKA 189
+ ++S EES SPE S + + Q + S + D S + ++
Sbjct: 387 QADSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRS 446
Query: 190 PQFSNVSAIFSTSSEDYQ 207
+ SN + S+S ED Q
Sbjct: 447 KEDSNSTESKSSSEEDGQ 464
>gi|239753371 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 30.8 bits (68), Expect = 0.89
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
A + APPGS G ++H + A R + G SGPF P
Sbjct: 62 AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102
>gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo
sapiens]
Length = 119
Score = 30.8 bits (68), Expect = 0.89
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
A + APPGS G ++H + A R + G SGPF P
Sbjct: 62 AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102
>gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo
sapiens]
Length = 119
Score = 30.8 bits (68), Expect = 0.89
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
A + APPGS G ++H + A R + G SGPF P
Sbjct: 62 AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102
>gi|45597177 TBC1 domain family, member 9B (with GRAM domain) isoform
b [Homo sapiens]
Length = 1233
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 21 PTPDLGSPAKAE------APPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTG 74
P P+L A E P +K G H L K ++++ +GGSG G SP
Sbjct: 1070 PAPELHQDAARELQPPAAGDPQAKAGGDTH-LGKAPQESQVVVEGGSGEGQGSP------ 1122
Query: 75 EKSLQENRSSEDTQDE-KIASLRESVTDDLQVDSSSSNSELVSG 117
+ S ++T+D+ ++S T LQ + + ++ LV G
Sbjct: 1123 ----SQLLSDDETKDDMSMSSYSVVSTGSLQCEDLADDTVLVGG 1162
>gi|45597175 TBC1 domain family, member 9B (with GRAM domain) isoform
a [Homo sapiens]
Length = 1250
Score = 30.8 bits (68), Expect = 0.89
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 21 PTPDLGSPAKAE------APPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTG 74
P P+L A E P +K G H L K ++++ +GGSG G SP
Sbjct: 1087 PAPELHQDAARELQPPAAGDPQAKAGGDTH-LGKAPQESQVVVEGGSGEGQGSP------ 1139
Query: 75 EKSLQENRSSEDTQDE-KIASLRESVTDDLQVDSSSSNSELVSG 117
+ S ++T+D+ ++S T LQ + + ++ LV G
Sbjct: 1140 ----SQLLSDDETKDDMSMSSYSVVSTGSLQCEDLADDTVLVGG 1179
>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
isoform a [Homo sapiens]
Length = 1047
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 56 SRQGGSGSGPFSP-RLGVTGEKS--LQENRS------SEDTQDEKIASLRESV------- 99
S + G+ SG FSP RL +GE LQEN+ + E+I+ E V
Sbjct: 369 SERPGTSSGTFSPVRLDESGEDEVFLQENKQHLEKTPKPERDRERISEQEEHVKGEDEDI 428
Query: 100 -----TDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYK 141
T+D SS ++ SL++ S YS DSY ++
Sbjct: 429 LGPGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFE 475
>gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo
sapiens]
Length = 344
Score = 30.4 bits (67), Expect = 1.2
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 25/174 (14%)
Query: 25 LGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSS 84
L A A PG +R+ S + +++ + G+G P+ R+G+ E R
Sbjct: 10 LAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQELL----RMV 65
Query: 85 EDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYKSFE 144
+ E+ +L + + DL ++S+S + L S + +++ + S A Y
Sbjct: 66 RQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRN--LVDPITHDLIISLARY---- 119
Query: 145 ESFPSPE---------LFRKSDYLDWECPNLEEHMQWKNSTLLDTSKAVAIEKA 189
P PE L R+ Y +L H QW+ L K A KA
Sbjct: 120 IHCPKPEGDALGAMEKLCRQLTY------HLSPHSQWRRHRGLVKRKPQACLKA 167
>gi|41393608 reticulon 3 isoform b [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 1.5
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 44 HGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASL-RESVTDD 102
H +S + AE S GG GS P LG +S + E ++SL + + +
Sbjct: 11 HSISSSSFGAEPSAPGGGGSPGACPALG---------TKSCSSSCAEGLSSLCSDEPSSE 61
Query: 103 LQVDSSSSNSEL-VSGLSLHHGMASSLL 129
+ S S+SE+ +GL++ HG S +L
Sbjct: 62 IMTSSFLSSSEIHNTGLTILHGEKSHVL 89
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 30.0 bits (66), Expect = 1.5
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 20 TPTPDLGSPAKAEAPPGSKRKGKVHGLSK---IAEKAERSRQGGSGSGPFSPRLGVTGEK 76
TP P+ GSP+ A PP KR G+SK ++ A G GS +P G
Sbjct: 477 TPRPEGGSPSPAGTPPQPKRPRP--GVSKDGLLSPGAWNGEPSGEGSRSVTPSEGA---- 530
Query: 77 SLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDS 136
RS E++A + LQ + S V+ +H SY+V +
Sbjct: 531 ---GRRSPARPATERMA------IEALQAPPAPSREPEVALYQGYH-------SYAVRTT 574
Query: 137 YAEYKSFEESFPSPEL 152
E FE+ P PE+
Sbjct: 575 PPEPPPFEDQ-PEPEV 589
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 1.5
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 4 LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSG- 62
L Y+R R D G P E + G + + ERSR GSG
Sbjct: 563 LEGYSRSVRSRSGERWGADGDRGLPKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGSGQ 622
Query: 63 -SGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLH 121
S S R T E+S +EN SSE T++ SL +S +E H
Sbjct: 623 QSERGSDR---TPERSRKENHSSEGTKESSSNSL----------SNSRHGAEERGHHHHH 669
Query: 122 HGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQ 171
H A S DS +++ E P+ + + + NL E+ Q
Sbjct: 670 HEAADSSHGKKARDSERNHRTTE---AEPKPLEEPKHETKKLKNLSEYAQ 716
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 30.0 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 PTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLG 71
P + +PA + P G G GL +AE + S GG GP P LG
Sbjct: 269 PAANPPAPAASSTPHGHCPNGVTAGLGPVAE-VKSSPVGGGPRGPAGPALG 318
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 29.6 bits (65), Expect = 2.0
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 14 GQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVT 73
G++ TP +PAKA PG +KG G + +A ++ G P G
Sbjct: 86 GKKAAATPAKKTVTPAKAVTTPG--KKGATPGKALVATPGKK--------GAAIPAKGAK 135
Query: 74 GEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
K N ED+ +E+ E DD D E
Sbjct: 136 NGK----NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIE 171
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 29.6 bits (65), Expect = 2.0
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 2/129 (1%)
Query: 21 PTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQE 80
P P + + P K G+ K + R G S L GE++ QE
Sbjct: 912 PRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQE 971
Query: 81 NRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEY 140
+ S +D +D++ E + VD++ +E+ G +S Y+ +D +
Sbjct: 972 SSSEKDEEDDE--EDEEDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDS 1029
Query: 141 KSFEESFPS 149
S ES S
Sbjct: 1030 TSDSESSSS 1038
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 29.6 bits (65), Expect = 2.0
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 19 LTPTP--DLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEK 76
LTP P G+ ++ + PPG ++ A + R GG G+ RL + G
Sbjct: 1103 LTPVPLRSEGNSSEFQGPPGL-----------LSGPAPQKRMGGPGTPRAPLRLALPGLP 1151
Query: 77 SLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
+ E R E+ +D + + + V S +SE
Sbjct: 1152 AALEGRPEEEEEDSEDSDESDEELRCYSVQEPSEDSE 1188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,653,112
Number of Sequences: 37866
Number of extensions: 406301
Number of successful extensions: 1686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 115
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.