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Search of human proteins with 239753576
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
(423 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 873 0.0
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 870 0.0
gi|239741982 PREDICTED: hypothetical protein [Homo sapiens] 865 0.0
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 50 4e-06
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 45 2e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 4e-04
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 43 5e-04
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 43 5e-04
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens] 40 0.004
gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens] 40 0.004
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 40 0.005
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 40 0.005
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.007
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 39 0.007
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 39 0.009
gi|126352446 elastin isoform d precursor [Homo sapiens] 39 0.012
gi|126352322 elastin isoform c precursor [Homo sapiens] 39 0.012
gi|126352700 elastin isoform b precursor [Homo sapiens] 39 0.012
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.012
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.012
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 39 0.012
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 39 0.012
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 39 0.012
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 39 0.012
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 873 bits (2256), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT
Sbjct: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
Query: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS
Sbjct: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
Query: 121 AELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
AELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN
Sbjct: 121 AELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
Query: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA
Sbjct: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
Query: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA
Sbjct: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
Query: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE 360
AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE
Sbjct: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE 360
Query: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR
Sbjct: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
Query: 421 RSD 423
RSD
Sbjct: 421 RSD 423
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 870 bits (2247), Expect = 0.0
Identities = 422/423 (99%), Positives = 422/423 (99%)
Query: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT
Sbjct: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
Query: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS
Sbjct: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
Query: 121 AELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
AELAWRVSGGGSGTRLRQESPGVQGRP DGYAGGPGHGGQERIHACSLGAGRRCGGAGGN
Sbjct: 121 AELAWRVSGGGSGTRLRQESPGVQGRPRDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
Query: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA
Sbjct: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
Query: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA
Sbjct: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
Query: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE 360
AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE
Sbjct: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE 360
Query: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR
Sbjct: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
Query: 421 RSD 423
RSD
Sbjct: 421 RSD 423
>gi|239741982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 865 bits (2235), Expect = 0.0
Identities = 420/423 (99%), Positives = 421/423 (99%)
Query: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT
Sbjct: 1 MTASNLKEGSLVKILVCKVWTIAKLNTTLMWESLLTKYLHDEDNALSLGCQSLADGELCT 60
Query: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS
Sbjct: 61 EEKIKTSDQVGSGLGSHPQGVHLVLHVRTFSLAQSKESPRALRLRIHSGGARCYYCGIVS 120
Query: 121 AELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
AELAWRVSGGGSGTRLRQESPGVQGRP DGYAGGPGHGGQERIHACSLGAGRRCGGAGGN
Sbjct: 121 AELAWRVSGGGSGTRLRQESPGVQGRPRDGYAGGPGHGGQERIHACSLGAGRRCGGAGGN 180
Query: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA
Sbjct: 181 VPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGA 240
Query: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA
Sbjct: 241 EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPA 300
Query: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTE 360
AVPAAWEGTDRRRGRRRRRPS RNGTEGST+AGWLGTATLACSLPPHALLLPSEAARGTE
Sbjct: 301 AVPAAWEGTDRRRGRRRRRPSWRNGTEGSTEAGWLGTATLACSLPPHALLLPSEAARGTE 360
Query: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR
Sbjct: 361 WERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASRTHR 420
Query: 421 RSD 423
RSD
Sbjct: 421 RSD 423
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 50.1 bits (118), Expect = 4e-06
Identities = 66/212 (31%), Positives = 77/212 (36%), Gaps = 43/212 (20%)
Query: 141 PGVQGRP----PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARG 196
PG+QGRP P G G PG GQE H AG GA G H A G
Sbjct: 364 PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGN--PGAPG-----------HVGAPG 410
Query: 197 SCALSPALGL--AENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPP 254
++G PG + RG AG GPV P G A LP PP
Sbjct: 411 PSGPPGSVGAPGLRGTPGKDGERGEKG-AAGEEGSPGPV--GPRGDPGAP----GLPGPP 463
Query: 255 GCGGSGARGLR-----PEQLWSHVQHARCPQPG----RGPDASGAAGRSRAPPPAAVPAA 305
G G G GLR P L + PG RG G AG PP + P
Sbjct: 464 GKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAG----PPGPSGPPG 519
Query: 306 WEGTDRRRG----RRRRRPSGRNGTEGSTKAG 333
+G+ RG + P+GR+G G
Sbjct: 520 DKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPG 551
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 46.6 bits (109), Expect = 4e-05
Identities = 74/251 (29%), Positives = 89/251 (35%), Gaps = 55/251 (21%)
Query: 127 VSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQER--------IHACSLGAGRRCGGAG 178
VS G G+ L + S PP GGP + R + LG C G
Sbjct: 52 VSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRA 111
Query: 179 GNVPVFFLINDAHAAA-RGSCA---LSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVL 234
G+ A +AA RG A + PAL GP + A P G G
Sbjct: 112 GSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP----PRASPGGR---PGSEA 164
Query: 235 DAPSGAEAATLAGVRLP---PPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAA 291
SGAE A R+P PPG G G+ R QL P RGP G +
Sbjct: 165 RGRSGAECAR----RVPLHHGPPGASGVGSERDRKFQLHQ--------TPARGPPFPGIS 212
Query: 292 GRSRAP------------PPAAVPA---AWEGTDR-RRGRRRRRPSGRNGTEGSTKAGWL 335
G +R P PP A P+ G +R R RR R GR G G
Sbjct: 213 GMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP----- 267
Query: 336 GTATLACSLPP 346
G ACS+ P
Sbjct: 268 GGGIPACSIGP 278
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 46.6 bits (109), Expect = 4e-05
Identities = 74/251 (29%), Positives = 89/251 (35%), Gaps = 55/251 (21%)
Query: 127 VSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQER--------IHACSLGAGRRCGGAG 178
VS G G+ L + S PP GGP + R + LG C G
Sbjct: 52 VSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRA 111
Query: 179 GNVPVFFLINDAHAAA-RGSCA---LSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVL 234
G+ A +AA RG A + PAL GP + A P G G
Sbjct: 112 GSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASP----PRASPGGR---PGSEA 164
Query: 235 DAPSGAEAATLAGVRLP---PPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAA 291
SGAE A R+P PPG G G+ R QL P RGP G +
Sbjct: 165 RGRSGAECAR----RVPLHHGPPGASGVGSERDRKFQLHQ--------TPARGPPFPGIS 212
Query: 292 GRSRAP------------PPAAVPA---AWEGTDR-RRGRRRRRPSGRNGTEGSTKAGWL 335
G +R P PP A P+ G +R R RR R GR G G
Sbjct: 213 GMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP----- 267
Query: 336 GTATLACSLPP 346
G ACS+ P
Sbjct: 268 GGGIPACSIGP 278
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 44.7 bits (104), Expect = 2e-04
Identities = 65/224 (29%), Positives = 81/224 (36%), Gaps = 55/224 (24%)
Query: 141 PGVQGRP----PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARG 196
PG+QGRP P G G PG GQE H AG GA G H A G
Sbjct: 882 PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGN--PGAPG-----------HVGAPG 928
Query: 197 SCALSPALGL--AENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPP 254
++G PG + RG AG GPV P G A LP PP
Sbjct: 929 PSGPPGSVGAPGLRGTPGKDGERGEKG-AAGEEGSPGPV--GPRGDPGAP----GLPGPP 981
Query: 255 GCGGSGARGLR-----PEQLWSHVQ------------HARCPQPGRG----PDASGAAGR 293
G G G GLR P L + +C + RG P + G+ G
Sbjct: 982 GKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGD 1041
Query: 294 S----RAPPPAAVPAAWEGTDRRRG----RRRRRPSGRNGTEGS 329
PP + P +G+ RG + P+GR+G G+
Sbjct: 1042 PGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGN 1085
Score = 35.0 bits (79), Expect = 0.13
Identities = 55/214 (25%), Positives = 69/214 (32%), Gaps = 47/214 (21%)
Query: 130 GGSGTRLRQESPGVQG-RPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLIN 188
G G R + + G +G R DG+ G PG GQ+ S AG + G G P
Sbjct: 587 GLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQ-GEKGDVGPA----- 640
Query: 189 DAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAAT---- 244
GS L + PG ++G P P + D P G +
Sbjct: 641 -GPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKG 699
Query: 245 ---------LAGVRLPP-PPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRS 294
L G++ PP PPG G P PG P G G
Sbjct: 700 DMGPPGIPGLLGLQGPPGPPGVPGP-------------------PGPGGSPGLPGEIGFP 740
Query: 295 RAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEG 328
P P P G D G P G GT+G
Sbjct: 741 GKPGPPG-PTGPPGKDGPNG-----PPGPPGTKG 768
Score = 32.3 bits (72), Expect = 0.83
Identities = 49/170 (28%), Positives = 57/170 (33%), Gaps = 48/170 (28%)
Query: 128 SGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLI 187
S G G R +PG+ G P G G PG G + LG CG G+
Sbjct: 962 SPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPG-PLGTKAACGKVRGS------- 1013
Query: 188 NDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAG 247
+ A G C A PG+ RG P I + GP PSG
Sbjct: 1014 --ENCALGGQCVKGDR--GAPGIPGSPGSRGDP-----GIGVAGP--PGPSG-------- 1054
Query: 248 VRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAP 297
PP G G+RGL PG P G AGR AP
Sbjct: 1055 ----PPGDKGSPGSRGL----------------PG-FPGPQGPAGRDGAP 1083
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 43.9 bits (102), Expect = 3e-04
Identities = 69/222 (31%), Positives = 75/222 (33%), Gaps = 64/222 (28%)
Query: 123 LAWRVSG--GGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHA----------CSLGA 170
L WR G +G R P V G PG GG A S A
Sbjct: 35 LFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAA 94
Query: 171 GRRCGGAGGNVPVFFLINDAHAAARGSCAL---SPALGLAENGPGNEWYRGRPAHPAGAI 227
GRR G AG A RG A SPA G A P AG
Sbjct: 95 GRRAGPAGP---------PCRAPGRGRAAATRRSPAPGTARGSPAG-------VERAGGA 138
Query: 228 TLDGPVLDAPSGAEAATLAGVRLPPPPGCG----GSGARGLR-------PEQLWSHVQHA 276
T A S A ++ RLPPP CG G+G+R LR P S + A
Sbjct: 139 T-------AASSAGTRSVPARRLPPP--CGGTSLGAGSRALRRPGSAALPRSPSSSRRWA 189
Query: 277 RCPQPGR-GPDASG------------AAGRSRAPPPAAVPAA 305
P PG P A G AA S APPP AV A
Sbjct: 190 AMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGA 231
Score = 29.3 bits (64), Expect = 7.1
Identities = 40/138 (28%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 215 WYRGRPAHPAGAITLDGPVLDAPS---GAEAATLAGVRL--PPPPGCGGSGARGLRPEQL 269
W + PAGA P AP+ G++ AG L P G AR R
Sbjct: 37 WRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGR 96
Query: 270 WSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGS 329
+ C PGRG AA R+P P G R P+G G+
Sbjct: 97 RAGPAGPPCRAPGRGR----AAATRRSPAP--------------GTARGSPAGVERAGGA 138
Query: 330 TKAGWLGTATL-ACSLPP 346
T A GT ++ A LPP
Sbjct: 139 TAASSAGTRSVPARRLPP 156
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.5 bits (101), Expect = 4e-04
Identities = 47/164 (28%), Positives = 56/164 (34%), Gaps = 29/164 (17%)
Query: 147 PPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGL 206
P G GPG G GA + G+ L+N HAAA PA+ L
Sbjct: 176 PGPGPGPGPGPG-----KPAGPGAAQTLNGSAA------LLNSHHAAA-------PAVSL 217
Query: 207 AENGPGNEWYRGRPAHP---------AGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCG 257
NGP +PA P GA P +P A A PPPP
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277
Query: 258 GSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAA 301
+ AR P A P G+AG + AP PAA
Sbjct: 278 ATLAR--PPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA 319
Score = 36.2 bits (82), Expect = 0.058
Identities = 56/206 (27%), Positives = 71/206 (34%), Gaps = 18/206 (8%)
Query: 98 SPRALRLRIHSGGARCYYCGIVSAELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGH 157
+PR +R + GA + +VS A G + + +PG PP PG
Sbjct: 44 APRTPEVRAAAAGALGNH--VVSGSPAGAAGAGPAAPA--EGAPGAAPEPPPAGRARPGG 99
Query: 158 GGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYR 217
GG +R S RR G P + + GSCA PA GP E
Sbjct: 100 GGPQRPGPPS---PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGP--EPAP 154
Query: 218 GRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPG--CGGSGARGLRPEQLWSHVQH 275
PA PAG L A +G G P PG G A+ L + H
Sbjct: 155 AGPAKPAGP-----AALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHH 209
Query: 276 ARCPQPGRGPDASGAAGRSRAPPPAA 301
A P +G A P PAA
Sbjct: 210 AAAPAVSL--VNNGPAALLPLPKPAA 233
Score = 33.5 bits (75), Expect = 0.37
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 220 PAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCP 279
P HPAG T P + P+ A+ AG P P GG +P A
Sbjct: 284 PGHPAGPPTA-APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG------PGAAAA 336
Query: 280 QPGRGPDASGAAGRSRAPPPAAVPAAWEG 308
P G A +A PPAA A G
Sbjct: 337 APAPGVKAESPKRVVQAAPPAAQTLAASG 365
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 43.1 bits (100), Expect = 5e-04
Identities = 58/214 (27%), Positives = 73/214 (34%), Gaps = 34/214 (15%)
Query: 137 RQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGR-RCGGAGGNVPVFFLINDAHAAAR 195
R PG G P GG G GG+ C+ G GR C G+GG AR
Sbjct: 80 RGAGPGAAG-PRAAGRGGAGGGGR----CCTRGRGRFPCAGSGGR------------GAR 122
Query: 196 GSCALSPALGLAENGPGNEW--YRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPP 253
SP+ + + + W RGR A P + L + P A LP
Sbjct: 123 SRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIAPRPRPA---------LPAA 173
Query: 254 PGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRR 313
G GL ++ + A GR AS PP P G R
Sbjct: 174 LHIGARATAGLAAKRAQPQLCSAGTAARGRRTRASPPT-----PPRPRPPGLRSGDVPRG 228
Query: 314 GRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPH 347
G R RP+GR G G A + L +P H
Sbjct: 229 GARVERPTGRRGAGGRGGAQRIPPRPLRRLVPIH 262
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 43.1 bits (100), Expect = 5e-04
Identities = 58/214 (27%), Positives = 73/214 (34%), Gaps = 34/214 (15%)
Query: 137 RQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGR-RCGGAGGNVPVFFLINDAHAAAR 195
R PG G P GG G GG+ C+ G GR C G+GG AR
Sbjct: 80 RGAGPGAAG-PRAAGRGGAGGGGR----CCTRGRGRFPCAGSGGR------------GAR 122
Query: 196 GSCALSPALGLAENGPGNEW--YRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPP 253
SP+ + + + W RGR A P + L + P A LP
Sbjct: 123 SRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIAPRPRPA---------LPAA 173
Query: 254 PGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRR 313
G GL ++ + A GR AS PP P G R
Sbjct: 174 LHIGARATAGLAAKRAQPQLCSAGTAARGRRTRASPPT-----PPRPRPPGLRSGDVPRG 228
Query: 314 GRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPH 347
G R RP+GR G G A + L +P H
Sbjct: 229 GARVERPTGRRGAGGRGGAQRIPPRPLRRLVPIH 262
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 42.0 bits (97), Expect = 0.001
Identities = 54/195 (27%), Positives = 67/195 (34%), Gaps = 34/195 (17%)
Query: 137 RQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGR-RCGGAGGNVPVFFLINDAHAAAR 195
R PG G P GG G GG+ C+ G GR C G+GG AR
Sbjct: 80 RGAGPGAAG-PRAAGRGGAGGGGR----CCTRGRGRFPCAGSGGR------------GAR 122
Query: 196 GSCALSPALGLAENGPGNEW--YRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPP 253
SP+ + + + W RGR A P + L + P A LP
Sbjct: 123 SRGCHSPSCCRSSSCAWHRWPQLRGREADPRASPALLICIAPRPRPA---------LPAA 173
Query: 254 PGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRR 313
G GL ++ + A GR AS PP P G R
Sbjct: 174 LHIGARATAGLAAKRAQPQLCSAGTAARGRRTRASPPT-----PPRPRPPGLRSGDVPRG 228
Query: 314 GRRRRRPSGRNGTEG 328
G R RP+GR G G
Sbjct: 229 GARVERPTGRRGAGG 243
>gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 40.0 bits (92), Expect = 0.004
Identities = 48/164 (29%), Positives = 65/164 (39%), Gaps = 17/164 (10%)
Query: 161 ERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRP 220
+R H C GAG R GGAG P + + A +A G G G E
Sbjct: 116 KRPHQCDAGAGGRRGGAG--APREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDL 173
Query: 221 AHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQ 280
+ + L P P +AA+ P G G G RG R ++ W + A P
Sbjct: 174 SELSDTDPLSEP---DPPARDAAS------PHQDGAPGPGPRGGRGQE-W---RPAPGPA 220
Query: 281 PGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRN 324
PG+G +AS PA A +G + RRRR+ GR+
Sbjct: 221 PGQGAEASAQGRAEEEGLPAKAHA--DGEPKAGVRRRRKGVGRH 262
>gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 40.0 bits (92), Expect = 0.004
Identities = 48/164 (29%), Positives = 65/164 (39%), Gaps = 17/164 (10%)
Query: 161 ERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRP 220
+R H C GAG R GGAG P + + A +A G G G E
Sbjct: 116 KRPHQCDAGAGGRRGGAG--APREWNVAYALGSATGDDDEDDGGGPRLRGAAEETRDSDL 173
Query: 221 AHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQ 280
+ + L P P +AA+ P G G G RG R ++ W + A P
Sbjct: 174 SELSDTDPLSEP---DPPARDAAS------PHQDGAPGPGPRGGRGQE-W---RPAPGPA 220
Query: 281 PGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRN 324
PG+G +AS PA A +G + RRRR+ GR+
Sbjct: 221 PGQGAEASAQGRAEEEGLPAKAHA--DGEPKSGVRRRRKGVGRH 262
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 39.7 bits (91), Expect = 0.005
Identities = 72/248 (29%), Positives = 88/248 (35%), Gaps = 20/248 (8%)
Query: 170 AGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITL 229
A R GG+ G P GS G ++ G G P P G+
Sbjct: 89 ATSRLGGSRGPHPTL------PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQE 142
Query: 230 DGPVLDAPSGAEAATLAGVRLPPPPGCGG---SGARGLRPEQLWSHVQHAR-CPQPGRGP 285
G SGA A P G GARG P AR QPGR P
Sbjct: 143 RGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRP 202
Query: 286 DASGAA---GRSRAPPPAAVPAAWEGTDRRR-GR--RRRRPSGRNGTEGSTKAGWLGTAT 339
AA G A A PA G DR R GR RRR P G +AG AT
Sbjct: 203 GLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLAT 262
Query: 340 LACSLP-PHALL--LPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPA 396
+ P P A L L S+ + + G E R+ + ++ R D R + +P
Sbjct: 263 CRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHVSPVL-RPDRTPRAFRALSQRPP 321
Query: 397 RVAALRAE 404
RV L+ E
Sbjct: 322 RVPELQQE 329
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 39.7 bits (91), Expect = 0.005
Identities = 75/274 (27%), Positives = 102/274 (37%), Gaps = 28/274 (10%)
Query: 154 GPGHGGQERIHACSLGAGRRCGGAGGNVPV----FFLINDAHAAARGSCALSPALGLAEN 209
G G GG+ R A +L + G A +P L D A RG C + G A+
Sbjct: 148 GQGRGGRRRRAADTLF---QLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQE 204
Query: 210 GPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQL 269
N + R PAG + L L AP A AG G G RG L
Sbjct: 205 QLRNAPWAPRAHSPAGRLALG---LIAP--RRGAGRAGA------GAAACGRRGRIAAPL 253
Query: 270 WSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVP-AAWEGTDRRRGRRRRRPSGRNGTEG 328
VQ A +P P + P AA+P + + G R RG +GR G+ G
Sbjct: 254 SGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRG---GAAAGR-GSRG 309
Query: 329 STKAGWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTD 388
A +G A P L + G W T E ++ A RR DG +
Sbjct: 310 EHPACGVGLARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQDGQRRTRDGAGN 367
Query: 389 QRTDWQPARVAALRAERSK-ARIPRRAASRTHRR 421
+ +PARV + R + R+PR + +R
Sbjct: 368 HAS--EPARVWSPPPRRQRPRRLPRASLQEEPKR 399
Score = 32.0 bits (71), Expect = 1.1
Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 186 LINDAHAAARGSCALSPALGLAENGPGNEWY---RG-RPAHPAGAITLDGPVLDAPSGAE 241
L++ AAAR A P G + G RG R HPA + L P+
Sbjct: 271 LLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTW 330
Query: 242 AATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAA 301
A L P GG+ ++ +H R + G G AS A PP
Sbjct: 331 A-------LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQ 383
Query: 302 VPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAG---WLGTATLACSLPPHA 348
P + +RR P R G + G W G A PPHA
Sbjct: 384 RPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA----PTPPHA 429
Score = 30.8 bits (68), Expect = 2.4
Identities = 73/283 (25%), Positives = 94/283 (33%), Gaps = 69/283 (24%)
Query: 142 GVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALS 201
G GRP G G + AC +G R G P A+ + A
Sbjct: 290 GFSGRPRGRGGAAAGRGSRGEHPACGVGLAR------GTAP--------QPASTWALAAR 335
Query: 202 PALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGA 261
P G E RG T DG +G A+ A V PPP
Sbjct: 336 PRAGGTWTS-RFEAQRGCAHQDGQRRTRDG------AGNHASEPARVWSPPP-------- 380
Query: 262 RGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEG------TDRRRGR 315
R RP +L + + +P R P + +G A P PAAW G R GR
Sbjct: 381 RRQRPRRL---PRASLQEEPKRRPPCARPSG---AGPAREGPAAWPGGAPTPPHARPTGR 434
Query: 316 RR-RRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDA 374
R+ P R G +GW HA +A G W+ G+ R+R A
Sbjct: 435 RQDPEPGPRAPRGGPASSGW------------HA-----GSAAGRGWDPGGGSRARRRAA 477
Query: 375 ALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPRRAASR 417
GR R+ L + RS R+ R AA R
Sbjct: 478 R---------GRGCLRSARSSPHARPLGSSRS-VRLLRSAAGR 510
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 39.7 bits (91), Expect = 0.005
Identities = 72/248 (29%), Positives = 88/248 (35%), Gaps = 20/248 (8%)
Query: 170 AGRRCGGAGGNVPVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITL 229
A R GG+ G P GS G ++ G G P P G+
Sbjct: 89 ATSRLGGSRGPHPTL------PPGPAGSLVFPERRGSLQDRLGRASRPGCPPSPRGSRQE 142
Query: 230 DGPVLDAPSGAEAATLAGVRLPPPPGCGG---SGARGLRPEQLWSHVQHAR-CPQPGRGP 285
G SGA A P G GARG P AR QPGR P
Sbjct: 143 RGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARPSTQPGRRP 202
Query: 286 DASGAA---GRSRAPPPAAVPAAWEGTDRRR-GR--RRRRPSGRNGTEGSTKAGWLGTAT 339
AA G A A PA G DR R GR RRR P G +AG AT
Sbjct: 203 GLGRAASPLGPRGAGVTGAGPATQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLAT 262
Query: 340 LACSLP-PHALL--LPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTDQRTDWQPA 396
+ P P A L L S+ + + G E R+ + ++ R D R + +P
Sbjct: 263 CRGNAPTPSACLTWLESKNKKNYDAGEACGGEKRRFHVSPVL-RPDRTPRAFRALSQRPP 321
Query: 397 RVAALRAE 404
RV L+ E
Sbjct: 322 RVPELQQE 329
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 39.7 bits (91), Expect = 0.005
Identities = 75/274 (27%), Positives = 102/274 (37%), Gaps = 28/274 (10%)
Query: 154 GPGHGGQERIHACSLGAGRRCGGAGGNVPV----FFLINDAHAAARGSCALSPALGLAEN 209
G G GG+ R A +L + G A +P L D A RG C + G A+
Sbjct: 148 GQGRGGRRRRAADTLF---QLGPAWPALPAPAAGRALGTDEPLALRGQCGPAARRGCAQE 204
Query: 210 GPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQL 269
N + R PAG + L L AP A AG G G RG L
Sbjct: 205 QLRNAPWAPRAHSPAGRLALG---LIAP--RRGAGRAGA------GAAACGRRGRIAAPL 253
Query: 270 WSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVP-AAWEGTDRRRGRRRRRPSGRNGTEG 328
VQ A +P P + P AA+P + + G R RG +GR G+ G
Sbjct: 254 SGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRG---GAAAGR-GSRG 309
Query: 329 STKAGWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTD 388
A +G A P L + G W T E ++ A RR DG +
Sbjct: 310 EHPACGVGLARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQDGQRRTRDGAGN 367
Query: 389 QRTDWQPARVAALRAERSK-ARIPRRAASRTHRR 421
+ +PARV + R + R+PR + +R
Sbjct: 368 HAS--EPARVWSPPPRRQRPRRLPRASLQEEPKR 399
Score = 32.0 bits (71), Expect = 1.1
Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 186 LINDAHAAARGSCALSPALGLAENGPGNEWY---RG-RPAHPAGAITLDGPVLDAPSGAE 241
L++ AAAR A P G + G RG R HPA + L P+
Sbjct: 271 LLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTW 330
Query: 242 AATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAA 301
A L P GG+ ++ +H R + G G AS A PP
Sbjct: 331 A-------LAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQ 383
Query: 302 VPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAG---WLGTATLACSLPPHA 348
P + +RR P R G + G W G A PPHA
Sbjct: 384 RPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGA----PTPPHA 429
Score = 30.4 bits (67), Expect = 3.2
Identities = 62/240 (25%), Positives = 80/240 (33%), Gaps = 59/240 (24%)
Query: 142 GVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGSCALS 201
G GRP G G + AC +G R G P A+ + A
Sbjct: 290 GFSGRPRGRGGAAAGRGSRGEHPACGVGLAR------GTAP--------QPASTWALAAR 335
Query: 202 PALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGA 261
P G E RG T DG +G A+ A V PPP
Sbjct: 336 PRAGGTWTS-RFEAQRGCAHQDGQRRTRDG------AGNHASEPARVWSPPP-------- 380
Query: 262 RGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEG------TDRRRGR 315
R RP +L + + +P R P + +G A P PAAW G R GR
Sbjct: 381 RRQRPRRL---PRASLQEEPKRRPPCARPSG---AGPAREGPAAWPGGAPTPPHARPTGR 434
Query: 316 RR-RRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDA 374
R+ P R G +GW HA +A G W+ G+ R+R A
Sbjct: 435 RQDPEPGPRAPRGGPASSGW------------HA-----GSAAGRGWDPGGGSRARRRAA 477
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.007
Identities = 60/211 (28%), Positives = 75/211 (35%), Gaps = 35/211 (16%)
Query: 130 GGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGR-----RCGGAGGNVPVF 184
G SG + PG G P G AG PG G+E GR G G P
Sbjct: 986 GPSGASGERGPPGPMG--PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA- 1042
Query: 185 FLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPV-LDAPSGAEAA 243
A A P ++G E PA P G + GP P G +
Sbjct: 1043 ----GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGE 1098
Query: 244 TLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCP--QPG-RGPD-ASGAAGRSRAPPP 299
T G G RG++ + +S +Q P PG +GP ASG AG R PP
Sbjct: 1099 T------------GEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAG-PRGPPG 1145
Query: 300 AAVPAAWEGTDRRRGRRRRRPSGRNGTEGST 330
+A +G + G P G G G T
Sbjct: 1146 SAGAPGKDGLNGLPG-----PIGPPGPRGRT 1171
Score = 37.7 bits (86), Expect = 0.020
Identities = 68/225 (30%), Positives = 79/225 (35%), Gaps = 40/225 (17%)
Query: 130 GGSGTRLRQESPGVQGRPPD-GYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLIN 188
G G Q +PG+QG P + G AG PG G +R A GA G G +
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGLPGPKG-DRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 189 DAHAAARGSCALSPALGL-----AENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEA- 242
A A G S G A PG+ RG P P A P D GA+
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGD---RGEPGPPGPAGFAGPPGADGQPGAKGE 828
Query: 243 ---ATLAGVRLPP-------PPG----CGGSGARGLRPEQLWSHVQHARCPQPGRGPDAS 288
A G PP PPG G GA+G R A P P A+
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS--------AGPPGATGFPGAA 880
Query: 289 GAAG-----RSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEG 328
G G + PP PA EG RG P+GR G G
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG--ETGPAGRPGEVG 923
Score = 36.6 bits (83), Expect = 0.044
Identities = 58/179 (32%), Positives = 66/179 (36%), Gaps = 17/179 (9%)
Query: 140 SPGVQGRPPDGYAGGPGHGGQERIHA--CSLGAGRRCGGAGGNVPVFFLINDAHAAARGS 197
SPG G PDG G PG GQ+ GA + G G P A RG
Sbjct: 543 SPGSPG--PDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGV 600
Query: 198 CALSPALGLA-ENGPGNEWYRGRPAHPAGAITLDGPV-------LDAPSG--AEAATLAG 247
A+G A ++G PA PAG GP L P+G EA
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE 660
Query: 248 VRLPPPPGC-GGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAA 305
+P G G SGARG R VQ P RG A+GA G A A P A
Sbjct: 661 QGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG--ANGAPGNDGAKGDAGAPGA 717
Score = 30.8 bits (68), Expect = 2.4
Identities = 57/218 (26%), Positives = 72/218 (33%), Gaps = 57/218 (26%)
Query: 130 GGSGTRLRQESPGVQGRP-------PDGYAGGPGHGGQERIHACSLGAG-RRCGGAGGNV 181
G +G PG QG P P G G G G+ + AG R GA GN
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGN- 705
Query: 182 PVFFLINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLD----AP 237
A+G A G ++ PG +G P GA L GP D P
Sbjct: 706 ----------DGAKGDAGAPGAPG-SQGAPG---LQGMPGE-RGAAGLPGPKGDRGDAGP 750
Query: 238 SGAEAAT-LAGVR-----LPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAA 291
GA+ + GVR + PP G G +G P GP + A
Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG------------ESGPSGPAGPTGARGA 798
Query: 292 GRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGS 329
R P PA + G P G +G G+
Sbjct: 799 PGDRGEPGPPGPAGFAG-----------PPGADGQPGA 825
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 39.3 bits (90), Expect = 0.007
Identities = 60/213 (28%), Positives = 76/213 (35%), Gaps = 33/213 (15%)
Query: 130 GGSGTRLRQESPG---VQGRP-PDGYAGGPGHGG-QERIHACSLGAGRRCGGAG------ 178
G GT+ Q PG +QG P P G GGPG G Q + L G G
Sbjct: 733 GPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRE 792
Query: 179 --GNVPVFFLINDAHAAARGSCALSPALGLAENGP----GNEWYRGRPAHPAGAITLDGP 232
G P ++ RG P GL +GP G + RG P L P
Sbjct: 793 NQGPAPQGMIMGHPPQEMRGP---HPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPP 849
Query: 233 V-LDAPSGAEAAT-----------LAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQ 280
L P G+++ G++ PP P + ARG P Q Q + P
Sbjct: 850 QELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPL 909
Query: 281 PGRGPDAS-GAAGRSRAPPPAAVPAAWEGTDRR 312
G GP A G+S PPP +G R
Sbjct: 910 LGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGR 942
Score = 33.1 bits (74), Expect = 0.49
Identities = 53/215 (24%), Positives = 68/215 (31%), Gaps = 32/215 (14%)
Query: 137 RQESPGVQGRPP----DGYAGGPGHGGQERIHACSLGA-GRRCGGAGGNVPV-----FFL 186
R P +GR P DG+ G G +E A A GR G G P
Sbjct: 1106 RGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRGRGRGTPRGGRKGLLP 1165
Query: 187 INDAHAAARGSCALSPALGLAENGPGNEWYRG--RPAHPA--GAITLDGPVLDAPSGAEA 242
D G G E GPG+E +R RP HP G + G +
Sbjct: 1166 TPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDM 1225
Query: 243 ATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAV 302
A+L + P G G S +H PG + G GR P V
Sbjct: 1226 ASLPPRKRPWHDGPGTS--------------EHREMEAPGGPSEDRGGKGRGGPGPAQRV 1271
Query: 303 PAAWEGT----DRRRGRRRRRPSGRNGTEGSTKAG 333
P + + + G R P G G+ G
Sbjct: 1272 PKSGRSSSLDGEHHDGYHRDEPFGGPPGSGTPSRG 1306
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 38.9 bits (89), Expect = 0.009
Identities = 52/173 (30%), Positives = 62/173 (35%), Gaps = 43/173 (24%)
Query: 140 SPGVQGRP----PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAAR 195
S GV+G P P G G PG GQ+ G AG P
Sbjct: 502 SQGVKGEPGDPGPPGLIGSPGLKGQQ-------------GSAGSMGP---------RGPP 539
Query: 196 GSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPG 255
G L G+ PG + +G P G I P L P G A G LP PG
Sbjct: 540 GDVGLPGEHGI----PGKQGIKGEKGDPGGII--GPPGLPGPKGE--AGPPGKSLPGEPG 591
Query: 256 CGGS----GARGLRPEQLWSHVQHARCPQPGR-GPDASGAAGRSRAPPPAAVP 303
G+ G RG + E+ V + PG GP G GR+ A PA P
Sbjct: 592 LDGNPGAPGPRGPKGERGLPGVHGS----PGDIGPQGIGIPGRTGAQGPAGEP 640
Score = 30.8 bits (68), Expect = 2.4
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 22/175 (12%)
Query: 141 PGVQGRPPD-------GYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAA 193
PG+ GR GY G PG G E + G G G P + H
Sbjct: 737 PGIPGREGPKGSKGERGYPGIPGEKGDEGLQ----GIPGIPGAPGPTGPPGLMGRTGHPG 792
Query: 194 ARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPP 253
G+ + G PG G P P + G + G PP
Sbjct: 793 PTGAKGEKGSDG----PPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPG 848
Query: 254 PG-----CGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVP 303
P G GA GL + + V+ R P P +G +G+ AP P VP
Sbjct: 849 PKGDPGPVGEPGAMGLPGLEGFPGVKGDR--GPAGPPGIAGMSGKPGAPGPPGVP 901
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 38.5 bits (88), Expect = 0.012
Identities = 50/166 (30%), Positives = 57/166 (34%), Gaps = 32/166 (19%)
Query: 152 AGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGS---CALSPALGLAE 208
AG PG G + +GAG G G VP F + A AAA+ + A+ LG
Sbjct: 553 AGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLG--- 609
Query: 209 NGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQ 268
G G G P GA GP A + AA A L G GG G GL
Sbjct: 610 -GLGALGGVGIPGGVVGA----GPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGL---- 660
Query: 269 LWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRG 314
G G PP AA AA G R G
Sbjct: 661 -----------------GVPGVGGLGGIPPAAAAKAAKYGVAARPG 689
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 38.5 bits (88), Expect = 0.012
Identities = 50/166 (30%), Positives = 57/166 (34%), Gaps = 32/166 (19%)
Query: 152 AGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGS---CALSPALGLAE 208
AG PG G + +GAG G G VP F + A AAA+ + A+ LG
Sbjct: 534 AGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLG--- 590
Query: 209 NGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQ 268
G G G P GA GP A + AA A L G GG G GL
Sbjct: 591 -GLGALGGVGIPGGVVGA----GPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGL---- 641
Query: 269 LWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRG 314
G G PP AA AA G R G
Sbjct: 642 -----------------GVPGVGGLGGIPPAAAAKAAKYGVAARPG 670
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.012
Identities = 50/166 (30%), Positives = 57/166 (34%), Gaps = 32/166 (19%)
Query: 152 AGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLINDAHAAARGS---CALSPALGLAE 208
AG PG G + +GAG G G VP F + A AAA+ + A+ LG
Sbjct: 519 AGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLG--- 575
Query: 209 NGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLAGVRLPPPPGCGGSGARGLRPEQ 268
G G G P GA GP A + AA A L G GG G GL
Sbjct: 576 -GLGALGGVGIPGGVVGA----GPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGL---- 626
Query: 269 LWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRRRG 314
G G PP AA AA G R G
Sbjct: 627 -----------------GVPGVGGLGGIPPAAAAKAAKYGVAARPG 655
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.5 bits (88), Expect = 0.012
Identities = 56/211 (26%), Positives = 63/211 (29%), Gaps = 46/211 (21%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLIN 188
G +G R PG G P P G AGGPG G GA G G P
Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP-------GAKGEAGPTGARGP------ 385
Query: 189 DAHAAARGSCAL--SPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLA 246
+ RG SP A PG + G P P G A
Sbjct: 386 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 445
Query: 247 GVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDAS-GAAGRSRAPPPAAVPAA 305
L P G G G + EQ GP G AG AP PA
Sbjct: 446 TGPLGPKGQTGEPGIAGFKGEQ---------------GPKGEPGPAGPQGAPGPA----- 485
Query: 306 WEGTDRRRGRRRR-------RPSGRNGTEGS 329
G + +RG R P G G G+
Sbjct: 486 --GEEGKRGARGEPGGVGPIGPPGERGAPGN 514
Score = 33.5 bits (75), Expect = 0.37
Identities = 66/253 (26%), Positives = 77/253 (30%), Gaps = 66/253 (26%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRR-----------CGGA 177
G +G R G G P P G+AG PG GQ AG++ G
Sbjct: 813 GSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP 872
Query: 178 GGNVPVFFLINDAHAAARGSCALSPALGLA--ENGPGNEWYRGRPAHP------------ 223
G P A+G + G A PG+ G P P
Sbjct: 873 GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR 932
Query: 224 --------AGAITLDGPV----------LDAPSGAEAATLAGVRLPPPPGCGGS----GA 261
AG L GP D PSGAE P P G G G
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP-------PGPQGLAGQRGIVGL 985
Query: 262 RGLRPEQLWSHVQHARCPQPGRGPDASGAAGRS--RAPPPAAVPAAWEGTDRRRGRR--- 316
G R E+ + + P P P GA G S R PP P G GR
Sbjct: 986 PGQRGERGFPGL-----PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP 1040
Query: 317 -RRRPSGRNGTEG 328
P GR+G G
Sbjct: 1041 GADGPPGRDGAAG 1053
Score = 32.7 bits (73), Expect = 0.64
Identities = 59/223 (26%), Positives = 76/223 (34%), Gaps = 43/223 (19%)
Query: 130 GGSGTRLRQESPGVQGRP----PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFF 185
G G R R PG G P P G G PG GG G + GGA V
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG-GFDEKAGGAQLGV---- 198
Query: 186 LINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSG------ 239
G G A PG + ++G P P G + GP+ P G
Sbjct: 199 -----MQGPMGPMGPRGPPGPA-GAPGPQGFQGNPGEP-GEPGVSGPM--GPRGPPGPPG 249
Query: 240 -------AEAATLAGVRLPP-PPGC----GGSGARGLRPEQLWSHVQHARCPQPGRG-PD 286
A AG R PP P G G G G++ + + + A+ G
Sbjct: 250 KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG 309
Query: 287 ASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGS 329
SG+ G + +P P P G R G P+G G G+
Sbjct: 310 ESGSPGENGSPGPMG-PRGLPGERGRTG-----PAGAAGARGN 346
Score = 30.8 bits (68), Expect = 2.4
Identities = 65/227 (28%), Positives = 74/227 (32%), Gaps = 40/227 (17%)
Query: 128 SGGGSGTRLRQESPGVQGRP----------PDGYAGGPGHGGQERIHACSLGAGRRCGGA 177
+ G +G Q PG+QG P P G G G G E GA + GG
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-------GAPGKDGGR 785
Query: 178 GGNVPVFFLINDAHAAARGSCA----LSPALGLAENGPGNEWYRGRPAHPAGAITLDGPV 233
G P+ A A G PA G E RG P A P
Sbjct: 786 GLTGPIG---PPGPAGANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPG 840
Query: 234 LDAPSGA-----EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQ-PGRGPDA 287
D GA EA P P G SGA G + + + AR Q P
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAPGPQ--GPSGAPGPQGPTGVTGPKGARGAQGPPGATGF 898
Query: 288 SGAAGR-----SRAPPPAAVPAAWEGTDRRRGRR-RRRPSGRNGTEG 328
GAAGR S P P G D +G R P GR G G
Sbjct: 899 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 945
Score = 30.4 bits (67), Expect = 3.2
Identities = 57/208 (27%), Positives = 66/208 (31%), Gaps = 40/208 (19%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRRCG--GAGGNVPVFFL 186
G SG R PG+QG P G G PG G GA G G G + L
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPS-------GAEGPPGPQGLAGQRGIVGL 985
Query: 187 INDAHAAARGSCALSPALGLA--ENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAAT 244
RG L G + PG RG P P G L GP G E +
Sbjct: 986 --PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG-PVGPPGLTGPA--GEPGREGSP 1040
Query: 245 LAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPA 304
A PP G +G +G R E +GA G AP P P
Sbjct: 1041 GAD---GPPGRDGAAGVKGDRGE--------------------TGAVGAPGAPGPPGSPG 1077
Query: 305 AWEGTDRRRGRRRRRPSGRNGTEGSTKA 332
T ++ R G G G A
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.5 bits (88), Expect = 0.012
Identities = 56/211 (26%), Positives = 63/211 (29%), Gaps = 46/211 (21%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFFLIN 188
G +G R PG G P P G AGGPG G GA G G P
Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP-------GAKGEAGPTGARGP------ 316
Query: 189 DAHAAARGSCAL--SPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAATLA 246
+ RG SP A PG + G P P G A
Sbjct: 317 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 376
Query: 247 GVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDAS-GAAGRSRAPPPAAVPAA 305
L P G G G + EQ GP G AG AP PA
Sbjct: 377 TGPLGPKGQTGEPGIAGFKGEQ---------------GPKGEPGPAGPQGAPGPA----- 416
Query: 306 WEGTDRRRGRRRR-------RPSGRNGTEGS 329
G + +RG R P G G G+
Sbjct: 417 --GEEGKRGARGEPGGVGPIGPPGERGAPGN 445
Score = 33.5 bits (75), Expect = 0.37
Identities = 66/253 (26%), Positives = 77/253 (30%), Gaps = 66/253 (26%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRR-----------CGGA 177
G +G R G G P P G+AG PG GQ AG++ G
Sbjct: 744 GSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP 803
Query: 178 GGNVPVFFLINDAHAAARGSCALSPALGLA--ENGPGNEWYRGRPAHP------------ 223
G P A+G + G A PG+ G P P
Sbjct: 804 GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR 863
Query: 224 --------AGAITLDGPV----------LDAPSGAEAATLAGVRLPPPPGCGGS----GA 261
AG L GP D PSGAE P P G G G
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGP-------PGPQGLAGQRGIVGL 916
Query: 262 RGLRPEQLWSHVQHARCPQPGRGPDASGAAGRS--RAPPPAAVPAAWEGTDRRRGRR--- 316
G R E+ + + P P P GA G S R PP P G GR
Sbjct: 917 PGQRGERGFPGL-----PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP 971
Query: 317 -RRRPSGRNGTEG 328
P GR+G G
Sbjct: 972 GADGPPGRDGAAG 984
Score = 32.7 bits (73), Expect = 0.64
Identities = 59/223 (26%), Positives = 76/223 (34%), Gaps = 43/223 (19%)
Query: 130 GGSGTRLRQESPGVQGRP----PDGYAGGPGHGGQERIHACSLGAGRRCGGAGGNVPVFF 185
G G R R PG G P P G G PG GG G + GGA V
Sbjct: 75 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG-GFDEKAGGAQLGV---- 129
Query: 186 LINDAHAAARGSCALSPALGLAENGPGNEWYRGRPAHPAGAITLDGPVLDAPSG------ 239
G G A PG + ++G P P G + GP+ P G
Sbjct: 130 -----MQGPMGPMGPRGPPGPA-GAPGPQGFQGNPGEP-GEPGVSGPM--GPRGPPGPPG 180
Query: 240 -------AEAATLAGVRLPP-PPGC----GGSGARGLRPEQLWSHVQHARCPQPGRG-PD 286
A AG R PP P G G G G++ + + + A+ G
Sbjct: 181 KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG 240
Query: 287 ASGAAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGS 329
SG+ G + +P P P G R G P+G G G+
Sbjct: 241 ESGSPGENGSPGPMG-PRGLPGERGRTG-----PAGAAGARGN 277
Score = 30.8 bits (68), Expect = 2.4
Identities = 65/227 (28%), Positives = 74/227 (32%), Gaps = 40/227 (17%)
Query: 128 SGGGSGTRLRQESPGVQGRP----------PDGYAGGPGHGGQERIHACSLGAGRRCGGA 177
+ G +G Q PG+QG P P G G G G E GA + GG
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-------GAPGKDGGR 716
Query: 178 GGNVPVFFLINDAHAAARGSCA----LSPALGLAENGPGNEWYRGRPAHPAGAITLDGPV 233
G P+ A A G PA G E RG P A P
Sbjct: 717 GLTGPIG---PPGPAGANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPG 771
Query: 234 LDAPSGA-----EAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQ-PGRGPDA 287
D GA EA P P G SGA G + + + AR Q P
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAPGPQ--GPSGAPGPQGPTGVTGPKGARGAQGPPGATGF 829
Query: 288 SGAAGR-----SRAPPPAAVPAAWEGTDRRRGRR-RRRPSGRNGTEG 328
GAAGR S P P G D +G R P GR G G
Sbjct: 830 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 876
Score = 30.4 bits (67), Expect = 3.2
Identities = 57/208 (27%), Positives = 66/208 (31%), Gaps = 40/208 (19%)
Query: 130 GGSGTRLRQESPGVQGRP-PDGYAGGPGHGGQERIHACSLGAGRRCG--GAGGNVPVFFL 186
G SG R PG+QG P G G PG G GA G G G + L
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPS-------GAEGPPGPQGLAGQRGIVGL 916
Query: 187 INDAHAAARGSCALSPALGLA--ENGPGNEWYRGRPAHPAGAITLDGPVLDAPSGAEAAT 244
RG L G + PG RG P P G L GP G E +
Sbjct: 917 --PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG-PVGPPGLTGPA--GEPGREGSP 971
Query: 245 LAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPA 304
A PP G +G +G R E +GA G AP P P
Sbjct: 972 GAD---GPPGRDGAAGVKGDRGE--------------------TGAVGAPGAPGPPGSPG 1008
Query: 305 AWEGTDRRRGRRRRRPSGRNGTEGSTKA 332
T ++ R G G G A
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 38.5 bits (88), Expect = 0.012
Identities = 77/336 (22%), Positives = 113/336 (33%), Gaps = 60/336 (17%)
Query: 117 GIVSAELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGG 176
G++ W +G R+R + GR + G GG AC G GG
Sbjct: 499 GLLGCRTGWAAGRTLAGPRVRLGLEQLLGR----HVGAGVRGG-----AC----GPHRGG 545
Query: 177 AGGNVPVFFLINDAHAAARGSCALSPALGLAEN--GPGNEWYRGRPAHPAGA---ITLDG 231
G P+ A L+ ALG + G G PA A A I G
Sbjct: 546 IRGGRPL--------ERADDRVLLAQALGPVQRPRGAGGRLQDPWPASLALAGPGIARLG 597
Query: 232 PVLDAPSGAEAATLAGVRLPPPPGCGGSGA---RGLRPEQLWSHVQHARCPQPGRG---- 284
LD P P G GG G+ +G P S + +R P R
Sbjct: 598 CDLDGPRALVEGLHGRHEGGPLGGAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLA 657
Query: 285 ---PDASGAAGRSRAPPPAAVPAAWEGTD---------RRRGRRRRRPSGRNGTEGSTKA 332
P ++ +AG +P P + +G R+ RR R G S +A
Sbjct: 658 PPRPASATSAGSPTSPAPPLHMVSTDGCSAAFLVLDSARKGDRRSARRGGPRSWRPSARA 717
Query: 333 GWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTDQRTD 392
W+ + T P S ARG+ ++ G + +L RD + +
Sbjct: 718 SWVRSTT------PRGPEASSPRARGSFLPKSGGGSPPRPARSLAGPSRDDEPLAGAPEE 771
Query: 393 WQPARVAALRAER---------SKARIPRRAASRTH 419
W P +++ RA R + + RAA+ H
Sbjct: 772 WPPPGLSSRRAPRFLIKSSPAPGRRALAARAANHAH 807
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 38.5 bits (88), Expect = 0.012
Identities = 77/336 (22%), Positives = 113/336 (33%), Gaps = 60/336 (17%)
Query: 117 GIVSAELAWRVSGGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGG 176
G++ W +G R+R + GR + G GG AC G GG
Sbjct: 499 GLLGCRTGWAAGRTLAGPRVRLGLEQLLGR----HVGAGVRGG-----AC----GPHRGG 545
Query: 177 AGGNVPVFFLINDAHAAARGSCALSPALGLAEN--GPGNEWYRGRPAHPAGA---ITLDG 231
G P+ A L+ ALG + G G PA A A I G
Sbjct: 546 IRGGRPL--------ERADDRVLLAQALGPVQRPRGAGGRLQDPWPASLALAGPGIARLG 597
Query: 232 PVLDAPSGAEAATLAGVRLPPPPGCGGSGA---RGLRPEQLWSHVQHARCPQPGRG---- 284
LD P P G GG G+ +G P S + +R P R
Sbjct: 598 CDLDGPRALVEGLHGRHEGGPLGGAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLA 657
Query: 285 ---PDASGAAGRSRAPPPAAVPAAWEGTD---------RRRGRRRRRPSGRNGTEGSTKA 332
P ++ +AG +P P + +G R+ RR R G S +A
Sbjct: 658 PPRPASATSAGSPTSPAPPLHMVSTDGCSAAFLVLDSARKGDRRSARRGGPRSWRPSARA 717
Query: 333 GWLGTATLACSLPPHALLLPSEAARGTEWERTVGTEDRKRDAALLVGRRDSDGRTDQRTD 392
W+ + T P S ARG+ ++ G + +L RD + +
Sbjct: 718 SWVRSTT------PRGPEASSPRARGSFLPKSGGGSPPRPARSLAGPSRDDEPLAGAPEE 771
Query: 393 WQPARVAALRAER---------SKARIPRRAASRTH 419
W P +++ RA R + + RAA+ H
Sbjct: 772 WPPPGLSSRRAPRFLIKSSPAPGRRALAARAANHAH 807
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 38.5 bits (88), Expect = 0.012
Identities = 51/221 (23%), Positives = 70/221 (31%), Gaps = 43/221 (19%)
Query: 129 GGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAG----GNVPVF 184
GGG G G G G G G G + A + A GG G G
Sbjct: 255 GGGGG--------GGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Query: 185 FLINDAHAAARGSCALSPALGLAEN---------GPGNEWYRGRPAHPAGAITLDGPVLD 235
+ + + G + P G A + G + + G+ HP+GA +L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 236 APS------GAEAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASG 289
+PS G + PPPP P Q S A G+ A
Sbjct: 367 SPSPMMRSYGGSYPEYSSPSAPPPP-----------PSQPQSQAAAAGAAAGGQQAAAGM 415
Query: 290 AAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGST 330
G+ AA AW ++R P+ GT G T
Sbjct: 416 GLGKDMGAQYAAASPAWAA-----AQQRSHPAMSPGTPGPT 451
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 38.5 bits (88), Expect = 0.012
Identities = 51/221 (23%), Positives = 70/221 (31%), Gaps = 43/221 (19%)
Query: 129 GGGSGTRLRQESPGVQGRPPDGYAGGPGHGGQERIHACSLGAGRRCGGAG----GNVPVF 184
GGG G G G G G G G + A + A GG G G
Sbjct: 255 GGGGG--------GGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Query: 185 FLINDAHAAARGSCALSPALGLAEN---------GPGNEWYRGRPAHPAGAITLDGPVLD 235
+ + + G + P G A + G + + G+ HP+GA +L
Sbjct: 307 YGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLT 366
Query: 236 APS------GAEAATLAGVRLPPPPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASG 289
+PS G + PPPP P Q S A G+ A
Sbjct: 367 SPSPMMRSYGGSYPEYSSPSAPPPP-----------PSQPQSQAAAAGAAAGGQQAAAGM 415
Query: 290 AAGRSRAPPPAAVPAAWEGTDRRRGRRRRRPSGRNGTEGST 330
G+ AA AW ++R P+ GT G T
Sbjct: 416 GLGKDMGAQYAAASPAWAA-----AQQRSHPAMSPGTPGPT 451
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,389,126
Number of Sequences: 37866
Number of extensions: 1344776
Number of successful extensions: 7310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 6463
Number of HSP's gapped (non-prelim): 1205
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.