Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753446
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753446 PREDICTED: hypothetical protein [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753446 PREDICTED: hypothetical protein [Homo sapiens] 198 9e-52
gi|14251215 Kruppel-like factor 5 [Homo sapiens] 30 0.32
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 30 0.54
gi|7657419 opticin precursor [Homo sapiens] 30 0.54
gi|169206056 PREDICTED: similar to FRAS1 related extracellular m... 29 0.93
gi|113424309 PREDICTED: similar to FRAS1 related extracellular m... 29 0.93
gi|113424119 PREDICTED: similar to FRAS1 related extracellular m... 29 0.93
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens] 29 0.93
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 29 0.93
gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens] 28 1.6
gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo ... 28 1.6
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 28 1.6
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 28 1.6
gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens] 28 1.6
gi|239743797 PREDICTED: similar to cell recognition molecule CAS... 28 2.1
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 28 2.1
gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo sa... 27 2.7
gi|27734911 DAZ interacting protein 1-like [Homo sapiens] 27 2.7
gi|153792074 proline rich 12 [Homo sapiens] 27 2.7
gi|28373065 potassium voltage-gated channel, KQT-like subfamily,... 27 3.5
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 27 4.6
gi|156616294 peptidoglycan recognition protein 2 precursor [Homo... 26 6.0
gi|41872673 NIMA-related kinase 1 [Homo sapiens] 26 6.0
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 26 6.0
gi|195234779 hypothetical protein LOC60686 [Homo sapiens] 26 6.0
gi|195234776 hypothetical protein LOC60686 [Homo sapiens] 26 6.0
gi|195233774 hypothetical protein LOC60686 [Homo sapiens] 26 6.0
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 26 6.0
gi|154937342 ring finger protein 190 [Homo sapiens] 26 6.0
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 26 6.0
>gi|239753446 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 198 bits (503), Expect = 9e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVQEMFHRNFWNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSP 60
MVQEMFHRNFWNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSP
Sbjct: 1 MVQEMFHRNFWNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSP 60
Query: 61 SRLLLASHLSSSLFTSSHPKHGFITNVFIKPQGTG 95
SRLLLASHLSSSLFTSSHPKHGFITNVFIKPQGTG
Sbjct: 61 SRLLLASHLSSSLFTSSHPKHGFITNVFIKPQGTG 95
>gi|14251215 Kruppel-like factor 5 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 43 PVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPKHGFITNVFIKPQ 92
PV + S T+APPP+P++ L +S+F+S + N+FIK +
Sbjct: 165 PVAIFSHQSETTAPPPAPTQALPE---FTSIFSSHQTAAPEVNNIFIKQE 211
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 43 PVQRDAPDSSTSAPPPSPSRLLLASHLS-SSLFTSS 77
P P++S PPP PS ++HL+ SSLF SS
Sbjct: 350 PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSLFPSS 385
>gi|7657419 opticin precursor [Homo sapiens]
Length = 332
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 40 SCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPKHGFIT 85
S AP +P ST+AP S + ++ L SS P HG T
Sbjct: 82 SLAPATSISPAKSTTAPGTPSSNPTMTRPTTAGLLLSSQPNHGLPT 127
>gi|169206056 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 42 APVQRDAPDSSTSAPPPSPSRLLLAS 67
+P +R +P S S PPP P LLL S
Sbjct: 38 SPRERASPSSPPSQPPPGPLPLLLVS 63
>gi|113424309 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 42 APVQRDAPDSSTSAPPPSPSRLLLAS 67
+P +R +P S S PPP P LLL S
Sbjct: 38 SPRERASPSSPPSQPPPGPLPLLLVS 63
>gi|113424119 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 28.9 bits (63), Expect = 0.93
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 42 APVQRDAPDSSTSAPPPSPSRLLLAS 67
+P +R +P S S PPP P LLL S
Sbjct: 38 SPRERASPSSPPSQPPPGPLPLLLVS 63
>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
Length = 325
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 4 EMFHRNFWNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSPSRL 63
+ +H + QE+LS + AK L+ C ++R ++ + P SP R
Sbjct: 204 DQYHEGLSDHIQEELSHLEV-------AKSLSALIGQCIHIERRLARAAAARKPRSPPRA 256
Query: 64 LLASHLSS 71
L+ H++S
Sbjct: 257 LVLPHIAS 264
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 4 EMFHRNFWNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSPSRL 63
+ +H + QE+LS + AK L+ C ++R ++ + P SP R
Sbjct: 204 DQYHEGLSDHIQEELSHLEV-------AKSLSALIGQCIHIERRLARAAAARKPRSPPRA 256
Query: 64 LLASHLSS 71
L+ H++S
Sbjct: 257 LVLPHIAS 264
>gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens]
Length = 273
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 11 WNLEQEQLSEMPAGNGVTYKAKP----HRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLA 66
++LE L E NG+ A P H LLL +++ SST++PP S + +
Sbjct: 64 FHLEYMDLDEFLLENGIP--ASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQP 121
Query: 67 SHLSSSLFTS 76
S SS +S
Sbjct: 122 SETVSSTESS 131
>gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo
sapiens]
Length = 212
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 33 PHRLLLQSCAPVQRDAPDSSTSAPPP-SPS 61
PHR++ SC ++D +S+ +APP SPS
Sbjct: 155 PHRIMGLSCGSHRKDRGESTANAPPSRSPS 184
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 56 PPPSPSRLLLASHLSSSLFTSSHPKH 81
PPP PS +L + H ++S HP H
Sbjct: 1719 PPPPPSSVLASGHHTTSAQALHHPPH 1744
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 56 PPPSPSRLLLASHLSSSLFTSSHPKH 81
PPP PS +L + H ++S HP H
Sbjct: 1719 PPPPPSSVLASGHHTTSAQALHHPPH 1744
>gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 11 WNLEQEQLSEMPAGNGVTYKAKP----HRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLA 66
++LE L E NG+ A P H LLL +++ SST++PP S + +
Sbjct: 94 FHLEYMDLDEFLLENGIP--ASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQP 151
Query: 67 SHLSSSLFTS 76
S SS +S
Sbjct: 152 SETVSSTESS 161
>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 944
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 11 WNLEQEQLSEMPAGNGVTYKAKPHRLLLQS--C----APVQRDAPDSSTSAPPPSP 60
W E+ + + G +P R LL S C AP RDAP+ + S P +P
Sbjct: 90 WERGTEEAAGITGGERQAELGRPSRSLLDSRCCRPPPAPSVRDAPEPAASVPGAAP 145
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 11 WNLEQEQLSEMPAGNGVTYKAKPHRLLLQSCA-PVQRDAPDSSTSAPPPSPS 61
+N + E +S++P G + +L + P Q P S+ SAPPP+PS
Sbjct: 397 FNGDAESVSDVPPSTGNSASLSLPLVLQPGLSEPPQPLLPASAPSAPPPAPS 448
>gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo
sapiens]
Length = 1220
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 31 AKPHRLLLQSCAPVQRDAPDSSTSAPPPSPSR 62
++PH L+ + DAP S+PPPSP++
Sbjct: 1155 SEPHIPLIDD-TDAEDDAPTKRNSSPPPSPNK 1185
>gi|27734911 DAZ interacting protein 1-like [Homo sapiens]
Length = 767
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 27 VTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPKHGFITN 86
VT +A+P LQ P ST A PP P+R SH SS S+ H +
Sbjct: 547 VTREAQPKTRTLQVALP--------STPAEPPPPTRQSHGSHGSSLTQVSAPAPHPGLHG 598
Query: 87 VFIKPQGTG 95
P +G
Sbjct: 599 PSSTPPSSG 607
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 33 PHRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPKHGFITNVFIKPQ 92
P R L + ++ +S PPP P L +LS S+P G N+ P
Sbjct: 278 PERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCG---GSYPSMGHRANLACSPL 334
Query: 93 GTG 95
G G
Sbjct: 335 GGG 337
>gi|28373065 potassium voltage-gated channel, KQT-like subfamily,
member 5 isoform 1 [Homo sapiens]
Length = 932
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 32 KPHRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSL 73
KPH L +C+P +++ ++S+S R+ +AS S+
Sbjct: 394 KPHLKALHTCSPTKKEQGEASSSQKLSFKERVRMASPRGQSI 435
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 26 GVTYKAKPHRLLLQSCAPVQRDAPDS-----STSAPPPSPSRLLLASHLSSSLFTSSHPK 80
G T K KP L P+ +P S +TS+P P S + SSL T+S K
Sbjct: 482 GTTQKLKPPPSSLPPPTPISGQSPSSQKSSTATSSPSPQSSSSQCSVPSLSSLTTNSQLK 541
>gi|156616294 peptidoglycan recognition protein 2 precursor [Homo
sapiens]
Length = 576
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 39 QSCAPVQRDAPDSSTSAPPPSPSRLL---LASHLSSSLF----TSSHPKHG 82
+ C VQ PD+ +PP LL LA +L + T SHP G
Sbjct: 194 KGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGSQTQSHPDLG 244
>gi|41872673 NIMA-related kinase 1 [Homo sapiens]
Length = 1258
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 41 CAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPK 80
C+P + A S + PP + ++ L LS+ LF +++PK
Sbjct: 1007 CSPEESFAFRSHSHLPPKNKNKNSLLIGLSTGLFDANNPK 1046
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 19 SEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPDSSTSAPPPSPSRLLL 65
S G + ++ HRL P+ AP +ST PP P++L++
Sbjct: 1204 SSRSLGLPIAASSEGHRL--PGHGPLSSSAPGASTQPPPHLPTKLVI 1248
>gi|195234779 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 35 RLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHP 79
+L +Q P P++ T PPP P +L A+ S S P
Sbjct: 228 QLAIQRATP--ETGPENGTKLPPPRPEDMLNAAAALDSALEESGP 270
>gi|195234776 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 35 RLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHP 79
+L +Q P P++ T PPP P +L A+ S S P
Sbjct: 228 QLAIQRATP--ETGPENGTKLPPPRPEDMLNAAAALDSALEESGP 270
>gi|195233774 hypothetical protein LOC60686 [Homo sapiens]
Length = 538
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 35 RLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHP 79
+L +Q P P++ T PPP P +L A+ S S P
Sbjct: 228 QLAIQRATP--ETGPENGTKLPPPRPEDMLNAAAALDSALEESGP 270
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 KAKPHRLL-LQSCAPVQRDAPDSSTSAPPPSPS 61
+AK RL +QSC+ P S S PP SPS
Sbjct: 875 RAKQVRLTCMQSCSAPVNAGPSSLASEPPGSPS 907
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 35 RLLLQSCAPVQRDAPDSSTSAPPPSPSRLLLASHLSSSLFTSSHPK 80
R L+ S P+ +APD + P +PS+ L LS + + P+
Sbjct: 201 RNLVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQ 246
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 26.2 bits (56), Expect = 6.0
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 23/79 (29%)
Query: 14 EQEQLSEMPAGNGVTYKAKPHRLLLQSCAPVQRDAPD------------SSTSAPPP--- 58
EQ +L + P G Y A+P S P D+P + A PP
Sbjct: 119 EQLELFQTP---GSCYPAQP-----LSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQL 170
Query: 59 SPSRLLLASHLSSSLFTSS 77
SPS LL ASH SSL SS
Sbjct: 171 SPSPLLFASHTGSSLQGSS 189
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,454,568
Number of Sequences: 37866
Number of extensions: 206348
Number of successful extensions: 1413
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 47
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.