Guide to the Human Genome
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Name: PGLYRP2 Sequence: fasta or formatted (576aa) NCBI GI: 156616294
Description:

peptidoglycan recognition protein 2 precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         63           2
 C cysteine            1.7         10           1
 D aspartate           5.6         32           1
 E glutamate           3.3         19           1
 F phenylalanine       2.6         15           1
 G glycine             8.5         49           1
 H histidine           2.8         16           2
 I isoleucine          1.7         10           1
 K lysine              2.1         12           1
 L leucine            13.5         78           3
 M methionine          1.6          9           1
 N asparagine          2.3         13           1
 P proline             8.3         48           3
 Q glutamine           4.2         24           2
 R arginine            6.8         39           2
 S serine              6.2         36           2
 T threonine           7.1         41           2
 V valine              6.2         36           2
 W tryptophan          2.1         12           1
 Y tyrosine            2.4         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidoglycan recognition protein 2 precursor [Homo... 
PGLYRP1               0.095   peptidoglycan recognition protein 1 
PGLYRP3               0.094   peptidoglycan recognition protein 3 precursor 
PGLYRP4               0.081   peptidoglycan recognition protein-I-beta precursor [...
DOT1L                 0.011   DOT1-like, histone H3 methyltransferase 
AHNAK                 0.010   AHNAK nucleoprotein isoform 1 
MED14                 0.007   mediator complex subunit 14 
DAG1                  0.006   dystroglycan 1 preproprotein 
AATK                  0.006   apoptosis-associated tyrosine kinase 
TRMT1                 0.006   tRNA methyltransferase 1 isoform 1 
TRMT1                 0.006   tRNA methyltransferase 1 isoform 1 
TRMT1                 0.006   tRNA methyltransferase 1 isoform 2 
TRAK2                 0.006   trafficking protein, kinesin binding 2 
C20orf132             0.006   hypothetical protein LOC140699 isoform 1 
LAT                   0.004   linker for activation of T cells isoform d 
LAT                   0.004   linker for activation of T cells isoform c 
LAT                   0.004   linker for activation of T cells isoform b 
LAT                   0.004   linker for activation of T cells isoform a 
PLXNA1                0.004   plexin A1 
SCRIB                 0.004   scribble isoform b 
SCRIB                 0.004   scribble isoform a 
RIPK3                 0.004   receptor-interacting serine-threonine kinase 3 [Homo...
AP2A1                 0.004   adaptor-related protein complex 2, alpha 1 subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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