Guide to the Human Genome
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Name: LOC100294030 Sequence: fasta or formatted (95aa) NCBI GI: 239753446
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          6           1
 C cysteine            1.1          1           1
 D aspartate           2.1          2           1
 E glutamate           4.2          4           1
 F phenylalanine       5.3          5           1
 G glycine             5.3          5           1
 H histidine           5.3          5           1
 I isoleucine          2.1          2           1
 K lysine              4.2          4           1
 L leucine            10.5         10           3
 M methionine          3.2          3           1
 N asparagine          4.2          4           1
 P proline            10.5         10           3
 Q glutamine           6.3          6           1
 R arginine            4.2          4           1
 S serine             13.7         13           3
 T threonine           5.3          5           1
 V valine              4.2          4           1
 W tryptophan          1.1          1           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
KLF5                  0.029   Kruppel-like factor 5 
TICAM1                0.029   toll-like receptor adaptor molecule 1 
OPTC                  0.029   opticin precursor 
LOC650794             0.023   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.023   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.023   PREDICTED: similar to FRAS1 related extracellular m...
PEG10                 0.023   paternally expressed 10 isoform RF1 
PEG10                 0.023   paternally expressed 10 isoform RF1/2 
TEF                   0.017   thyrotrophic embryonic factor isoform 2 
LOC100287979          0.017   PREDICTED: hypothetical protein XP_002344243 
MLL5                  0.017   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.017   myeloid/lymphoid or mixed-lineage leukemia 5 
TEF                   0.017   thyrotrophic embryonic factor isoform 1 
LOC643827             0.017   PREDICTED: similar to cell recognition molecule CAS...
MTF1                  0.017   metal-regulatory transcription factor 1 
ATP2B1                0.012   plasma membrane calcium ATPase 1 isoform 1b 
DZIP1L                0.012   DAZ interacting protein 1-like 
PRR12                 0.012   proline rich 12 
KCNQ5                 0.012   potassium voltage-gated channel, KQT-like subfamily,...
MYST4                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
PGLYRP2               0.006   peptidoglycan recognition protein 2 precursor [Homo...
NEK1                  0.006   NIMA-related kinase 1 
GLTSCR1               0.006   glioma tumor suppressor candidate region gene 1 [Ho...
C14orf93              0.006   hypothetical protein LOC60686 
C14orf93              0.006   hypothetical protein LOC60686 
C14orf93              0.006   hypothetical protein LOC60686 
NFKBIL2               0.006   NF-kappa-B inhibitor-like protein 2 
MARCH10               0.006   ring finger protein 190 
BATF2                 0.006   basic leucine zipper transcription factor, ATF-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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