Guide to the Human Genome
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Name: LOC100291593 Sequence: fasta or formatted (195aa) NCBI GI: 239753418
Description:

PREDICTED: similar to hCG2012845

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         25           3
 C cysteine            2.6          5           1
 D aspartate           2.1          4           1
 E glutamate           5.6         11           1
 F phenylalanine       1.0          2           1
 G glycine            15.4         30           3
 H histidine           5.1         10           2
 I isoleucine          3.1          6           1
 K lysine              1.5          3           1
 L leucine             7.2         14           2
 M methionine          0.5          1           1
 N asparagine          1.5          3           1
 P proline             7.7         15           2
 Q glutamine           6.7         13           5
 R arginine           11.8         23           3
 S serine              5.6         11           1
 T threonine           3.1          6           1
 V valine              5.1         10           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2012845 
LOC100289945          0.653   PREDICTED: hypothetical protein XP_002346487 
LOC100288913          0.653   PREDICTED: hypothetical protein XP_002342331 
LOC100293935          0.045   PREDICTED: hypothetical protein 
LOC100287289          0.045   PREDICTED: hypothetical protein 
LOC100287289          0.045   PREDICTED: hypothetical protein XP_002343656 
LOC100129907          0.039   PREDICTED: hypothetical protein 
LOC100129907          0.039   PREDICTED: hypothetical protein 
LOC100129907          0.039   PREDICTED: hypothetical protein 
MPND                  0.037   MPN domain containing isoform 2 
MPND                  0.037   MPN domain containing isoform 1 
LOC100292172          0.037   PREDICTED: hypothetical protein 
LOC100289763          0.037   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.037   PREDICTED: hypothetical protein XP_002343623 
LOC100290946          0.032   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.032   PREDICTED: hypothetical protein XP_002344246 
LOC100131774          0.032   PREDICTED: hypothetical protein 
LOC100131774          0.032   PREDICTED: hypothetical protein 
LOC100131774          0.032   PREDICTED: hypothetical protein 
HNRNPL                0.029   heterogeneous nuclear ribonucleoprotein L isoform a ...
FGF2                  0.029   fibroblast growth factor 2 
COL6A2                0.029   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.029   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.029   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
COL16A1               0.029   alpha 1 type XVI collagen precursor 
COL29A1               0.026   collagen, type XXIX, alpha 1 
RRS1                  0.026   homolog of yeast ribosome biogenesis regulatory prot...
SHOX2                 0.026   short stature homeobox 2 isoform a 
CACNA1A               0.026   calcium channel, alpha 1A subunit isoform 4 
LOC100293776          0.024   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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