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Search of human proteins with 239753242
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753242 PREDICTED: hypothetical protein XP_002345593 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753242 PREDICTED: hypothetical protein XP_002345593 [Homo ... 238 8e-64
gi|239747801 PREDICTED: hypothetical protein XP_002348317 [Homo ... 238 8e-64
gi|239741675 PREDICTED: hypothetical protein XP_002342283 [Homo ... 238 8e-64
gi|239755335 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo ... 35 0.010
gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo ... 35 0.010
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 34 0.028
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 27 2.7
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 27 2.7
gi|14149793 glutamine rich 2 [Homo sapiens] 27 2.7
gi|9910372 5',3'-nucleotidase, mitochondrial precursor [Homo sap... 27 2.7
gi|197382472 actin filament associated protein 1 isoform a [Homo... 27 3.5
gi|40807504 actin filament associated protein 1 [Homo sapiens] 27 3.5
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 26 7.7
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 26 7.7
gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens] 26 7.7
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 26 7.7
gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens] 26 7.7
gi|134254443 pecanex-like 2 [Homo sapiens] 26 7.7
gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C (6... 26 7.7
>gi|239753242 PREDICTED: hypothetical protein XP_002345593 [Homo
sapiens]
Length = 115
Score = 238 bits (607), Expect = 8e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL
Sbjct: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
Query: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV
Sbjct: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
>gi|239747801 PREDICTED: hypothetical protein XP_002348317 [Homo
sapiens]
Length = 115
Score = 238 bits (607), Expect = 8e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL
Sbjct: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
Query: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV
Sbjct: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
>gi|239741675 PREDICTED: hypothetical protein XP_002342283 [Homo
sapiens]
Length = 115
Score = 238 bits (607), Expect = 8e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL
Sbjct: 1 MKLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPL 60
Query: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV
Sbjct: 61 TNEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
>gi|239755335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 515
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
Query: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
V+ D +V + V H+E C
Sbjct: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
>gi|239749833 PREDICTED: hypothetical protein XP_002347172 [Homo
sapiens]
Length = 302
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
Query: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
V+ D +V + V H+E C
Sbjct: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
>gi|239744123 PREDICTED: hypothetical protein XP_002343065 [Homo
sapiens]
Length = 302
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
AS+S MR AR VAER P QCTSTRP ++ + + T++ V
Sbjct: 2 ASTSVMFSQIMRKARTSVAERLTPMAQCTSTRPCTLGNTEGSSDVSSNRQKVDTEVEEGV 61
Query: 79 VLHRDTLVAEKALKVVGAAGGHVEDGC 105
V+ D +V + V H+E C
Sbjct: 62 VVRLDAIVLQGHSTVEFGTCVHLELAC 88
>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
Length = 1385
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 11 RRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEP 70
R C +K K++S R R + + R+I +W+ +T PP+ FT P + E
Sbjct: 330 RTCPSKEKSNSCRILVPSYRQKKDDMLTRKIQSWKLGTTVPPISFTPGPCSEADLKRWEA 389
Query: 71 GTDLHHLVVLHRDTLVAEKAL-KVVGAAGGHVEDGCDATGLQPLQ 114
+ L H+ L+ E+ K+ G G A +Q L+
Sbjct: 390 IREASRL--RHKKRLMVERLFQKIYGENGSKSMSDVSAEDVQNLR 432
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 10 PRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAW 44
PRRC + S+ +R RR ++ A+Q +R +PAW
Sbjct: 85 PRRCKSSSRPHLARGRRSPLKAAQQ---DRGLPAW 116
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 10 PRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAW 44
PRRC + S+ +R RR ++ A+Q +R +PAW
Sbjct: 85 PRRCKSSSRPHLARGRRSPLKAAQQ---DRGLPAW 116
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 10 PRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAW 44
PRRC + S+ +R RR ++ A+Q +R +PAW
Sbjct: 85 PRRCKSSSRPHLARGRRSPLKAAQQ---DRGLPAW 116
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 73 DLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
D H LV+ L A A +V+G AG VE C +G+ QV
Sbjct: 1398 DFHLLVLTPPSVLGAGAAQEVLGLAGADVELQCWTSGVPTPQV 1440
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 73 DLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCDATGLQPLQV 115
D H LV+ L A A +V+G AG VE C +G+ QV
Sbjct: 116 DFHLLVLTPPSVLGAGAAQEVLGLAGADVELQCWTSGVPTPQV 158
>gi|14149793 glutamine rich 2 [Homo sapiens]
Length = 1663
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 63 EAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGA-AGGHVEDGCDATGL 110
EA G ++PGT+ H L+ R ++AL GA G V+ G D GL
Sbjct: 390 EATGFIQPGTEQHDLIQSGR----FQRALVQRGAYQPGLVQPGADQRGL 434
>gi|9910372 5',3'-nucleotidase, mitochondrial precursor [Homo
sapiens]
Length = 228
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 33 RQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLVVLHRDTLVAEKALK 92
++M + + + CTS P F CP A+ G D +VL RD K
Sbjct: 116 KEMASLQNTDVFICTS--PIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRD--------K 165
Query: 93 VVGAAGGHVEDGCDATGLQP 112
V +A ++D D TG +P
Sbjct: 166 TVVSADLLIDDRPDITGAEP 185
>gi|197382472 actin filament associated protein 1 isoform a [Homo
sapiens]
Length = 814
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 2 KLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLT 61
K + G+ T C+ K T+ LC + ++ + E+P C T P
Sbjct: 163 KKRFGQWTKLLCVIKD------TKLLCYKSSKDQQPQMELPLQGCNITYIP---KDSKKK 213
Query: 62 NEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAA----GGHVEDGCDATGLQPL 113
+ + GTD L V ++ AE+ LKV+ A G V+ C P+
Sbjct: 214 KHELKITQQGTDPLVLAVQSKEQ--AEQWLKVIKEAYSGCSGPVDSECPPPPSSPV 267
>gi|40807504 actin filament associated protein 1 [Homo sapiens]
Length = 730
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 2 KLKLGEMTPRRCLTKSKASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLT 61
K + G+ T C+ K T+ LC + ++ + E+P C T P
Sbjct: 163 KKRFGQWTKLLCVIKD------TKLLCYKSSKDQQPQMELPLQGCNITYIP---KDSKKK 213
Query: 62 NEAYGLLEPGTDLHHLVVLHRDTLVAEKALKVVGAA----GGHVEDGCDATGLQPL 113
+ + GTD L V ++ AE+ LKV+ A G V+ C P+
Sbjct: 214 KHELKITQQGTDPLVLAVQSKEQ--AEQWLKVIKEAYSGCSGPVDSECPPPPSSPV 267
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 35 MVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGL 67
+V R +P W C++ FF+ C + N A G+
Sbjct: 12 VVKVRGLP-WSCSADEVQRFFSDCKIQNGAQGI 43
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 72 TDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCD 106
T H+ + T V KAL+ G A H+ DG D
Sbjct: 529 TPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLD 563
>gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]
Length = 937
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 72 TDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCD 106
T H+ + T V KAL+ G A H+ DG D
Sbjct: 546 TPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLD 580
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 72 TDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCD 106
T H+ + T V KAL+ G A H+ DG D
Sbjct: 529 TPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLD 563
>gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]
Length = 920
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 72 TDLHHLVVLHRDTLVAEKALKVVGAAGGHVEDGCD 106
T H+ + T V KAL+ G A H+ DG D
Sbjct: 529 TPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLD 563
>gi|134254443 pecanex-like 2 [Homo sapiens]
Length = 2137
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 30 RYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHL 77
R R+ + + A S RPP+ + P+ L+ T +H L
Sbjct: 1929 RTGRRKGRSQSVQAHSALSQRPPMLSSSGPILESRQTFLQTSTSVHEL 1976
>gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C
(62kD) [Homo sapiens]
Length = 534
Score = 25.8 bits (55), Expect = 7.7
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 19 ASSSRTRRLCMRYARQMVAEREIPAWQCTSTRPPLFFTQCPLTNEAYGLLEPGTDLHHLV 78
A ++R + R M+ EI TS+ P FTQ +NE + L G ++ V
Sbjct: 254 AVANRMDQTSSEIVRTMLRMSEIT----TSSSAP--FTQPLSSNEIFRSLPVGYNISKQV 307
Query: 79 VLHRDTLVAEKALKVVGAAG 98
+ TL+A+ L+ VG +G
Sbjct: 308 LDQYLTLLADDPLEFVGKSG 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,558,100
Number of Sequences: 37866
Number of extensions: 170304
Number of successful extensions: 353
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 27
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.